Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.50700 * 109.46977 * 120.00061 * 2 1 3 5 5 H 1.08007 * 119.99817 * 120.00309 * 4 2 1 6 6 C 1.37876 * 120.00309 * 299.99727 * 4 2 1 7 7 N 1.31513 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00419 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46850 * 60.00220 * 8 6 4 10 10 H 1.48497 * 109.47257 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47055 * 300.00344 * 8 6 4 12 12 N 1.46498 * 109.47321 * 240.00214 * 2 1 3 13 13 C 1.34774 * 120.00371 * 85.00004 * 12 2 1 14 14 O 1.21517 * 119.99646 * 359.97438 * 13 12 2 15 15 C 1.48184 * 120.00250 * 180.02562 * 13 12 2 16 16 C 1.39032 * 119.68616 * 179.97438 * 15 13 12 17 17 C 1.39458 * 118.95543 * 179.74823 * 16 15 13 18 18 N 1.39189 * 120.83294 * 180.23410 * 17 16 15 19 19 C 1.39419 * 118.33264 * 0.25347 * 17 16 15 20 20 C 1.38234 * 119.26403 * 0.02562 * 19 17 16 21 21 N 1.31643 * 120.99711 * 0.02562 * 20 19 17 22 22 H 1.08992 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47442 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.46911 * 59.99681 * 1 2 3 25 25 H 0.97000 * 120.00255 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99860 * 265.00270 * 12 2 1 27 27 H 1.08002 * 120.52698 * 0.03186 * 16 15 13 28 28 H 0.96998 * 120.00276 * 0.02562 * 18 17 16 29 29 H 0.97004 * 119.99591 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.36813 * 180.02562 * 19 17 16 31 31 H 1.08000 * 119.50039 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1210 4.0082 10 1 1.8259 -0.4206 5.2205 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8576 1.1607 -2.4118 15 6 2.6406 -0.7169 -3.5672 16 6 2.7704 -0.0171 -4.7615 17 6 3.2412 -0.6883 -5.8896 18 7 3.3909 -0.0247 -7.1039 19 6 3.5579 -2.0409 -5.7706 20 6 3.3959 -2.6679 -4.5493 21 7 2.9482 -2.0075 -3.5023 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 2.2490 -1.6318 -1.1526 27 1 2.5150 1.0310 -4.8138 28 1 3.1671 0.9166 -7.1731 29 1 3.7198 -0.5034 -7.8808 30 1 3.9256 -2.5926 -6.6231 31 1 3.6396 -3.7156 -4.4530 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123542443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -32.727097 kcal Electronic energy + Delta-G solvation = -15870.335711 eV Core-core repulsion = 13150.203824 eV Total energy + Delta-G solvation = -2720.131887 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47225 -39.93037 -36.76362 -36.35676 -34.30483 -32.42531 -30.96073 -30.40941 -27.35210 -25.69371 -24.01758 -22.89999 -21.25820 -19.63185 -18.44711 -18.03993 -17.11745 -16.94434 -16.60004 -16.13217 -15.94202 -15.54551 -14.91242 -14.70545 -14.63164 -14.36547 -13.70539 -13.01792 -12.88750 -12.76814 -12.74549 -12.52742 -12.27754 -12.14643 -11.16438 -11.13639 -10.59509 -10.41655 -10.20729 -9.74989 -8.98728 -8.16818 -6.34582 -0.21499 0.53438 1.45930 1.48997 1.56805 1.90723 2.29636 2.49962 2.87572 3.03286 3.13332 3.39072 3.88604 4.02912 4.23169 4.53951 4.73143 4.75137 4.90714 4.92237 5.01354 5.06535 5.39928 5.58752 5.62887 5.68755 5.88418 6.07639 6.34643 6.70871 6.79466 6.88147 7.11778 7.29913 7.46459 8.89694 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.046396 B = 0.005431 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.351805 B = 5154.819665 C = 5548.662973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.266 3.734 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.976 3.024 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.264 1.264 12 N -0.683 5.683 13 C 0.547 3.453 14 O -0.591 6.591 15 C 0.103 3.897 16 C -0.204 4.204 17 C 0.248 3.752 18 N -0.846 5.846 19 C -0.224 4.224 20 C 0.131 3.869 21 N -0.525 5.525 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.267 0.733 26 H 0.409 0.591 27 H 0.133 0.867 28 H 0.410 0.590 29 H 0.418 0.582 30 H 0.177 0.823 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -7.551 -18.641 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.189 1.189 12 N -0.330 5.330 13 C 0.332 3.668 14 O -0.473 6.473 15 C -0.033 4.033 16 C -0.231 4.231 17 C 0.132 3.868 18 N -0.386 5.386 19 C -0.249 4.249 20 C -0.028 4.028 21 N -0.241 5.241 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.245 0.755 27 H 0.151 0.849 28 H 0.239 0.761 29 H 0.250 0.750 30 H 0.194 0.806 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.494 -7.021 -17.674 19.795 hybrid contribution 0.235 0.388 -0.068 0.459 sum 5.729 -6.633 -17.742 19.789 Atomic orbital electron populations 1.21891 0.97924 0.99510 0.99781 1.18488 0.91456 0.92053 0.81672 0.97940 1.21476 1.32887 1.13643 0.90794 0.91196 1.25810 0.94755 0.95581 1.02254 1.70040 1.36795 1.23854 1.24785 0.85341 0.78615 0.78694 0.77336 1.19616 1.20802 1.18871 1.46216 1.62992 1.14571 1.09222 1.18630 0.78114 0.86024 0.84008 1.90675 1.53728 1.17175 1.85698 1.20641 0.98774 0.91156 0.92741 1.21519 1.07328 1.01912 0.92344 1.17935 0.90162 0.92153 0.86558 1.42322 1.73730 1.14236 1.08332 1.22115 1.08372 0.93136 1.01304 1.23152 0.91557 1.01063 0.86988 1.67574 1.15103 1.07204 1.34217 0.94202 0.90960 0.96847 0.92398 0.75494 0.84931 0.76050 0.75033 0.80601 0.78944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 2 C 0.27 14.92 2.56 44.24 0.11 15.04 16 3 H 0.00 0.17 7.58 -2.39 -0.02 0.16 16 4 C -0.55 -30.94 8.73 25.60 0.22 -30.72 16 5 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.70 16 8 Si 0.98 43.38 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 12 N -0.68 -32.99 5.06 -448.66 -2.27 -35.26 16 13 C 0.55 25.63 7.78 86.89 0.68 26.31 16 14 O -0.59 -31.54 15.98 -3.77 -0.06 -31.60 16 15 C 0.10 3.81 6.75 41.83 0.28 4.09 16 16 C -0.20 -6.18 9.52 22.75 0.22 -5.96 16 17 C 0.25 5.09 6.81 38.55 0.26 5.36 16 18 N -0.85 -10.00 9.08 -51.02 -0.46 -10.46 16 19 C -0.22 -3.81 10.00 22.55 0.23 -3.58 16 20 C 0.13 2.84 11.17 84.72 0.95 3.78 16 21 N -0.53 -16.85 9.54 -185.21 -1.77 -18.62 16 22 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.07 4.17 6.07 -2.39 -0.01 4.15 16 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.41 18.09 7.87 -92.70 -0.73 17.36 16 27 H 0.13 4.16 7.64 -2.91 -0.02 4.14 16 28 H 0.41 4.22 8.86 -92.71 -0.82 3.40 16 29 H 0.42 2.32 8.86 -92.71 -0.82 1.50 16 30 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.68 275.02 0.59 -73.09 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -1.18 Total: 21.97 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.06 Total: 9.19 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.26 Total: -118.05 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.06 Total: -31.60 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.68 0.59 -73.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123542443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.365 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds