Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46895 * 2 1 4 4 N 1.31979 * 120.04673 * 90.00247 * 3 2 1 5 5 C 1.32216 * 120.07869 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.16477 * 359.97438 * 5 4 3 7 7 N 1.32183 * 120.09248 * 0.02562 * 6 5 4 8 8 C 1.32641 * 119.92001 * 0.02562 * 7 6 5 9 9 N 1.39411 * 120.07769 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99985 * 359.97438 * 9 8 7 11 11 O 1.21276 * 120.00097 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99680 * 180.02562 * 10 9 8 13 13 C 1.50705 * 109.46870 * 180.02562 * 12 10 9 14 14 H 1.07990 * 119.99970 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00003 * 179.97438 * 13 12 10 16 16 N 1.31523 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00195 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46979 * 90.00204 * 17 15 13 19 19 H 1.48505 * 109.46904 * 210.00390 * 17 15 13 20 20 H 1.48500 * 109.47026 * 330.00118 * 17 15 13 21 21 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47154 * 299.99677 * 1 2 3 23 23 H 1.08999 * 109.47572 * 59.99756 * 1 2 3 24 24 H 1.08998 * 109.47167 * 239.99856 * 2 1 3 25 25 H 1.08995 * 109.47131 * 120.00088 * 2 1 3 26 26 H 1.08002 * 119.92289 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.95859 * 179.74792 * 6 5 4 28 28 H 0.96995 * 119.99475 * 180.02562 * 9 8 7 29 29 H 1.08999 * 109.47439 * 300.00099 * 12 10 9 30 30 H 1.08999 * 109.47326 * 60.00028 * 12 10 9 31 31 H 0.96998 * 119.99685 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2525 2.0438 1.1424 5 6 2.6927 3.2906 1.1432 6 6 2.9245 3.9462 -0.0519 7 7 2.7061 3.3286 -1.1999 8 6 2.2635 2.0782 -1.2048 9 7 2.0315 1.4238 -2.4137 10 6 2.2565 2.0619 -3.5793 11 8 2.6611 3.2051 -3.5765 12 6 2.0052 1.3546 -4.8861 13 6 2.3326 2.2804 -6.0293 14 1 2.6876 3.2805 -5.8296 15 6 2.1800 1.8500 -7.3303 16 7 1.7481 0.6317 -7.5736 17 14 2.5865 2.9971 -8.7474 18 1 4.0139 2.8333 -9.1230 19 1 1.7270 2.6681 -9.9128 20 1 2.3418 4.4020 -8.3328 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 2.8726 3.7979 2.0795 27 1 3.2801 4.9660 -0.0474 28 1 1.7076 0.5096 -2.4158 29 1 2.6350 0.4671 -4.9459 30 1 0.9571 1.0610 -4.9446 31 1 1.6404 0.3291 -8.4888 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = -12.423420 kcal Electronic energy + Delta-G solvation = -16038.525983 eV Core-core repulsion = 13319.274530 eV Total energy + Delta-G solvation = -2719.251453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41859 -40.32113 -36.52643 -35.90359 -35.11552 -33.43735 -31.38958 -30.22873 -26.53749 -26.04125 -24.60044 -22.80291 -21.65180 -19.51120 -18.69086 -18.18294 -17.11763 -17.03253 -16.65334 -16.41761 -15.64765 -15.45408 -15.04696 -14.70856 -14.22286 -14.12925 -13.49190 -13.30937 -12.85528 -12.69523 -12.49318 -12.42979 -12.37516 -12.05354 -11.97778 -11.49124 -11.48279 -10.92331 -10.63892 -9.77759 -9.34237 -8.27645 -6.34849 -0.20342 0.19142 1.40291 1.40584 1.53016 1.80588 1.87025 2.41880 2.80395 3.08338 3.17212 3.30700 3.39399 3.98969 4.14146 4.25800 4.37470 4.41017 4.41881 4.79750 4.97819 5.01433 5.08499 5.14449 5.20086 5.34530 5.53166 5.71460 5.92486 6.17699 6.51195 6.76326 6.93832 7.28092 7.39655 8.84309 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038285 B = 0.005942 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.180791 B = 4710.721843 C = 5348.287746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C 0.049 3.951 4 N -0.426 5.426 5 C 0.018 3.982 6 C 0.067 3.933 7 N -0.484 5.484 8 C 0.298 3.702 9 N -0.650 5.650 10 C 0.507 3.493 11 O -0.516 6.516 12 C 0.013 3.987 13 C -0.539 4.539 14 H 0.054 0.946 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.276 1.276 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.210 0.790 27 H 0.194 0.806 28 H 0.430 0.570 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -1.725 17.065 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.097 4.097 4 N -0.140 5.140 5 C -0.142 4.142 6 C -0.093 4.093 7 N -0.204 5.204 8 C 0.064 3.936 9 N -0.300 5.300 10 C 0.296 3.704 11 O -0.387 6.387 12 C -0.026 4.026 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.201 1.201 21 H 0.109 0.891 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.227 0.773 27 H 0.211 0.789 28 H 0.271 0.729 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.899 -1.048 16.781 16.838 hybrid contribution 0.109 0.274 -0.987 1.030 sum -0.790 -0.774 15.794 15.833 Atomic orbital electron populations 1.21732 0.93031 1.03704 1.01672 1.20541 0.97286 0.87927 1.05035 1.22079 1.01247 0.99605 0.86777 1.68257 1.08580 1.09803 1.27360 1.24165 0.98107 0.91220 1.00747 1.24266 0.95471 1.02193 0.87386 1.68480 1.12223 1.08082 1.31652 1.19709 0.95579 0.90649 0.87679 1.43967 1.65292 1.18001 1.02774 1.22003 0.75480 0.86960 0.85925 1.90625 1.41958 1.18988 1.87177 1.19119 0.99220 0.96685 0.87593 1.21323 1.45176 1.00046 0.91223 0.92776 1.25731 0.94661 0.96893 1.01210 1.70013 1.46688 1.17969 1.21386 0.85471 0.78527 0.78865 0.78324 1.19691 1.19737 1.20113 0.89108 0.92594 0.93773 0.89252 0.87832 0.77315 0.78915 0.72860 0.93135 0.93128 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.83 16 2 C -0.07 -1.36 5.81 29.85 0.17 -1.18 16 3 C 0.05 1.33 6.06 42.76 0.26 1.59 16 4 N -0.43 -10.92 10.41 -182.81 -1.90 -12.82 16 5 C 0.02 0.39 11.21 84.64 0.95 1.34 16 6 C 0.07 1.83 11.22 84.65 0.95 2.78 16 7 N -0.48 -18.39 8.05 -192.41 -1.55 -19.94 16 8 C 0.30 10.33 7.41 132.86 0.98 11.31 16 9 N -0.65 -23.27 5.30 -308.14 -1.63 -24.91 16 10 C 0.51 23.73 7.79 87.66 0.68 24.42 16 11 O -0.52 -28.10 13.73 -3.02 -0.04 -28.14 16 12 C 0.01 0.68 5.46 29.10 0.16 0.84 16 13 C -0.54 -31.57 8.92 25.60 0.23 -31.34 16 14 H 0.05 3.36 6.75 -2.92 -0.02 3.34 16 15 C 0.01 0.81 5.46 84.65 0.46 1.27 16 16 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 17 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.55 6.56 -2.39 -0.02 1.53 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.43 11.98 6.70 -92.71 -0.62 11.36 16 29 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -74.55 274.16 3.27 -71.28 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.53 Total: 10.83 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.56 Total: 9.18 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.80 Total: -110.27 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.04 Total: -28.14 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.55 3.27 -71.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.854 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds