Wall clock time and date at job start Sun Mar 29 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37109 * 119.99763 * 2 1 4 4 H 1.08001 * 119.99890 * 150.54506 * 3 2 1 5 5 C 1.38941 * 119.99921 * 330.54760 * 3 2 1 6 6 N 1.31412 * 120.00166 * 331.98018 * 5 3 2 7 7 Si 1.86800 * 119.99885 * 151.98095 * 5 3 2 8 8 H 1.48503 * 109.47526 * 269.99840 * 7 5 3 9 9 H 1.48502 * 109.47268 * 149.99966 * 7 5 3 10 10 H 1.48506 * 109.47308 * 29.99788 * 7 5 3 11 11 C 1.34769 * 120.00327 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00519 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99745 * 0.02562 * 11 2 1 14 14 H 1.08994 * 115.55079 * 34.33113 * 13 11 2 15 15 C 1.53002 * 117.49938 * 248.61735 * 13 11 2 16 16 C 1.52997 * 60.00204 * 252.51448 * 15 13 11 17 17 H 1.09003 * 117.50187 * 107.49077 * 16 15 13 18 18 C 1.50703 * 117.51614 * 252.51956 * 16 15 13 19 19 C 1.34666 * 126.58859 * 33.31849 * 18 16 15 20 20 N 1.34128 * 108.01868 * 179.87577 * 19 18 16 21 21 C 1.30504 * 109.25561 * 0.39497 * 20 19 18 22 22 N 1.35043 * 108.70065 * 359.75625 * 21 20 19 23 23 H 0.96989 * 126.39931 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46638 * 94.87670 * 1 2 3 25 25 H 1.09003 * 109.46719 * 214.87677 * 1 2 3 26 26 H 1.08999 * 109.47010 * 334.87906 * 1 2 3 27 27 H 0.96998 * 120.00327 * 353.86061 * 6 5 3 28 28 H 1.09007 * 117.49561 * 0.02562 * 15 13 11 29 29 H 1.08997 * 117.49881 * 145.01880 * 15 13 11 30 30 H 1.07995 * 125.99038 * 0.02562 * 19 18 16 31 31 H 1.07998 * 125.65171 * 179.77981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1258 1.2479 0.4599 5 6 1.5904 2.3129 -0.5917 6 7 0.7394 2.1789 -1.5840 7 14 2.0472 4.0166 0.0235 8 1 1.1091 4.4218 1.1010 9 1 1.9622 4.9869 -1.0975 10 1 3.4333 3.9955 0.5560 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4722 0.0005 14 1 0.4474 -2.4735 -0.5544 15 6 1.4603 -3.3312 1.2645 16 6 2.2076 -3.7626 0.0011 17 1 3.2935 -3.6675 0.0015 18 6 1.6584 -4.9380 -0.7656 19 6 0.3613 -5.2759 -0.8962 20 7 0.2945 -6.3798 -1.6551 21 6 1.5015 -6.7436 -1.9928 22 7 2.3823 -5.8706 -1.4583 23 1 3.3476 -5.8990 -1.5486 24 1 -0.3632 -0.0874 -1.0240 25 1 -0.3633 -0.8431 0.5877 26 1 -0.3633 0.9305 0.4363 27 1 0.5697 1.3021 -1.9624 28 1 2.0542 -2.9520 2.0962 29 1 0.5711 -3.8975 1.5414 30 1 -0.4781 -4.7489 -0.4673 31 1 1.7540 -7.6006 -2.5995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142762641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:08 Heat of formation + Delta-G solvation = 29.841144 kcal Electronic energy + Delta-G solvation = -16107.321168 eV Core-core repulsion = 13389.902444 eV Total energy + Delta-G solvation = -2717.418724 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.03313 -40.78639 -37.87408 -36.65311 -33.60281 -33.43493 -30.24699 -28.40137 -26.85710 -24.60118 -24.13363 -22.54546 -21.48324 -20.51961 -19.35412 -19.04035 -17.75069 -16.85600 -16.35229 -15.90443 -15.62499 -15.45630 -15.23904 -14.86479 -14.42157 -13.88566 -13.59815 -13.48564 -13.10266 -12.92308 -12.59630 -12.02896 -11.97578 -11.92562 -11.59086 -11.02837 -10.97524 -10.93014 -10.42954 -9.88557 -9.24372 -8.79507 -6.11245 0.94675 1.48585 1.54424 1.82306 1.84354 2.14233 2.15228 2.40107 2.82380 2.91572 3.12645 3.59403 3.75139 3.87719 3.93559 4.08219 4.20386 4.43034 4.45860 4.58686 4.64147 4.72226 4.84816 4.90094 5.03778 5.30452 5.70896 5.76984 5.87583 6.52376 6.58760 6.86609 7.07789 7.36558 7.87573 8.44671 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051370 B = 0.005455 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.938029 B = 5131.720006 C = 5268.150602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.467 5.467 3 C -0.435 4.435 4 H 0.056 0.944 5 C -0.021 4.021 6 N -0.886 5.886 7 Si 1.125 2.875 8 H -0.261 1.261 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.467 3.533 12 O -0.631 6.631 13 C -0.167 4.167 14 H 0.132 0.868 15 C -0.112 4.112 16 C -0.056 4.056 17 H 0.104 0.896 18 C 0.006 3.994 19 C -0.037 4.037 20 N -0.533 5.533 21 C 0.194 3.806 22 N -0.560 5.560 23 H 0.433 0.567 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.176 0.824 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -13.712 2.625 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.185 5.185 3 C -0.562 4.562 4 H 0.074 0.926 5 C -0.225 4.225 6 N -0.520 5.520 7 Si 0.945 3.055 8 H -0.185 1.185 9 H -0.205 1.205 10 H -0.205 1.205 11 C 0.257 3.743 12 O -0.518 6.518 13 C -0.189 4.189 14 H 0.150 0.850 15 C -0.150 4.150 16 C -0.076 4.076 17 H 0.122 0.878 18 C -0.110 4.110 19 C -0.184 4.184 20 N -0.252 5.252 21 C -0.090 4.090 22 N -0.164 5.164 23 H 0.273 0.727 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.156 0.844 30 H 0.193 0.807 31 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.041 -12.488 2.196 12.842 hybrid contribution 1.693 -1.020 -0.018 1.976 sum -0.348 -13.507 2.178 13.686 Atomic orbital electron populations 1.21722 0.80092 1.02634 1.00780 1.43782 1.06216 1.04812 1.63714 1.20330 1.05957 0.88593 1.41316 0.92604 1.27774 0.95142 1.07106 0.92480 1.70847 1.35484 1.27022 1.18600 0.82794 0.76731 0.69707 0.76289 1.18546 1.20474 1.20498 1.20214 0.87289 0.85502 0.81265 1.90458 1.16246 1.87956 1.57165 1.22247 1.01572 0.88564 1.06517 0.85025 1.23189 1.02963 0.99081 0.89738 1.19973 0.98033 0.89426 1.00210 0.87788 1.20229 0.92542 0.94919 1.03303 1.22239 0.95293 0.97187 1.03687 1.70276 1.24176 1.14368 1.16408 1.25791 0.83668 0.98073 1.01420 1.43211 1.11491 1.21840 1.39815 0.72680 0.94015 0.89126 0.92388 0.92538 0.88404 0.84398 0.80688 0.73360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.83 8.20 127.77 1.05 4.87 16 2 N -0.47 -24.15 2.82 -658.88 -1.86 -26.00 16 3 C -0.43 -25.29 8.95 84.04 0.75 -24.54 16 4 H 0.06 3.54 7.66 -2.91 -0.02 3.51 16 5 C -0.02 -1.17 4.66 84.92 0.40 -0.78 16 6 N -0.89 -49.94 12.85 21.66 0.28 -49.67 16 7 Si 1.12 48.02 30.00 68.60 2.06 50.08 16 8 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 9 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 C 0.47 23.05 7.41 87.66 0.65 23.70 16 12 O -0.63 -36.40 16.03 -3.06 -0.05 -36.45 16 13 C -0.17 -5.88 4.35 -11.54 -0.05 -5.93 16 14 H 0.13 4.20 7.19 -2.39 -0.02 4.18 16 15 C -0.11 -3.04 9.75 30.59 0.30 -2.74 16 16 C -0.06 -1.71 5.84 -11.54 -0.07 -1.77 16 17 H 0.10 3.52 7.67 -2.39 -0.02 3.50 16 18 C 0.01 0.17 6.92 40.95 0.28 0.45 16 19 C -0.04 -1.00 10.94 83.52 0.91 -0.08 16 20 N -0.53 -14.38 11.25 -200.32 -2.25 -16.64 16 21 C 0.19 3.80 13.04 180.26 2.35 6.15 16 22 N -0.56 -11.45 6.15 -186.49 -1.15 -12.60 16 23 H 0.43 6.32 8.96 -92.72 -0.83 5.49 16 24 H 0.04 1.76 7.00 -2.39 -0.02 1.74 16 25 H 0.09 2.98 6.92 -2.39 -0.02 2.97 16 26 H 0.06 2.56 7.46 -2.39 -0.02 2.54 16 27 H 0.26 15.15 6.60 -92.71 -0.61 14.53 16 28 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.14 2.80 7.94 -2.39 -0.02 2.78 16 30 H 0.18 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.25 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -76.95 272.15 4.09 -72.86 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.48 Total: 19.10 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.57 Total: -0.68 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.98 Total: -104.90 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.05 Total: -36.45 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.06 Total: 50.08 kcal Total: -76.95 4.09 -72.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142762641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.701 kcal (2) G-P(sol) polarization free energy of solvation -76.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds