Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32244 * 119.91925 * 2 1 4 4 C 1.31955 * 120.07703 * 180.27772 * 3 2 1 5 5 C 1.39237 * 119.90022 * 359.73160 * 4 3 2 6 6 N 1.39401 * 120.08105 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99516 * 174.92160 * 6 5 4 8 8 O 1.21273 * 120.00204 * 5.09361 * 7 6 5 9 9 C 1.50702 * 119.99919 * 185.08589 * 7 6 5 10 10 C 1.50699 * 109.47003 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00327 * 0.02562 * 10 9 7 12 12 C 1.37884 * 120.00098 * 179.97438 * 10 9 7 13 13 N 1.31507 * 120.00542 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99620 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47663 * 89.99721 * 14 12 10 16 16 H 1.48507 * 109.47122 * 209.99906 * 14 12 10 17 17 H 1.48500 * 109.47387 * 329.99384 * 14 12 10 18 18 N 1.32606 * 119.82991 * 0.02562 * 5 4 3 19 19 C 1.32210 * 119.92732 * 359.97438 * 18 5 4 20 20 C 1.50693 * 119.95447 * 179.97438 * 19 18 5 21 21 H 1.08997 * 109.46906 * 270.24766 * 1 2 3 22 22 H 1.09004 * 109.46902 * 30.24323 * 1 2 3 23 23 H 1.08997 * 109.47296 * 150.24094 * 1 2 3 24 24 H 1.08004 * 120.05085 * 179.71423 * 4 3 2 25 25 H 0.97000 * 120.00633 * 354.93273 * 6 5 4 26 26 H 1.08999 * 109.47080 * 300.00490 * 9 7 6 27 27 H 1.08996 * 109.47123 * 60.00717 * 9 7 6 28 28 H 0.97001 * 120.00371 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47076 * 89.99866 * 20 19 18 30 30 H 1.08998 * 109.47202 * 210.00011 * 20 19 18 31 31 H 1.09002 * 109.46924 * 330.00036 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1666 1.1462 0.0000 4 6 3.4862 1.1498 -0.0055 5 6 4.1836 -0.0553 -0.0057 6 7 5.5776 -0.0558 -0.0110 7 6 6.2513 -1.2185 0.0921 8 8 5.6481 -2.2706 0.0965 9 6 7.7543 -1.2113 0.2019 10 6 8.2573 -2.6282 0.3036 11 1 7.5587 -3.4516 0.2898 12 6 9.6097 -2.8735 0.4134 13 7 10.0487 -4.1099 0.5027 14 14 10.8183 -1.4493 0.4367 15 1 11.0369 -1.0083 1.8377 16 1 12.1098 -1.8864 -0.1519 17 1 10.2691 -0.3210 -0.3575 18 7 3.5183 -1.2024 -0.0009 19 6 2.1963 -1.1981 0.0047 20 6 1.4396 -2.5013 0.0096 21 1 -0.3633 0.0044 1.0276 22 1 -0.3633 0.8878 -0.5176 23 1 -0.3634 -0.8921 -0.5101 24 1 4.0244 2.0862 -0.0102 25 1 6.0627 0.7805 -0.0888 26 1 8.1809 -0.7372 -0.6821 27 1 8.0510 -0.6554 1.0912 28 1 11.0002 -4.2824 0.5795 29 1 1.2615 -2.8141 1.0384 30 1 0.4854 -2.3694 -0.5004 31 1 2.0248 -3.2631 -0.5056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = 17.416342 kcal Electronic energy + Delta-G solvation = -15887.313922 eV Core-core repulsion = 13169.356417 eV Total energy + Delta-G solvation = -2717.957504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22549 -38.90331 -35.17823 -34.33278 -32.94456 -32.55408 -29.83026 -28.70716 -27.05885 -23.84179 -23.19949 -21.97289 -20.05716 -17.63053 -17.41674 -16.81412 -15.86721 -15.58568 -15.32527 -14.48429 -14.33612 -13.77953 -13.25140 -13.11915 -13.04854 -12.76650 -12.66995 -12.26599 -11.81023 -11.72859 -11.27333 -10.99937 -10.86129 -10.60697 -10.10076 -10.02533 -9.42227 -9.33828 -8.64214 -8.46456 -8.07091 -6.08911 -4.09899 0.89396 1.32855 3.12630 3.22173 3.27092 3.31645 3.36013 3.93044 4.20451 4.28789 4.34924 4.53575 4.89511 5.02766 5.21241 5.28789 5.38761 5.49194 5.62216 5.71780 5.75165 5.85832 6.03801 6.30355 6.47063 6.76918 6.79196 7.29042 7.47324 7.69947 8.12553 8.47487 8.89123 9.10598 9.47994 11.03877 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.005464 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.859406 B = 5123.329407 C = 5638.617127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.019 3.981 3 N -0.412 5.412 4 C 0.003 3.997 5 C 0.327 3.673 6 N -0.667 5.667 7 C 0.506 3.494 8 O -0.459 6.459 9 C -0.025 4.025 10 C -0.517 4.517 11 H 0.093 0.907 12 C 0.071 3.929 13 N -0.894 5.894 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.266 1.266 18 N -0.433 5.433 19 C 0.120 3.880 20 C -0.104 4.104 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.167 0.833 25 H 0.415 0.585 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 11.337 -1.192 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 N -0.126 5.126 4 C -0.163 4.163 5 C 0.092 3.908 6 N -0.315 5.315 7 C 0.294 3.706 8 O -0.324 6.324 9 C -0.065 4.065 10 C -0.555 4.555 11 H 0.111 0.889 12 C -0.131 4.131 13 N -0.532 5.532 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.191 1.191 18 N -0.154 5.154 19 C -0.023 4.023 20 C -0.162 4.162 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.184 0.816 25 H 0.252 0.748 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.337 10.352 -1.150 18.539 hybrid contribution 1.271 1.269 0.033 1.796 sum -14.066 11.621 -1.116 18.279 Atomic orbital electron populations 1.20613 0.88155 1.03351 1.02897 1.21810 0.98060 0.89080 1.03304 1.68076 1.07693 1.29117 1.07716 1.23076 0.90722 0.97310 1.05194 1.19734 0.86767 0.90741 0.93548 1.44327 1.02173 1.12475 1.72513 1.21885 0.91692 0.82088 0.74933 1.90699 1.69630 1.29990 1.42131 1.19720 0.86372 1.01593 0.98791 1.20956 0.93369 0.90333 1.50853 0.88892 1.24961 0.97988 0.95554 0.94635 1.69884 1.14642 1.18888 1.49806 0.86882 0.81178 0.83058 0.78696 1.20064 1.21019 1.19094 1.68456 1.07431 1.27040 1.12510 1.22077 0.89668 0.96614 0.93914 1.20791 0.98974 0.92895 1.03550 0.90671 0.90802 0.90340 0.81632 0.74791 0.93251 0.93632 0.92470 0.89894 0.90078 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.78 36.01 0.35 -0.48 16 2 C 0.02 0.25 6.78 -82.42 -0.56 -0.31 16 3 N -0.41 -5.86 10.41 -9.12 -0.09 -5.95 16 4 C 0.00 0.05 11.09 -17.13 -0.19 -0.14 16 5 C 0.33 5.53 7.43 -154.42 -1.15 4.38 16 6 N -0.67 -11.07 5.39 -11.32 -0.06 -11.13 16 7 C 0.51 11.10 7.78 -10.99 -0.09 11.01 16 8 O -0.46 -12.00 13.75 5.56 0.08 -11.92 16 9 C -0.02 -0.57 4.53 -29.03 -0.13 -0.70 16 10 C -0.52 -14.92 9.48 -34.44 -0.33 -15.24 16 11 H 0.09 3.06 7.00 -52.49 -0.37 2.70 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 14 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 18 N -0.43 -8.22 7.99 -8.41 -0.07 -8.29 16 19 C 0.12 1.81 6.78 -82.44 -0.56 1.26 16 20 C -0.10 -1.21 9.78 36.00 0.35 -0.86 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 24 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 25 H 0.42 4.95 8.71 -40.82 -0.36 4.59 16 26 H 0.05 1.05 7.20 -51.93 -0.37 0.68 16 27 H 0.05 0.96 7.57 -51.93 -0.39 0.57 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.66 5.92 -51.93 -0.31 0.35 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -36.02 269.89 -5.75 -41.78 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.39 Total: 1.57 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.39 Total: 0.85 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.55 Total: -52.10 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.02 -5.75 -41.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.193 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds