Wall clock time and date at job start Sun Mar 29 2020 22:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37109 * 119.99763 * 2 1 4 4 H 1.08001 * 119.99890 * 150.54506 * 3 2 1 5 5 C 1.38941 * 119.99921 * 330.54760 * 3 2 1 6 6 N 1.31412 * 120.00166 * 331.98018 * 5 3 2 7 7 Si 1.86800 * 119.99885 * 151.98095 * 5 3 2 8 8 H 1.48503 * 109.47526 * 269.99840 * 7 5 3 9 9 H 1.48502 * 109.47268 * 149.99966 * 7 5 3 10 10 H 1.48506 * 109.47308 * 29.99788 * 7 5 3 11 11 C 1.34769 * 120.00327 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00519 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99745 * 0.02562 * 11 2 1 14 14 H 1.08994 * 115.55079 * 34.33113 * 13 11 2 15 15 C 1.53002 * 117.49938 * 248.61735 * 13 11 2 16 16 C 1.52997 * 60.00204 * 252.51448 * 15 13 11 17 17 H 1.09003 * 117.50187 * 107.49077 * 16 15 13 18 18 C 1.50703 * 117.51614 * 252.51956 * 16 15 13 19 19 C 1.34666 * 126.58859 * 33.31849 * 18 16 15 20 20 N 1.34128 * 108.01868 * 179.87577 * 19 18 16 21 21 C 1.30504 * 109.25561 * 0.39497 * 20 19 18 22 22 N 1.35043 * 108.70065 * 359.75625 * 21 20 19 23 23 H 0.96989 * 126.39931 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46638 * 94.87670 * 1 2 3 25 25 H 1.09003 * 109.46719 * 214.87677 * 1 2 3 26 26 H 1.08999 * 109.47010 * 334.87906 * 1 2 3 27 27 H 0.96998 * 120.00327 * 353.86061 * 6 5 3 28 28 H 1.09007 * 117.49561 * 0.02562 * 15 13 11 29 29 H 1.08997 * 117.49881 * 145.01880 * 15 13 11 30 30 H 1.07995 * 125.99038 * 0.02562 * 19 18 16 31 31 H 1.07998 * 125.65171 * 179.77981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1258 1.2479 0.4599 5 6 1.5904 2.3129 -0.5917 6 7 0.7394 2.1789 -1.5840 7 14 2.0472 4.0166 0.0235 8 1 1.1091 4.4218 1.1010 9 1 1.9622 4.9869 -1.0975 10 1 3.4333 3.9955 0.5560 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4722 0.0005 14 1 0.4474 -2.4735 -0.5544 15 6 1.4603 -3.3312 1.2645 16 6 2.2076 -3.7626 0.0011 17 1 3.2935 -3.6675 0.0015 18 6 1.6584 -4.9380 -0.7656 19 6 0.3613 -5.2759 -0.8962 20 7 0.2945 -6.3798 -1.6551 21 6 1.5015 -6.7436 -1.9928 22 7 2.3823 -5.8706 -1.4583 23 1 3.3476 -5.8990 -1.5486 24 1 -0.3632 -0.0874 -1.0240 25 1 -0.3633 -0.8431 0.5877 26 1 -0.3633 0.9305 0.4363 27 1 0.5697 1.3021 -1.9624 28 1 2.0542 -2.9520 2.0962 29 1 0.5711 -3.8975 1.5414 30 1 -0.4781 -4.7489 -0.4673 31 1 1.7540 -7.6006 -2.5995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142762641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:09 Heat of formation + Delta-G solvation = 52.603070 kcal Electronic energy + Delta-G solvation = -16106.334137 eV Core-core repulsion = 13389.902444 eV Total energy + Delta-G solvation = -2716.431693 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04012 -39.01950 -36.32609 -34.71055 -32.47873 -31.53730 -29.16069 -26.52207 -25.06963 -23.25634 -22.59504 -21.57937 -20.36236 -18.82524 -17.97750 -17.32604 -16.13436 -15.01320 -14.90067 -14.57363 -14.27592 -13.87128 -13.75668 -13.48814 -13.35750 -12.09511 -11.84754 -11.71271 -11.68455 -11.27540 -10.86827 -10.73013 -10.23547 -10.19525 -10.01628 -9.97540 -9.93737 -8.96079 -8.51065 -8.14671 -7.84269 -6.64439 -3.93834 1.97355 3.06663 3.11639 3.27145 3.35192 3.54519 3.57790 4.17178 4.39134 4.51083 4.68871 4.89644 5.02591 5.16178 5.25462 5.30461 5.43118 5.57953 5.74188 5.89581 6.03516 6.09233 6.25588 6.35739 6.44019 6.61071 6.72494 7.35362 7.89031 8.04386 8.08340 8.62293 8.89625 9.38620 9.85326 10.60880 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051370 B = 0.005455 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.938029 B = 5131.720006 C = 5268.150602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.447 5.447 3 C -0.405 4.405 4 H 0.088 0.912 5 C 0.010 3.990 6 N -0.873 5.873 7 Si 1.077 2.923 8 H -0.284 1.284 9 H -0.284 1.284 10 H -0.283 1.283 11 C 0.474 3.526 12 O -0.583 6.583 13 C -0.150 4.150 14 H 0.116 0.884 15 C -0.140 4.140 16 C -0.068 4.068 17 H 0.121 0.879 18 C 0.026 3.974 19 C -0.030 4.030 20 N -0.493 5.493 21 C 0.174 3.826 22 N -0.565 5.565 23 H 0.420 0.580 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.275 0.725 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 -12.362 2.336 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.166 5.166 3 C -0.532 4.532 4 H 0.106 0.894 5 C -0.198 4.198 6 N -0.507 5.507 7 Si 0.903 3.097 8 H -0.210 1.210 9 H -0.209 1.209 10 H -0.209 1.209 11 C 0.262 3.738 12 O -0.468 6.468 13 C -0.172 4.172 14 H 0.134 0.866 15 C -0.178 4.178 16 C -0.088 4.088 17 H 0.139 0.861 18 C -0.090 4.090 19 C -0.178 4.178 20 N -0.213 5.213 21 C -0.109 4.109 22 N -0.169 5.169 23 H 0.257 0.743 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.185 0.815 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.169 -11.120 1.902 11.342 hybrid contribution 1.369 -1.305 0.125 1.896 sum 0.200 -12.425 2.027 12.591 Atomic orbital electron populations 1.21678 0.82515 1.01530 1.00282 1.43514 1.04594 1.05086 1.63409 1.20375 1.06164 0.86444 1.40242 0.89388 1.26405 0.96071 1.04014 0.93327 1.70731 1.34479 1.27698 1.17810 0.83385 0.76333 0.73883 0.76088 1.20997 1.20924 1.20869 1.19199 0.87415 0.83740 0.83416 1.90503 1.13884 1.86844 1.55532 1.22473 1.01053 0.90956 1.02753 0.86585 1.23058 1.02178 1.01443 0.91162 1.20118 0.99087 0.90207 0.99429 0.86100 1.20482 0.92233 0.94463 1.01864 1.21999 0.94945 0.97048 1.03775 1.70251 1.22372 1.13651 1.14977 1.24897 0.84634 0.98114 1.03245 1.43181 1.10621 1.22492 1.40559 0.74261 0.93766 0.93309 0.91079 0.91387 0.87862 0.87977 0.81511 0.77676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.79 8.20 59.85 0.49 2.28 16 2 N -0.45 -11.36 2.82 -122.19 -0.34 -11.70 16 3 C -0.41 -11.43 8.95 -14.93 -0.13 -11.56 16 4 H 0.09 2.65 7.66 -52.49 -0.40 2.24 16 5 C 0.01 0.26 4.66 -17.47 -0.08 0.18 16 6 N -0.87 -24.41 12.85 55.50 0.71 -23.69 16 7 Si 1.08 23.79 30.00 -169.99 -5.10 18.69 16 8 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.47 11.49 7.41 -10.99 -0.08 11.41 16 12 O -0.58 -16.22 16.03 5.55 0.09 -16.13 16 13 C -0.15 -2.72 4.35 -91.77 -0.40 -3.12 16 14 H 0.12 1.95 7.19 -51.93 -0.37 1.58 16 15 C -0.14 -2.06 9.75 -26.73 -0.26 -2.32 16 16 C -0.07 -1.08 5.84 -91.77 -0.54 -1.61 16 17 H 0.12 2.04 7.67 -51.93 -0.40 1.64 16 18 C 0.03 0.37 6.92 -81.60 -0.56 -0.20 16 19 C -0.03 -0.45 10.94 -17.81 -0.19 -0.64 16 20 N -0.49 -7.29 11.25 -14.67 -0.17 -7.46 16 21 C 0.17 1.99 13.04 -90.37 -1.18 0.81 16 22 N -0.57 -6.50 6.15 -10.30 -0.06 -6.56 16 23 H 0.42 3.55 8.96 -40.82 -0.37 3.18 16 24 H 0.04 0.93 7.00 -51.93 -0.36 0.57 16 25 H 0.05 0.85 6.92 -51.93 -0.36 0.49 16 26 H 0.07 1.57 7.46 -51.93 -0.39 1.18 16 27 H 0.28 7.74 6.60 -40.82 -0.27 7.47 16 28 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.10 1.24 7.94 -51.93 -0.41 0.82 16 30 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -34.40 272.15 -7.10 -41.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.40 Total: 6.01 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.94 Total: -4.77 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.14 Total: -49.41 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.10 Total: 18.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.40 -7.10 -41.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142762641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.109 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds