Wall clock time and date at job start Sun Mar 29 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.34770 * 120.00256 * 84.99846 * 4 2 1 6 6 O 1.21283 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.50705 * 109.47119 * 179.97438 * 7 5 4 9 9 H 1.08005 * 120.00034 * 0.02562 * 8 7 5 10 10 C 1.37871 * 120.00084 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00189 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00148 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47323 * 59.99969 * 12 10 8 14 14 H 1.48500 * 109.47426 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46779 * 300.00168 * 12 10 8 16 16 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 17 17 C 1.38599 * 120.79322 * 79.72454 * 16 2 1 18 18 N 1.32339 * 119.10067 * 179.72022 * 17 16 2 19 19 C 1.31796 * 120.81634 * 0.56053 * 18 17 16 20 20 N 1.31800 * 121.75421 * 359.71632 * 19 18 17 21 21 C 1.32326 * 120.81848 * 359.97438 * 20 19 18 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 26 26 H 1.08991 * 109.47241 * 299.99575 * 7 5 4 27 27 H 1.09000 * 109.47273 * 60.00364 * 7 5 4 28 28 H 0.96994 * 120.00248 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.45537 * 0.02562 * 17 16 2 30 30 H 1.08004 * 119.12453 * 179.72501 * 19 18 17 31 31 H 1.08002 * 120.44950 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8582 1.1586 -2.4116 7 6 2.6490 -0.7286 -3.5877 8 6 2.6992 0.2397 -4.7415 9 1 2.3982 1.2670 -4.5978 10 6 3.1303 -0.1855 -5.9801 11 7 3.4973 -1.4362 -6.1550 12 14 3.1932 1.0149 -7.4100 13 1 4.1096 2.1348 -7.0762 14 1 3.6876 0.3148 -8.6227 15 1 1.8319 1.5493 -7.6678 16 6 2.0324 -0.7104 1.2304 17 6 2.0687 -2.0948 1.2854 18 7 2.5215 -2.6839 2.3805 19 6 2.9238 -1.9710 3.4135 20 7 2.8983 -0.6533 3.3991 21 6 2.4641 0.0048 2.3363 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 2.2491 -1.6317 -1.1527 26 1 3.6480 -1.1210 -3.3987 27 1 1.9760 -1.5503 -3.8327 28 1 3.8002 -1.7355 -7.0264 29 1 1.7367 -2.6849 0.4440 30 1 3.2841 -2.4802 4.2952 31 1 2.4462 1.0846 2.3308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:36 Heat of formation + Delta-G solvation = -20.972054 kcal Electronic energy + Delta-G solvation = -15791.096101 eV Core-core repulsion = 13071.473951 eV Total energy + Delta-G solvation = -2719.622150 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17133 -40.47015 -37.03544 -35.07985 -34.74263 -33.25258 -31.25525 -30.10910 -26.22893 -25.80187 -25.34218 -22.61885 -21.32872 -18.76891 -18.64350 -18.37528 -17.89272 -16.76168 -16.45599 -16.12355 -15.70299 -15.25334 -14.79603 -14.59345 -14.44402 -14.17520 -14.09612 -13.37133 -13.12187 -12.81785 -12.67666 -12.51783 -12.02818 -11.87302 -11.76110 -11.45461 -10.71754 -10.61431 -10.45078 -10.28269 -10.02394 -8.24079 -6.31151 -0.18849 0.01766 1.41778 1.44016 1.52606 1.88788 2.26768 2.47692 2.75895 3.11756 3.16471 3.23280 3.48375 3.58118 3.84528 4.20152 4.33555 4.44822 4.48243 4.71020 4.77771 4.97553 5.10530 5.21718 5.28005 5.35494 5.55065 5.74630 5.88761 6.06180 6.66438 6.83866 7.02351 7.34785 7.49842 8.87743 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.004939 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.525667 B = 5667.826146 C = 5919.906252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.194 3.806 3 H 0.088 0.912 4 N -0.725 5.725 5 C 0.525 3.475 6 O -0.577 6.577 7 C 0.006 3.994 8 C -0.536 4.536 9 H 0.057 0.943 10 C 0.010 3.990 11 N -0.925 5.925 12 Si 0.963 3.037 13 H -0.273 1.273 14 H -0.276 1.276 15 H -0.272 1.272 16 C -0.191 4.191 17 C 0.152 3.848 18 N -0.531 5.531 19 C 0.284 3.716 20 N -0.531 5.531 21 C 0.158 3.842 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.047 0.953 25 H 0.407 0.593 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.181 0.819 30 H 0.224 0.776 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -1.950 17.028 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 H 0.106 0.894 4 N -0.379 5.379 5 C 0.314 3.686 6 O -0.456 6.456 7 C -0.033 4.033 8 C -0.574 4.574 9 H 0.075 0.925 10 C -0.188 4.188 11 N -0.565 5.565 12 Si 0.787 3.213 13 H -0.198 1.198 14 H -0.201 1.201 15 H -0.197 1.197 16 C -0.196 4.196 17 C -0.014 4.014 18 N -0.245 5.245 19 C -0.003 4.003 20 N -0.245 5.245 21 C -0.008 4.008 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.244 0.756 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.198 0.802 30 H 0.240 0.760 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.333 -1.713 17.690 18.083 hybrid contribution -0.043 0.388 -1.651 1.696 sum -3.376 -1.325 16.039 16.444 Atomic orbital electron populations 1.22123 0.93051 1.03122 1.02711 1.19572 0.94938 0.96240 0.80469 0.89436 1.46162 1.68561 1.14330 1.08839 1.21360 0.75258 0.86913 0.85050 1.90521 1.51335 1.18149 1.85591 1.19091 0.97536 0.96631 0.90076 1.21355 1.44240 0.97072 0.94776 0.92488 1.25770 0.94639 0.97083 1.01344 1.70019 1.44981 1.16686 1.24797 0.85536 0.78721 0.78863 0.78130 1.19810 1.20092 1.19686 1.21644 1.03183 0.96621 0.98110 1.23332 0.90310 0.91891 0.95873 1.68536 1.12217 1.42160 1.01560 1.25636 0.90913 0.86890 0.96845 1.68555 1.16236 1.11400 1.28271 1.23504 0.88181 1.02209 0.86912 0.91192 0.89674 0.93430 0.75607 0.94188 0.93776 0.92450 0.80206 0.75960 0.79377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.47 71.98 0.68 -2.72 16 2 C 0.19 4.82 2.81 44.25 0.12 4.94 16 3 H 0.09 2.43 7.48 -2.39 -0.02 2.41 16 4 N -0.72 -22.16 5.04 -446.09 -2.25 -24.41 16 5 C 0.52 22.65 7.79 87.66 0.68 23.33 16 6 O -0.58 -28.75 15.12 -3.04 -0.05 -28.80 16 7 C 0.01 0.31 5.46 29.10 0.16 0.46 16 8 C -0.54 -30.99 8.92 25.60 0.23 -30.76 16 9 H 0.06 3.44 6.75 -2.91 -0.02 3.43 16 10 C 0.01 0.58 5.46 84.65 0.46 1.04 16 11 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 12 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 16 C -0.19 -3.95 4.97 -19.69 -0.10 -4.05 16 17 C 0.15 3.08 10.34 84.70 0.88 3.95 16 18 N -0.53 -11.31 10.44 -200.03 -2.09 -13.39 16 19 C 0.28 5.36 12.29 180.88 2.22 7.58 16 20 N -0.53 -10.99 10.44 -200.04 -2.09 -13.08 16 21 C 0.16 3.09 10.97 84.70 0.93 4.02 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 25 H 0.41 10.40 6.97 -92.70 -0.65 9.75 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.18 3.00 7.03 -2.91 -0.02 2.98 16 30 H 0.22 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -69.88 277.02 2.61 -67.27 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.50 Total: 11.13 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.27 Total: 7.79 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.14 Total: -104.21 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.88 2.61 -67.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.296 kcal (2) G-P(sol) polarization free energy of solvation -69.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds