Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38630 * 120.73294 * 2 1 4 4 N 1.32262 * 119.18728 * 179.78352 * 3 2 1 5 5 C 1.32423 * 120.74461 * 0.48657 * 4 3 2 6 6 N 1.38937 * 119.20297 * 179.74976 * 5 4 3 7 7 C 1.34777 * 119.99792 * 0.02562 * 6 5 4 8 8 O 1.21258 * 120.00286 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47154 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99765 * 179.97438 * 10 9 7 13 13 N 1.31505 * 120.00430 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47009 * 60.00291 * 14 12 10 16 16 H 1.48494 * 109.47422 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47165 * 300.00628 * 14 12 10 18 18 N 1.32395 * 121.59186 * 359.76603 * 5 4 3 19 19 C 1.32285 * 120.75484 * 359.97438 * 18 5 4 20 20 C 1.50695 * 120.40769 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47152 * 269.71573 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71674 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71655 * 1 2 3 24 24 H 1.08009 * 120.40778 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00186 * 180.02562 * 6 5 4 26 26 H 1.09008 * 109.46943 * 300.00408 * 9 7 6 27 27 H 1.08997 * 109.46569 * 59.99995 * 9 7 6 28 28 H 0.97000 * 120.00433 * 179.97438 * 13 12 10 29 29 H 1.09003 * 109.46904 * 269.96882 * 20 19 18 30 30 H 1.08995 * 109.47524 * 29.97024 * 20 19 18 31 31 H 1.08996 * 109.47427 * 149.97447 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1916 0.0000 4 7 3.5376 1.1559 0.0044 5 6 4.1836 0.0000 -0.0010 6 7 5.5730 -0.0001 -0.0014 7 6 6.2469 1.1671 0.0040 8 8 5.6407 2.2173 0.0098 9 6 7.7540 1.1671 0.0029 10 6 8.2564 2.5878 0.0104 11 1 7.5545 3.4088 0.0159 12 6 9.6119 2.8397 0.0114 13 7 10.4665 1.8401 0.0052 14 14 10.2347 4.6008 0.0200 15 1 9.7400 5.2948 1.2362 16 1 11.7196 4.6008 0.0190 17 1 9.7393 5.3069 -1.1889 18 7 3.5376 -1.1556 -0.0062 19 6 2.2152 -1.1913 -0.0057 20 6 1.4878 -2.5111 -0.0111 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8874 -0.5182 23 1 -0.3633 0.8925 -0.5094 24 1 1.6942 2.1376 0.0004 25 1 6.0580 -0.8401 -0.0057 26 1 8.1179 0.6486 0.8901 27 1 8.1165 0.6578 -0.8899 28 1 11.4202 2.0173 0.0055 29 1 1.3115 -2.8245 -1.0401 30 1 2.0923 -3.2612 0.4987 31 1 0.5335 -2.4021 0.5040 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = 14.903052 kcal Electronic energy + Delta-G solvation = -15775.262762 eV Core-core repulsion = 13057.196273 eV Total energy + Delta-G solvation = -2718.066489 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09163 -38.72219 -35.08940 -34.07144 -32.97363 -32.60193 -29.19955 -29.03069 -26.59934 -23.99368 -23.27837 -22.04899 -19.70967 -18.18188 -17.04326 -16.23005 -15.53001 -15.44062 -14.74585 -14.41453 -14.25572 -14.08568 -13.35247 -13.09628 -13.00258 -12.89637 -12.59727 -12.14965 -12.13005 -11.32562 -10.87623 -10.83612 -10.68854 -10.47764 -10.06935 -9.99874 -9.34510 -9.11378 -8.48156 -8.46396 -8.17181 -6.09130 -4.09572 1.12116 1.28618 3.07457 3.37076 3.39066 3.45622 3.46180 4.14538 4.23079 4.44728 4.55528 4.78228 4.89778 4.96460 5.29371 5.34019 5.36162 5.45295 5.50124 5.73724 5.80017 5.91094 6.10184 6.36244 6.84837 7.06189 7.23465 7.32908 7.57610 7.93248 8.18358 8.56963 9.00362 9.04259 9.55647 11.03104 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.059861 B = 0.004956 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.641652 B = 5648.164450 C = 6090.055958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.249 4.249 3 C 0.178 3.822 4 N -0.502 5.502 5 C 0.543 3.457 6 N -0.650 5.650 7 C 0.504 3.496 8 O -0.469 6.469 9 C 0.012 3.988 10 C -0.512 4.512 11 H 0.076 0.924 12 C 0.057 3.943 13 N -0.900 5.900 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.557 5.557 19 C 0.200 3.800 20 C -0.104 4.104 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.166 0.834 25 H 0.419 0.581 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 -8.271 -0.055 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.255 4.255 3 C 0.010 3.990 4 N -0.222 5.222 5 C 0.189 3.811 6 N -0.300 5.300 7 C 0.293 3.707 8 O -0.336 6.336 9 C -0.028 4.028 10 C -0.550 4.550 11 H 0.094 0.906 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.279 5.279 19 C 0.052 3.948 20 C -0.162 4.162 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.183 0.817 25 H 0.256 0.744 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.911 -7.440 -0.048 18.475 hybrid contribution -0.153 0.373 -0.003 0.403 sum -17.064 -7.067 -0.051 18.469 Atomic orbital electron populations 1.20530 0.89661 1.02843 1.02160 1.21264 0.98617 0.94958 1.10686 1.23137 0.88966 0.97913 0.88980 1.68618 1.09232 1.27429 1.16917 1.19819 0.87532 0.84519 0.89274 1.44195 1.01032 1.12645 1.72136 1.22559 0.92477 0.81513 0.74140 1.90653 1.69863 1.30321 1.42722 1.19291 0.82607 1.00862 0.99992 1.21093 0.91907 0.91206 1.50841 0.90569 1.24993 0.96663 0.97791 0.94994 1.69940 1.02322 1.30940 1.50691 0.86441 0.77144 0.84268 0.78930 1.20054 1.21313 1.20059 1.67665 1.10028 1.29020 1.21208 1.21240 0.88246 0.95557 0.89724 1.20764 0.99541 0.92427 1.03421 0.91377 0.91403 0.91423 0.81734 0.74402 0.92909 0.92907 0.92719 0.89869 0.90089 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.28 36.01 0.33 -0.39 16 2 C -0.25 -3.05 5.91 -104.34 -0.62 -3.66 16 3 C 0.18 2.67 11.00 -17.22 -0.19 2.48 16 4 N -0.50 -9.98 7.87 -13.83 -0.11 -10.09 16 5 C 0.54 10.47 8.38 -322.25 -2.70 7.77 16 6 N -0.65 -12.70 5.40 -13.07 -0.07 -12.77 16 7 C 0.50 11.91 7.78 -10.98 -0.09 11.82 16 8 O -0.47 -12.53 13.66 5.58 0.08 -12.46 16 9 C 0.01 0.30 5.46 -29.03 -0.16 0.14 16 10 C -0.51 -14.80 8.92 -34.44 -0.31 -15.10 16 11 H 0.08 2.29 6.75 -52.48 -0.35 1.94 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 14 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 N -0.56 -9.20 10.39 -10.06 -0.10 -9.31 16 19 C 0.20 2.65 6.82 -82.27 -0.56 2.08 16 20 C -0.10 -0.89 9.45 36.00 0.34 -0.55 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.42 6.82 -51.93 -0.35 0.07 16 23 H 0.07 0.46 8.10 -51.93 -0.42 0.03 16 24 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 25 H 0.42 6.86 8.81 -40.82 -0.36 6.50 16 26 H 0.05 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.51 6.81 -51.93 -0.35 0.15 16 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -34.39 274.31 -7.91 -42.30 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.51 Total: 0.46 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -4.04 Total: 6.11 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.45 Total: -57.65 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.39 -7.91 -42.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.206 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds