Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38630 * 120.73294 * 2 1 4 4 N 1.32262 * 119.18728 * 179.78352 * 3 2 1 5 5 C 1.32423 * 120.74461 * 0.48657 * 4 3 2 6 6 N 1.38937 * 119.20297 * 179.74976 * 5 4 3 7 7 C 1.34777 * 119.99792 * 0.02562 * 6 5 4 8 8 O 1.21258 * 120.00286 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47154 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99765 * 179.97438 * 10 9 7 13 13 N 1.31505 * 120.00430 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99850 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47009 * 60.00291 * 14 12 10 16 16 H 1.48494 * 109.47422 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47165 * 300.00628 * 14 12 10 18 18 N 1.32395 * 121.59186 * 359.76603 * 5 4 3 19 19 C 1.32285 * 120.75484 * 359.97438 * 18 5 4 20 20 C 1.50695 * 120.40769 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47152 * 269.71573 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71674 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71655 * 1 2 3 24 24 H 1.08009 * 120.40778 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00186 * 180.02562 * 6 5 4 26 26 H 1.09008 * 109.46943 * 300.00408 * 9 7 6 27 27 H 1.08997 * 109.46569 * 59.99995 * 9 7 6 28 28 H 0.97000 * 120.00433 * 179.97438 * 13 12 10 29 29 H 1.09003 * 109.46904 * 269.96882 * 20 19 18 30 30 H 1.08995 * 109.47524 * 29.97024 * 20 19 18 31 31 H 1.08996 * 109.47427 * 149.97447 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1916 0.0000 4 7 3.5376 1.1559 0.0044 5 6 4.1836 0.0000 -0.0010 6 7 5.5730 -0.0001 -0.0014 7 6 6.2469 1.1671 0.0040 8 8 5.6407 2.2173 0.0098 9 6 7.7540 1.1671 0.0029 10 6 8.2564 2.5878 0.0104 11 1 7.5545 3.4088 0.0159 12 6 9.6119 2.8397 0.0114 13 7 10.4665 1.8401 0.0052 14 14 10.2347 4.6008 0.0200 15 1 9.7400 5.2948 1.2362 16 1 11.7196 4.6008 0.0190 17 1 9.7393 5.3069 -1.1889 18 7 3.5376 -1.1556 -0.0062 19 6 2.2152 -1.1913 -0.0057 20 6 1.4878 -2.5111 -0.0111 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8874 -0.5182 23 1 -0.3633 0.8925 -0.5094 24 1 1.6942 2.1376 0.0004 25 1 6.0580 -0.8401 -0.0057 26 1 8.1179 0.6486 0.8901 27 1 8.1165 0.6578 -0.8899 28 1 11.4202 2.0173 0.0055 29 1 1.3115 -2.8245 -1.0401 30 1 2.0923 -3.2612 0.4987 31 1 0.5335 -2.4021 0.5040 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = -7.487873 kcal Electronic energy + Delta-G solvation = -15776.233705 eV Core-core repulsion = 13057.196273 eV Total energy + Delta-G solvation = -2719.037432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.35326 -40.40898 -36.48882 -35.30914 -35.10614 -33.87242 -31.11652 -29.96831 -27.76440 -25.86868 -24.36239 -23.46214 -21.29021 -19.57445 -18.65429 -18.12375 -17.21072 -16.89787 -16.46250 -15.74989 -15.71561 -15.21883 -14.77135 -14.23406 -14.17909 -14.11899 -13.70782 -13.38241 -13.25358 -12.84635 -12.72750 -12.60294 -12.09662 -11.99242 -11.79287 -11.51268 -11.38513 -10.74015 -10.64211 -9.93710 -9.43035 -8.27402 -6.35450 -0.09790 0.16062 1.40394 1.43571 1.51025 1.65536 1.74251 2.41692 2.83564 3.08486 3.14473 3.48086 3.61994 3.98721 4.06766 4.29631 4.55773 4.75250 4.77225 4.89602 4.97412 4.99523 5.10514 5.15105 5.17868 5.30847 5.61862 5.70219 5.89766 6.13421 6.24783 6.75599 7.15982 7.29078 7.39679 8.84627 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.059861 B = 0.004956 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.641652 B = 5648.164450 C = 6090.055958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.222 4.222 3 C 0.154 3.846 4 N -0.551 5.551 5 C 0.512 3.488 6 N -0.642 5.642 7 C 0.514 3.486 8 O -0.509 6.509 9 C 0.017 3.983 10 C -0.540 4.540 11 H 0.057 0.943 12 C 0.013 3.987 13 N -0.923 5.923 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.272 1.272 18 N -0.561 5.561 19 C 0.184 3.816 20 C -0.100 4.100 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.189 0.811 25 H 0.430 0.570 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.130 -9.006 -0.073 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.228 4.228 3 C -0.012 4.012 4 N -0.272 5.272 5 C 0.157 3.843 6 N -0.293 5.293 7 C 0.303 3.697 8 O -0.378 6.378 9 C -0.023 4.023 10 C -0.578 4.578 11 H 0.075 0.925 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.198 1.198 18 N -0.283 5.283 19 C 0.037 3.963 20 C -0.157 4.157 21 H 0.105 0.895 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.206 0.794 25 H 0.270 0.730 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.228 -8.229 -0.067 20.915 hybrid contribution 0.343 0.489 0.004 0.598 sum -18.885 -7.740 -0.063 20.409 Atomic orbital electron populations 1.20703 0.85696 1.04797 1.03864 1.21795 1.01145 0.93451 1.06406 1.23678 0.87770 1.00271 0.89451 1.68468 1.11819 1.28525 1.18361 1.19761 0.87052 0.85536 0.91990 1.43609 1.02001 1.11742 1.71953 1.21993 0.91803 0.82098 0.73841 1.90620 1.70402 1.31888 1.44931 1.19103 0.84330 0.99237 0.99586 1.21292 0.92306 0.92324 1.51901 0.92486 1.25771 0.96606 1.01969 0.94251 1.70013 1.02733 1.32748 1.50721 0.85476 0.77193 0.79293 0.78917 1.19749 1.19754 1.19758 1.67708 1.11845 1.27661 1.21108 1.22210 0.87321 0.98165 0.88607 1.20938 1.00170 0.89566 1.04994 0.89499 0.88966 0.90064 0.79442 0.73046 0.93200 0.93192 0.92222 0.88036 0.90150 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.28 71.24 0.66 -0.34 16 2 C -0.22 -4.86 5.91 -19.68 -0.12 -4.98 16 3 C 0.15 4.48 11.00 84.72 0.93 5.41 16 4 N -0.55 -22.39 7.87 -197.66 -1.56 -23.94 16 5 C 0.51 20.11 8.38 261.29 2.19 22.30 16 6 N -0.64 -26.05 5.40 -313.66 -1.69 -27.74 16 7 C 0.51 25.38 7.78 87.66 0.68 26.06 16 8 O -0.51 -28.46 13.66 -2.96 -0.04 -28.50 16 9 C 0.02 0.90 5.46 29.10 0.16 1.06 16 10 C -0.54 -32.20 8.92 25.60 0.23 -31.97 16 11 H 0.06 3.57 6.75 -2.91 -0.02 3.55 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.92 -54.17 13.29 21.45 0.28 -53.88 16 14 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 N -0.56 -18.21 10.39 -185.74 -1.93 -20.14 16 19 C 0.18 4.44 6.82 42.57 0.29 4.73 16 20 C -0.10 -1.32 9.45 71.23 0.67 -0.64 16 21 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.09 0.62 6.82 -2.39 -0.02 0.60 16 23 H 0.08 0.73 8.10 -2.38 -0.02 0.71 16 24 H 0.19 4.23 8.06 -2.91 -0.02 4.20 16 25 H 0.43 14.64 8.81 -92.71 -0.82 13.82 16 26 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 27 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 0.80 6.81 -2.39 -0.02 0.79 16 Total: -1.00 -76.85 274.31 3.59 -73.26 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.34 Total: 10.40 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.16 Total: 22.85 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -4.90 Total: -125.71 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.04 Total: -28.50 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.85 3.59 -73.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.773 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds