Wall clock time and date at job start Sun Mar 29 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.34770 * 120.00256 * 84.99846 * 4 2 1 6 6 O 1.21283 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.50705 * 109.47119 * 179.97438 * 7 5 4 9 9 H 1.08005 * 120.00034 * 0.02562 * 8 7 5 10 10 C 1.37871 * 120.00084 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00189 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00148 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47323 * 59.99969 * 12 10 8 14 14 H 1.48500 * 109.47426 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46779 * 300.00168 * 12 10 8 16 16 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 17 17 C 1.38599 * 120.79322 * 79.72454 * 16 2 1 18 18 N 1.32339 * 119.10067 * 179.72022 * 17 16 2 19 19 C 1.31796 * 120.81634 * 0.56053 * 18 17 16 20 20 N 1.31800 * 121.75421 * 359.71632 * 19 18 17 21 21 C 1.32326 * 120.81848 * 359.97438 * 20 19 18 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 26 26 H 1.08991 * 109.47241 * 299.99575 * 7 5 4 27 27 H 1.09000 * 109.47273 * 60.00364 * 7 5 4 28 28 H 0.96994 * 120.00248 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.45537 * 0.02562 * 17 16 2 30 30 H 1.08004 * 119.12453 * 179.72501 * 19 18 17 31 31 H 1.08002 * 120.44950 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8582 1.1586 -2.4116 7 6 2.6490 -0.7286 -3.5877 8 6 2.6992 0.2397 -4.7415 9 1 2.3982 1.2670 -4.5978 10 6 3.1303 -0.1855 -5.9801 11 7 3.4973 -1.4362 -6.1550 12 14 3.1932 1.0149 -7.4100 13 1 4.1096 2.1348 -7.0762 14 1 3.6876 0.3148 -8.6227 15 1 1.8319 1.5493 -7.6678 16 6 2.0324 -0.7104 1.2304 17 6 2.0687 -2.0948 1.2854 18 7 2.5215 -2.6839 2.3805 19 6 2.9238 -1.9710 3.4135 20 7 2.8983 -0.6533 3.3991 21 6 2.4641 0.0048 2.3363 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 2.2491 -1.6317 -1.1527 26 1 3.6480 -1.1210 -3.3987 27 1 1.9760 -1.5503 -3.8327 28 1 3.8002 -1.7355 -7.0264 29 1 1.7367 -2.6849 0.4440 30 1 3.2841 -2.4802 4.2952 31 1 2.4462 1.0846 2.3308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:36 Heat of formation + Delta-G solvation = 1.459646 kcal Electronic energy + Delta-G solvation = -15790.123389 eV Core-core repulsion = 13071.473951 eV Total energy + Delta-G solvation = -2718.649439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28571 -38.90021 -35.72661 -33.89298 -32.95947 -31.95710 -29.90303 -28.47176 -25.09104 -24.84614 -23.67260 -21.40933 -19.82768 -17.90688 -17.56626 -16.52536 -16.35748 -15.25812 -15.02073 -14.57837 -14.28171 -14.11150 -13.81617 -13.68903 -13.06294 -12.78825 -12.25320 -12.09932 -11.73223 -11.19273 -11.00874 -10.88222 -10.76856 -10.63139 -9.99356 -9.69528 -9.44557 -9.32439 -8.73504 -8.66475 -8.44766 -6.08397 -4.08402 0.66722 0.86565 3.35691 3.38173 3.42477 3.52429 3.61151 3.72933 3.93992 4.06128 4.39060 4.45602 4.46994 4.76703 5.16588 5.28915 5.31744 5.36107 5.56740 5.69275 5.88339 6.14115 6.23121 6.29951 6.72912 6.89008 7.13125 7.27767 7.85554 7.91012 7.96925 8.34693 9.01824 9.12245 9.56845 11.03885 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.004939 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.525667 B = 5667.826146 C = 5919.906252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.189 3.811 3 H 0.098 0.902 4 N -0.746 5.746 5 C 0.518 3.482 6 O -0.542 6.542 7 C 0.005 3.995 8 C -0.510 4.510 9 H 0.075 0.925 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.187 4.187 17 C 0.154 3.846 18 N -0.516 5.516 19 C 0.284 3.716 20 N -0.518 5.518 21 C 0.157 3.843 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.394 0.606 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.262 0.738 29 H 0.168 0.832 30 H 0.195 0.805 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -1.803 16.084 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.083 3.917 3 H 0.116 0.884 4 N -0.401 5.401 5 C 0.309 3.691 6 O -0.417 6.417 7 C -0.034 4.034 8 C -0.548 4.548 9 H 0.093 0.907 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.730 3.270 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.192 4.192 17 C -0.012 4.012 18 N -0.229 5.229 19 C -0.003 4.003 20 N -0.231 5.231 21 C -0.009 4.009 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.228 0.772 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.185 0.815 30 H 0.212 0.788 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.216 -1.525 16.702 17.077 hybrid contribution -0.089 0.399 -1.459 1.515 sum -3.305 -1.126 15.243 15.638 Atomic orbital electron populations 1.22179 0.94212 1.02330 1.02841 1.19521 0.94103 0.96924 0.81185 0.88367 1.46499 1.70262 1.13870 1.09486 1.22059 0.75210 0.87605 0.84265 1.90540 1.49482 1.16859 1.84831 1.19248 0.97869 0.97235 0.89038 1.21111 1.43668 0.97102 0.92947 0.90714 1.25003 0.95208 0.95387 0.98957 1.69944 1.44698 1.15376 1.23999 0.86480 0.78606 0.80896 0.81012 1.20123 1.21347 1.20108 1.21916 1.01891 0.96600 0.98757 1.23081 0.90832 0.91811 0.95471 1.68456 1.11455 1.41847 1.01133 1.24996 0.92113 0.86919 0.96302 1.68456 1.15625 1.10945 1.28096 1.23156 0.89276 1.01167 0.87326 0.92437 0.92072 0.90816 0.77157 0.93447 0.93344 0.92810 0.81500 0.78799 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.47 37.16 0.35 -1.53 16 2 C 0.19 2.48 2.81 -69.08 -0.19 2.28 16 3 H 0.10 1.41 7.48 -51.93 -0.39 1.02 16 4 N -0.75 -11.69 5.04 -54.93 -0.28 -11.96 16 5 C 0.52 11.09 7.79 -10.99 -0.09 11.01 16 6 O -0.54 -13.28 15.12 5.55 0.08 -13.19 16 7 C 0.01 0.13 5.46 -29.03 -0.16 -0.03 16 8 C -0.51 -14.49 8.92 -34.44 -0.31 -14.80 16 9 H 0.07 2.21 6.75 -52.48 -0.35 1.85 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 12 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.19 -2.12 4.97 -104.36 -0.52 -2.63 16 17 C 0.15 1.72 10.34 -17.20 -0.18 1.54 16 18 N -0.52 -6.04 10.44 -14.58 -0.15 -6.19 16 19 C 0.28 3.02 12.29 -92.15 -1.13 1.88 16 20 N -0.52 -5.94 10.44 -14.58 -0.15 -6.09 16 21 C 0.16 1.70 10.97 -17.21 -0.19 1.51 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.39 5.27 6.97 -40.82 -0.28 4.99 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.17 1.57 7.03 -52.49 -0.37 1.20 16 30 H 0.20 1.41 8.06 -52.48 -0.42 0.98 16 31 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -32.80 277.02 -6.61 -39.40 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.49 Total: 1.64 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.51 Total: 0.70 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.16 Total: -49.58 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.80 -6.61 -39.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.864 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds