Wall clock time and date at job start Sun Mar 29 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 N 1.46507 * 109.47476 * 89.99510 * 6 5 4 8 8 C 1.34775 * 120.00290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99547 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.50698 * 109.47285 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00199 * 359.97438 * 11 10 8 13 13 C 1.37882 * 120.00185 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47337 * 59.99786 * 15 13 11 17 17 H 1.48509 * 109.46912 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47377 * 299.99448 * 15 13 11 19 19 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 20 20 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 21 21 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 22 22 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 23 23 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 24 24 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46989 * 209.99307 * 6 5 4 26 26 H 1.08997 * 109.47678 * 329.99289 * 6 5 4 27 27 H 0.97002 * 119.99674 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47489 * 300.00507 * 10 8 7 29 29 H 1.08998 * 109.46973 * 60.00382 * 10 8 7 30 30 H 0.97001 * 119.99838 * 179.97438 * 14 13 11 31 31 H 1.08007 * 120.44813 * 180.29354 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 7 6.1817 -0.0029 1.3684 8 6 7.5077 -0.0039 1.6095 9 8 8.2922 -0.0019 0.6844 10 6 8.0157 -0.0064 3.0282 11 6 9.5227 -0.0064 3.0223 12 1 10.0590 -0.0053 2.0849 13 6 10.2168 -0.0091 4.2136 14 7 9.5637 -0.0110 5.3551 15 14 12.0848 -0.0099 4.2062 16 1 12.5775 1.2037 3.5065 17 1 12.5853 -0.0134 5.6043 18 1 12.5765 -1.2212 3.5019 19 6 3.4712 -1.1904 0.0013 20 7 2.1484 -1.1514 0.0005 21 1 -0.3632 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.9907 2.1374 0.0001 25 1 6.0492 -0.8888 -0.5280 26 1 6.0492 0.8911 -0.5242 27 1 5.5543 -0.0049 2.1082 28 1 7.6548 0.8829 3.5450 29 1 7.6540 -0.8970 3.5420 30 1 10.0520 -0.0132 6.1933 31 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:50 Heat of formation + Delta-G solvation = -1.426267 kcal Electronic energy + Delta-G solvation = -15383.386102 eV Core-core repulsion = 12664.611521 eV Total energy + Delta-G solvation = -2718.774581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.30473 -38.70452 -35.25543 -33.90863 -32.95000 -32.72486 -29.85690 -28.58662 -25.47922 -24.85880 -23.35146 -21.95918 -19.78519 -17.94822 -16.99840 -16.43557 -16.22784 -15.55771 -15.00031 -14.56153 -14.48835 -13.81572 -13.80850 -13.39930 -12.92240 -12.72314 -12.64592 -12.56875 -12.09616 -11.18001 -11.06266 -11.01460 -10.81217 -10.62117 -9.98672 -9.69781 -9.42589 -9.31601 -8.67644 -8.61475 -8.43765 -6.07827 -4.07801 0.59583 0.88309 3.36234 3.38509 3.41007 3.45439 3.63348 3.72997 3.93768 3.99366 4.42332 4.47846 4.54197 4.70205 5.03315 5.23600 5.26851 5.30417 5.54331 5.59707 5.71070 5.86836 6.20528 6.26761 6.74967 6.88553 7.14275 7.28867 7.87124 7.92475 7.98777 8.36513 9.02608 9.13932 9.57373 11.04483 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060571 B = 0.004158 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.159482 B = 6731.706662 C = 6901.287550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.313 3.687 3 N -0.520 5.520 4 C 0.169 3.831 5 C -0.211 4.211 6 C 0.170 3.830 7 N -0.747 5.747 8 C 0.516 3.484 9 O -0.543 6.543 10 C 0.006 3.994 11 C -0.510 4.510 12 H 0.075 0.925 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.168 3.832 20 N -0.520 5.520 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.171 0.829 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.396 0.604 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.262 0.738 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 0.019 -8.997 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.235 5.235 4 C 0.002 3.998 5 C -0.215 4.215 6 C 0.045 3.955 7 N -0.403 5.403 8 C 0.306 3.694 9 O -0.419 6.419 10 C -0.033 4.033 11 C -0.549 4.549 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.201 1.201 19 C 0.002 3.998 20 N -0.234 5.234 21 H 0.103 0.897 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.188 0.812 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.230 0.770 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.743 0.020 -9.488 19.244 hybrid contribution 1.622 -0.004 0.463 1.687 sum -15.121 0.017 -9.025 17.609 Atomic orbital electron populations 1.20566 0.85727 1.04228 1.03820 1.23337 0.98317 0.83627 0.90133 1.68322 1.09967 1.30434 1.14726 1.23269 0.89318 0.98522 0.88680 1.21807 0.98688 0.95826 1.05196 1.19881 0.86080 1.03305 0.86239 1.46431 1.08328 1.79004 1.06508 1.22071 0.79957 0.72989 0.94346 1.90547 1.55466 1.48836 1.47033 1.19242 0.98146 0.99541 0.86419 1.21123 0.89910 1.50413 0.93418 0.90701 1.25014 0.99086 0.95151 0.95346 1.69950 1.35817 1.50962 0.97322 0.86471 0.84883 0.78881 0.76709 1.20093 1.21355 1.20104 1.23268 0.89320 0.98525 0.88683 1.68326 1.09963 1.30431 1.14725 0.89665 0.89587 0.89586 0.81185 0.90648 0.90645 0.77040 0.93405 0.93411 0.92811 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.32 36.01 0.37 -0.29 16 2 C 0.31 3.58 7.64 -157.19 -1.20 2.38 16 3 N -0.52 -6.27 10.33 -10.72 -0.11 -6.38 16 4 C 0.17 1.88 11.01 -17.20 -0.19 1.69 16 5 C -0.21 -2.37 5.28 -104.36 -0.55 -2.92 16 6 C 0.17 2.23 5.85 -5.19 -0.03 2.20 16 7 N -0.75 -11.96 5.55 -61.47 -0.34 -12.30 16 8 C 0.52 11.26 7.82 -10.99 -0.09 11.17 16 9 O -0.54 -13.63 15.46 5.55 0.09 -13.54 16 10 C 0.01 0.14 5.46 -29.04 -0.16 -0.02 16 11 C -0.51 -14.64 8.92 -34.44 -0.31 -14.95 16 12 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 15 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.17 1.88 11.01 -17.20 -0.19 1.69 16 20 N -0.52 -6.27 10.34 -10.72 -0.11 -6.38 16 21 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 26 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 27 H 0.40 5.61 8.46 -40.82 -0.35 5.26 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 281.16 15.07 4.24 4.24 Total: -1.00 -33.31 281.16 -6.60 -39.91 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.64 Total: 0.61 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.44 Total: 2.41 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.17 Total: -50.59 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.31 -6.60 -39.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.484 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds