Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.50700 * 109.46977 * 120.00061 * 2 1 3 5 5 H 1.08007 * 119.99817 * 120.00309 * 4 2 1 6 6 C 1.37876 * 120.00309 * 299.99727 * 4 2 1 7 7 N 1.31513 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00419 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46850 * 60.00220 * 8 6 4 10 10 H 1.48497 * 109.47257 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47055 * 300.00344 * 8 6 4 12 12 N 1.46498 * 109.47321 * 240.00214 * 2 1 3 13 13 C 1.34774 * 120.00371 * 85.00004 * 12 2 1 14 14 O 1.21517 * 119.99646 * 359.97438 * 13 12 2 15 15 C 1.48184 * 120.00250 * 180.02562 * 13 12 2 16 16 C 1.39032 * 119.68616 * 179.97438 * 15 13 12 17 17 C 1.39458 * 118.95543 * 179.74823 * 16 15 13 18 18 N 1.39189 * 120.83294 * 180.23410 * 17 16 15 19 19 C 1.39419 * 118.33264 * 0.25347 * 17 16 15 20 20 C 1.38234 * 119.26403 * 0.02562 * 19 17 16 21 21 N 1.31643 * 120.99711 * 0.02562 * 20 19 17 22 22 H 1.08992 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47442 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.46911 * 59.99681 * 1 2 3 25 25 H 0.97000 * 120.00255 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99860 * 265.00270 * 12 2 1 27 27 H 1.08002 * 120.52698 * 0.03186 * 16 15 13 28 28 H 0.96998 * 120.00276 * 0.02562 * 18 17 16 29 29 H 0.97004 * 119.99591 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.36813 * 180.02562 * 19 17 16 31 31 H 1.08000 * 119.50039 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1210 4.0082 10 1 1.8259 -0.4206 5.2205 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8576 1.1607 -2.4118 15 6 2.6406 -0.7169 -3.5672 16 6 2.7704 -0.0171 -4.7615 17 6 3.2412 -0.6883 -5.8896 18 7 3.3909 -0.0247 -7.1039 19 6 3.5579 -2.0409 -5.7706 20 6 3.3959 -2.6679 -4.5493 21 7 2.9482 -2.0075 -3.5023 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1526 27 1 2.5150 1.0310 -4.8138 28 1 3.1671 0.9166 -7.1731 29 1 3.7198 -0.5034 -7.8808 30 1 3.9256 -2.5926 -6.6231 31 1 3.6396 -3.7156 -4.4530 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123542443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -7.237237 kcal Electronic energy + Delta-G solvation = -15869.230387 eV Core-core repulsion = 13150.203824 eV Total energy + Delta-G solvation = -2719.026564 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24283 -38.30801 -35.43536 -34.74854 -32.30254 -31.19246 -29.81168 -28.67842 -25.19754 -24.30430 -23.00983 -21.14154 -19.46547 -18.10031 -17.49896 -16.38789 -15.68121 -15.54344 -15.12747 -14.55728 -14.45321 -14.15886 -13.79532 -13.35920 -13.00049 -12.31179 -11.81263 -11.65554 -11.52200 -11.03581 -10.89393 -10.68277 -10.28134 -10.15992 -9.65052 -9.07453 -9.04413 -8.95501 -8.47970 -8.15114 -7.81720 -6.05392 -4.13936 0.95839 1.53366 3.32038 3.36043 3.36622 3.38861 3.50173 4.04151 4.30913 4.41063 4.60422 4.95663 5.03905 5.26839 5.29297 5.64417 5.74051 5.95439 6.00943 6.61808 6.89886 7.04476 7.13147 7.21186 7.43822 7.50800 7.63339 7.76888 7.96098 8.12454 8.21031 8.77125 8.84411 9.17944 9.53023 11.00766 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.046396 B = 0.005431 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.351805 B = 5154.819665 C = 5548.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.682 5.682 13 C 0.551 3.449 14 O -0.551 6.551 15 C 0.133 3.867 16 C -0.194 4.194 17 C 0.242 3.758 18 N -0.866 5.866 19 C -0.245 4.245 20 C 0.137 3.863 21 N -0.498 5.498 22 H 0.028 0.972 23 H 0.091 0.909 24 H 0.015 0.985 25 H 0.264 0.736 26 H 0.401 0.599 27 H 0.143 0.857 28 H 0.402 0.598 29 H 0.400 0.600 30 H 0.131 0.869 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -5.244 -16.843 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.328 5.328 13 C 0.334 3.666 14 O -0.430 6.430 15 C -0.004 4.004 16 C -0.220 4.220 17 C 0.128 3.872 18 N -0.406 5.406 19 C -0.271 4.271 20 C -0.022 4.022 21 N -0.213 5.213 22 H 0.047 0.953 23 H 0.110 0.890 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.235 0.765 27 H 0.161 0.839 28 H 0.231 0.769 29 H 0.229 0.771 30 H 0.149 0.851 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.169 -4.697 -15.810 17.012 hybrid contribution 0.597 -0.336 -0.429 0.808 sum 4.766 -5.033 -16.239 17.656 Atomic orbital electron populations 1.22075 0.98261 0.99273 1.00918 1.18834 0.91196 0.94057 0.79971 0.93224 1.21198 1.32361 1.13230 0.90212 0.91940 1.24880 0.94834 0.94968 0.99011 1.69896 1.35952 1.22533 1.23914 0.86486 0.79166 0.79609 0.81704 1.20178 1.21197 1.20127 1.46440 1.62422 1.14331 1.09654 1.17921 0.79345 0.86306 0.83048 1.90724 1.52138 1.15334 1.84814 1.21336 0.95229 0.89912 0.93971 1.21561 1.06482 1.02201 0.91756 1.17912 0.91186 0.91576 0.86478 1.42343 1.75246 1.13783 1.09207 1.21668 1.10976 0.93808 1.00622 1.22490 0.92703 0.99697 0.87324 1.67692 1.13708 1.07987 1.31915 0.95326 0.89042 0.96626 0.92581 0.76483 0.83887 0.76865 0.77122 0.85118 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.26 6.98 2.56 -69.09 -0.18 6.81 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.66 8.73 -34.44 -0.30 -14.96 16 5 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.68 -15.81 5.06 -55.77 -0.28 -16.09 16 13 C 0.55 12.31 7.78 -12.18 -0.09 12.21 16 14 O -0.55 -13.82 15.98 5.35 0.09 -13.73 16 15 C 0.13 2.42 6.75 -83.05 -0.56 1.86 16 16 C -0.19 -2.97 9.52 -38.83 -0.37 -3.33 16 17 C 0.24 2.84 6.81 -83.63 -0.57 2.27 16 18 N -0.87 -6.68 9.08 32.52 0.30 -6.38 16 19 C -0.24 -2.63 10.00 -39.14 -0.39 -3.02 16 20 C 0.14 1.71 11.17 -17.63 -0.20 1.51 16 21 N -0.50 -8.22 9.54 -9.89 -0.09 -8.31 16 22 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.40 8.62 7.87 -40.82 -0.32 8.29 16 27 H 0.14 2.17 7.64 -52.49 -0.40 1.77 16 28 H 0.40 2.63 8.86 -40.82 -0.36 2.27 16 29 H 0.40 2.05 8.86 -40.82 -0.36 1.69 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -32.36 275.02 -6.04 -38.40 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.39 Total: 9.03 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.41 Total: 1.62 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.55 Total: -55.58 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.36 -6.04 -38.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123542443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.160 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds