Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46895 * 2 1 4 4 N 1.31979 * 120.04673 * 90.00247 * 3 2 1 5 5 C 1.32216 * 120.07869 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.16477 * 359.97438 * 5 4 3 7 7 N 1.32183 * 120.09248 * 0.02562 * 6 5 4 8 8 C 1.32641 * 119.92001 * 0.02562 * 7 6 5 9 9 N 1.39411 * 120.07769 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99985 * 359.97438 * 9 8 7 11 11 O 1.21276 * 120.00097 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99680 * 180.02562 * 10 9 8 13 13 C 1.50705 * 109.46870 * 180.02562 * 12 10 9 14 14 H 1.07990 * 119.99970 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00003 * 179.97438 * 13 12 10 16 16 N 1.31523 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00195 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46979 * 90.00204 * 17 15 13 19 19 H 1.48505 * 109.46904 * 210.00390 * 17 15 13 20 20 H 1.48500 * 109.47026 * 330.00118 * 17 15 13 21 21 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47154 * 299.99677 * 1 2 3 23 23 H 1.08999 * 109.47572 * 59.99756 * 1 2 3 24 24 H 1.08998 * 109.47167 * 239.99856 * 2 1 3 25 25 H 1.08995 * 109.47131 * 120.00088 * 2 1 3 26 26 H 1.08002 * 119.92289 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.95859 * 179.74792 * 6 5 4 28 28 H 0.96995 * 119.99475 * 180.02562 * 9 8 7 29 29 H 1.08999 * 109.47439 * 300.00099 * 12 10 9 30 30 H 1.08999 * 109.47326 * 60.00028 * 12 10 9 31 31 H 0.96998 * 119.99685 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2525 2.0438 1.1424 5 6 2.6927 3.2906 1.1432 6 6 2.9245 3.9462 -0.0519 7 7 2.7061 3.3286 -1.1999 8 6 2.2635 2.0782 -1.2048 9 7 2.0315 1.4238 -2.4137 10 6 2.2565 2.0619 -3.5793 11 8 2.6611 3.2051 -3.5765 12 6 2.0052 1.3546 -4.8861 13 6 2.3326 2.2804 -6.0293 14 1 2.6876 3.2805 -5.8296 15 6 2.1800 1.8500 -7.3303 16 7 1.7481 0.6317 -7.5736 17 14 2.5865 2.9971 -8.7474 18 1 4.0139 2.8333 -9.1230 19 1 1.7270 2.6681 -9.9128 20 1 2.3418 4.4020 -8.3328 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 2.8726 3.7979 2.0795 27 1 3.2801 4.9660 -0.0474 28 1 1.7076 0.5096 -2.4158 29 1 2.6350 0.4671 -4.9459 30 1 0.9571 1.0610 -4.9446 31 1 1.6404 0.3291 -8.4888 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = 11.256658 kcal Electronic energy + Delta-G solvation = -16037.499138 eV Core-core repulsion = 13319.274530 eV Total energy + Delta-G solvation = -2718.224608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19956 -38.69788 -35.25156 -34.64710 -33.00567 -32.23531 -29.87966 -28.64601 -25.20935 -24.63820 -22.98626 -21.82975 -20.07823 -18.14317 -17.12306 -16.28490 -16.06296 -15.41018 -15.25732 -14.53708 -14.45661 -14.06421 -13.93868 -13.32123 -12.87605 -12.47733 -12.17287 -11.66975 -11.60410 -11.29281 -11.17091 -11.01800 -10.82873 -10.66420 -10.15857 -10.01625 -9.36397 -9.34692 -8.49829 -8.37881 -8.08848 -6.12695 -4.12922 0.94149 1.36945 3.22488 3.32111 3.37591 3.46019 3.46349 4.01643 4.15483 4.40907 4.47586 4.54342 4.98554 5.06500 5.20881 5.26059 5.28126 5.36910 5.66199 5.75182 5.91216 5.99531 6.09556 6.31148 6.77516 7.04017 7.18698 7.38148 7.67149 7.89911 8.05577 8.29185 8.97325 9.00129 9.52633 10.99554 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038285 B = 0.005942 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.180791 B = 4710.721843 C = 5348.287746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.036 3.964 4 N -0.414 5.414 5 C -0.007 4.007 6 C 0.082 3.918 7 N -0.434 5.434 8 C 0.334 3.666 9 N -0.665 5.665 10 C 0.499 3.501 11 O -0.472 6.472 12 C 0.009 3.991 13 C -0.511 4.511 14 H 0.076 0.924 15 C 0.057 3.943 16 N -0.900 5.900 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.167 0.833 28 H 0.415 0.585 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -1.425 15.612 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.111 4.111 4 N -0.129 5.129 5 C -0.167 4.167 6 C -0.080 4.080 7 N -0.154 5.154 8 C 0.098 3.902 9 N -0.313 5.313 10 C 0.288 3.712 11 O -0.339 6.339 12 C -0.030 4.030 13 C -0.550 4.550 14 H 0.094 0.906 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.196 1.196 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.184 0.816 28 H 0.253 0.747 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.834 -0.694 15.278 15.316 hybrid contribution 0.086 0.153 -0.721 0.742 sum -0.748 -0.541 14.557 14.587 Atomic orbital electron populations 1.21753 0.93902 1.02367 1.02555 1.20371 0.96679 0.89907 1.03710 1.21666 1.03058 0.98476 0.87920 1.68072 1.07841 1.08992 1.27963 1.23435 1.01644 0.92004 0.99645 1.23736 0.95310 1.00972 0.87943 1.68651 1.11239 1.06780 1.28769 1.19567 0.93006 0.90228 0.87411 1.44558 1.65621 1.17543 1.03569 1.22551 0.75850 0.87687 0.85087 1.90655 1.39584 1.17386 1.86300 1.19299 0.99525 0.97306 0.86913 1.21131 1.44327 1.00195 0.89339 0.90559 1.24997 0.95023 0.95388 0.99053 1.69952 1.46516 1.16915 1.20517 0.86393 0.78249 0.81171 0.81096 1.20536 1.21202 1.19606 0.91524 0.92230 0.92403 0.90321 0.89443 0.81824 0.81557 0.74699 0.93038 0.93014 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.07 -0.74 5.81 -27.89 -0.16 -0.90 16 3 C 0.04 0.52 6.06 -82.18 -0.50 0.02 16 4 N -0.41 -5.85 10.41 -9.13 -0.10 -5.94 16 5 C -0.01 -0.09 11.21 -17.38 -0.19 -0.28 16 6 C 0.08 1.17 11.22 -17.39 -0.20 0.97 16 7 N -0.43 -8.23 8.05 -12.17 -0.10 -8.33 16 8 C 0.33 5.82 7.41 -154.40 -1.14 4.67 16 9 N -0.66 -11.76 5.30 -11.33 -0.06 -11.82 16 10 C 0.50 11.32 7.79 -10.99 -0.09 11.24 16 11 O -0.47 -12.36 13.73 5.56 0.08 -12.28 16 12 C 0.01 0.22 5.46 -29.03 -0.16 0.06 16 13 C -0.51 -14.58 8.92 -34.44 -0.31 -14.88 16 14 H 0.08 2.28 6.75 -52.49 -0.35 1.92 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.76 6.56 -51.93 -0.34 0.42 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.41 5.81 6.70 -40.82 -0.27 5.54 16 29 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -34.02 274.16 -6.29 -40.31 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.49 Total: 0.83 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.48 Total: 1.31 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.48 Total: -51.16 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.02 -6.29 -40.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.564 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds