Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32244 * 119.91925 * 2 1 4 4 C 1.31955 * 120.07703 * 180.27772 * 3 2 1 5 5 C 1.39237 * 119.90022 * 359.73160 * 4 3 2 6 6 N 1.39401 * 120.08105 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99516 * 174.92160 * 6 5 4 8 8 O 1.21273 * 120.00204 * 5.09361 * 7 6 5 9 9 C 1.50702 * 119.99919 * 185.08589 * 7 6 5 10 10 C 1.50699 * 109.47003 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00327 * 0.02562 * 10 9 7 12 12 C 1.37884 * 120.00098 * 179.97438 * 10 9 7 13 13 N 1.31507 * 120.00542 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99620 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47663 * 89.99721 * 14 12 10 16 16 H 1.48507 * 109.47122 * 209.99906 * 14 12 10 17 17 H 1.48500 * 109.47387 * 329.99384 * 14 12 10 18 18 N 1.32606 * 119.82991 * 0.02562 * 5 4 3 19 19 C 1.32210 * 119.92732 * 359.97438 * 18 5 4 20 20 C 1.50693 * 119.95447 * 179.97438 * 19 18 5 21 21 H 1.08997 * 109.46906 * 270.24766 * 1 2 3 22 22 H 1.09004 * 109.46902 * 30.24323 * 1 2 3 23 23 H 1.08997 * 109.47296 * 150.24094 * 1 2 3 24 24 H 1.08004 * 120.05085 * 179.71423 * 4 3 2 25 25 H 0.97000 * 120.00633 * 354.93273 * 6 5 4 26 26 H 1.08999 * 109.47080 * 300.00490 * 9 7 6 27 27 H 1.08996 * 109.47123 * 60.00717 * 9 7 6 28 28 H 0.97001 * 120.00371 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47076 * 89.99866 * 20 19 18 30 30 H 1.08998 * 109.47202 * 210.00011 * 20 19 18 31 31 H 1.09002 * 109.46924 * 330.00036 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1666 1.1462 0.0000 4 6 3.4862 1.1498 -0.0055 5 6 4.1836 -0.0553 -0.0057 6 7 5.5776 -0.0558 -0.0110 7 6 6.2513 -1.2185 0.0921 8 8 5.6481 -2.2706 0.0965 9 6 7.7543 -1.2113 0.2019 10 6 8.2573 -2.6282 0.3036 11 1 7.5587 -3.4516 0.2898 12 6 9.6097 -2.8735 0.4134 13 7 10.0487 -4.1099 0.5027 14 14 10.8183 -1.4493 0.4367 15 1 11.0369 -1.0083 1.8377 16 1 12.1098 -1.8864 -0.1519 17 1 10.2691 -0.3210 -0.3575 18 7 3.5183 -1.2024 -0.0009 19 6 2.1963 -1.1981 0.0047 20 6 1.4396 -2.5013 0.0096 21 1 -0.3633 0.0044 1.0276 22 1 -0.3633 0.8878 -0.5176 23 1 -0.3634 -0.8921 -0.5101 24 1 4.0244 2.0862 -0.0102 25 1 6.0627 0.7805 -0.0888 26 1 8.1809 -0.7372 -0.6821 27 1 8.0510 -0.6554 1.0912 28 1 11.0002 -4.2824 0.5795 29 1 1.2615 -2.8141 1.0384 30 1 0.4854 -2.3694 -0.5004 31 1 2.0248 -3.2631 -0.5056 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = -10.497339 kcal Electronic energy + Delta-G solvation = -15888.524350 eV Core-core repulsion = 13169.356417 eV Total energy + Delta-G solvation = -2719.167932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40068 -40.45935 -36.56702 -35.45349 -35.03052 -33.80326 -31.71709 -29.67168 -28.25852 -25.53982 -24.39582 -23.25763 -21.58693 -19.13864 -18.95129 -18.46420 -17.02870 -16.85143 -16.80783 -16.30301 -15.89351 -15.15949 -14.72974 -14.21413 -14.12894 -13.89749 -13.79040 -13.59147 -13.36457 -12.87282 -12.59774 -12.43603 -12.32939 -12.14344 -11.88226 -11.56690 -11.31856 -10.96230 -10.79236 -9.80885 -9.25088 -8.27214 -6.37015 -0.23183 0.17182 1.40468 1.44950 1.54988 1.77273 1.85957 2.38229 2.74550 3.06423 3.15041 3.24383 3.45442 3.91357 4.02627 4.23245 4.39142 4.57955 4.65591 4.68185 4.82773 4.91460 5.00134 5.01387 5.07685 5.31989 5.43477 5.61948 6.08281 6.27592 6.51873 6.77408 6.94542 7.22889 7.39478 8.90451 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.005464 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.859406 B = 5123.329407 C = 5638.617127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.031 3.969 3 N -0.425 5.425 4 C 0.025 3.975 5 C 0.293 3.707 6 N -0.647 5.647 7 C 0.508 3.492 8 O -0.518 6.518 9 C -0.022 4.022 10 C -0.538 4.538 11 H 0.026 0.974 12 C 0.002 3.998 13 N -0.954 5.954 14 Si 0.963 3.037 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.224 1.224 18 N -0.486 5.486 19 C 0.094 3.906 20 C -0.102 4.102 21 H 0.092 0.908 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.208 0.792 25 H 0.438 0.562 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 15.250 -1.313 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 N -0.139 5.139 4 C -0.140 4.140 5 C 0.059 3.941 6 N -0.297 5.297 7 C 0.297 3.703 8 O -0.389 6.389 9 C -0.062 4.062 10 C -0.576 4.576 11 H 0.045 0.955 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.784 3.216 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.147 1.147 18 N -0.207 5.207 19 C -0.048 4.048 20 C -0.159 4.159 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.119 0.881 24 H 0.225 0.775 25 H 0.280 0.720 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.175 14.343 -1.279 21.656 hybrid contribution 1.324 -0.009 0.074 1.326 sum -14.851 14.335 -1.205 20.676 Atomic orbital electron populations 1.20790 0.84792 1.04930 1.04384 1.22491 1.00128 0.88157 1.00180 1.68266 1.07781 1.29250 1.08568 1.23621 0.90658 0.97484 1.02234 1.19989 0.86540 0.91568 0.96035 1.43736 1.02516 1.11746 1.71722 1.21693 0.91592 0.82721 0.74333 1.90687 1.70557 1.32470 1.45190 1.19632 0.87297 0.98094 1.01130 1.21140 0.93019 0.92068 1.51389 0.95527 1.26165 1.00411 0.99384 0.93516 1.70094 1.15400 1.22441 1.51445 0.85511 0.77039 0.79174 0.79905 1.18657 1.21324 1.14661 1.68316 1.09683 1.29232 1.13507 1.22607 0.88801 0.98675 0.94704 1.20893 0.99859 0.90884 1.04262 0.88989 0.89866 0.88131 0.77505 0.72031 0.90349 0.90592 0.92261 0.89065 0.86234 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.78 71.24 0.70 -0.62 16 2 C 0.03 0.77 6.78 42.49 0.29 1.06 16 3 N -0.42 -10.90 10.41 -182.77 -1.90 -12.80 16 4 C 0.03 0.62 11.09 84.91 0.94 1.57 16 5 C 0.29 9.65 7.43 132.89 0.99 10.64 16 6 N -0.65 -20.65 5.39 -308.13 -1.66 -22.31 16 7 C 0.51 22.56 7.78 87.66 0.68 23.25 16 8 O -0.52 -28.77 13.75 -3.01 -0.04 -28.81 16 9 C -0.02 -0.97 4.53 29.10 0.13 -0.84 16 10 C -0.54 -32.25 9.48 25.60 0.24 -32.00 16 11 H 0.03 1.89 7.00 -2.91 -0.02 1.87 16 12 C 0.00 0.10 5.47 84.66 0.46 0.56 16 13 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 14 Si 0.96 41.20 27.47 68.60 1.88 43.09 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.22 -8.04 6.54 99.48 0.65 -7.39 16 18 N -0.49 -18.82 7.99 -180.52 -1.44 -20.26 16 19 C 0.09 2.80 6.78 42.50 0.29 3.09 16 20 C -0.10 -2.32 9.78 71.23 0.70 -1.62 16 21 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.10 1.00 5.93 -2.39 -0.01 0.99 16 24 H 0.21 3.15 8.06 -2.91 -0.02 3.13 16 25 H 0.44 9.11 8.71 -92.71 -0.81 8.30 16 26 H 0.08 3.07 7.20 -2.39 -0.02 3.05 16 27 H 0.08 2.96 7.57 -2.39 -0.02 2.94 16 28 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.12 1.67 5.92 -2.39 -0.01 1.66 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -86.11 269.89 2.85 -83.25 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.30 Total: 13.70 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.42 Total: 5.07 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -4.71 Total: -116.29 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.04 Total: -28.81 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.88 Total: 43.09 kcal Total: -86.11 2.85 -83.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.755 kcal (2) G-P(sol) polarization free energy of solvation -86.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds