Wall clock time and date at job start Sun Mar 29 2020 21:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 N 1.46507 * 109.47476 * 89.99510 * 6 5 4 8 8 C 1.34775 * 120.00290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99547 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.50698 * 109.47285 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00199 * 359.97438 * 11 10 8 13 13 C 1.37882 * 120.00185 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47337 * 59.99786 * 15 13 11 17 17 H 1.48509 * 109.46912 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47377 * 299.99448 * 15 13 11 19 19 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 20 20 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 21 21 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 22 22 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 23 23 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 24 24 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.46989 * 209.99307 * 6 5 4 26 26 H 1.08997 * 109.47678 * 329.99289 * 6 5 4 27 27 H 0.97002 * 119.99674 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47489 * 300.00507 * 10 8 7 29 29 H 1.08998 * 109.46973 * 60.00382 * 10 8 7 30 30 H 0.97001 * 119.99838 * 179.97438 * 14 13 11 31 31 H 1.08007 * 120.44813 * 180.29354 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 7 6.1817 -0.0029 1.3684 8 6 7.5077 -0.0039 1.6095 9 8 8.2922 -0.0019 0.6844 10 6 8.0157 -0.0064 3.0282 11 6 9.5227 -0.0064 3.0223 12 1 10.0590 -0.0053 2.0849 13 6 10.2168 -0.0091 4.2136 14 7 9.5637 -0.0110 5.3551 15 14 12.0848 -0.0099 4.2062 16 1 12.5775 1.2037 3.5065 17 1 12.5853 -0.0134 5.6043 18 1 12.5765 -1.2212 3.5019 19 6 3.4712 -1.1904 0.0013 20 7 2.1484 -1.1514 0.0005 21 1 -0.3632 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.9907 2.1374 0.0001 25 1 6.0492 -0.8888 -0.5280 26 1 6.0492 0.8911 -0.5242 27 1 5.5543 -0.0049 2.1082 28 1 7.6548 0.8829 3.5450 29 1 7.6540 -0.8970 3.5420 30 1 10.0520 -0.0132 6.1933 31 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:49 Heat of formation + Delta-G solvation = -25.128456 kcal Electronic energy + Delta-G solvation = -15384.413906 eV Core-core repulsion = 12664.611521 eV Total energy + Delta-G solvation = -2719.802385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.18764 -40.36860 -36.51208 -35.08504 -34.78395 -33.86824 -31.34702 -29.99914 -26.75892 -25.72491 -25.11524 -22.94550 -21.42458 -18.83648 -18.53647 -18.06319 -17.54913 -16.94110 -16.38210 -16.14373 -16.07684 -15.03368 -14.67751 -14.46916 -14.21722 -14.07327 -14.06798 -13.49360 -13.21371 -13.08955 -12.80544 -12.54345 -12.04314 -11.94582 -11.90806 -11.45993 -10.83506 -10.62073 -10.34093 -10.22965 -10.00635 -8.24623 -6.31946 -0.29125 0.01710 1.41707 1.44200 1.52810 1.88233 2.30194 2.46993 2.80349 2.97055 3.11121 3.12316 3.53325 3.60548 3.78240 4.23651 4.38296 4.52429 4.70508 4.71325 4.74184 4.97528 5.01948 5.09207 5.27044 5.40727 5.49068 5.73930 5.88279 6.05759 6.66456 6.83420 7.01041 7.34041 7.48932 8.87271 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060571 B = 0.004158 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.159482 B = 6731.706662 C = 6901.287550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.305 3.695 3 N -0.536 5.536 4 C 0.168 3.832 5 C -0.211 4.211 6 C 0.176 3.824 7 N -0.725 5.725 8 C 0.523 3.477 9 O -0.580 6.580 10 C 0.006 3.994 11 C -0.537 4.537 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.276 1.276 18 H -0.272 1.272 19 C 0.168 3.832 20 N -0.536 5.536 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.188 0.812 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.408 0.592 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 0.020 -9.365 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 N -0.251 5.251 4 C 0.002 3.998 5 C -0.216 4.216 6 C 0.052 3.948 7 N -0.378 5.378 8 C 0.312 3.688 9 O -0.459 6.459 10 C -0.033 4.033 11 C -0.576 4.576 12 H 0.076 0.924 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.197 1.197 19 C 0.002 3.998 20 N -0.251 5.251 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.204 0.796 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.243 0.757 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.470 0.022 -9.851 20.056 hybrid contribution 1.708 -0.004 0.564 1.798 sum -15.762 0.018 -9.287 18.295 Atomic orbital electron populations 1.20698 0.83497 1.05041 1.04979 1.24030 0.99833 0.83377 0.88911 1.68418 1.10254 1.30775 1.15613 1.23590 0.89350 0.99205 0.87628 1.21518 0.97233 0.96166 1.06678 1.19929 0.87271 1.03672 0.83960 1.46081 1.06479 1.76636 1.08617 1.21368 0.81596 0.73266 0.92544 1.90528 1.56955 1.51004 1.47426 1.19088 0.96647 0.98865 0.88735 1.21371 0.92027 1.51160 0.93005 0.92433 1.25798 1.03699 0.94517 0.94917 1.70027 1.37535 1.51203 0.97798 0.85514 0.79395 0.78968 0.77251 1.19674 1.20092 1.19688 1.23588 0.89353 0.99207 0.87634 1.68422 1.10250 1.30772 1.15614 0.88188 0.88758 0.88756 0.79561 0.90317 0.90311 0.75695 0.94020 0.94022 0.92428 0.79569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.32 71.24 0.74 -0.41 16 2 C 0.30 6.45 7.64 138.75 1.06 7.51 16 3 N -0.54 -12.00 10.33 -187.84 -1.94 -13.94 16 4 C 0.17 3.46 11.01 84.70 0.93 4.39 16 5 C -0.21 -4.39 5.28 -19.69 -0.10 -4.49 16 6 C 0.18 4.34 5.85 85.63 0.50 4.84 16 7 N -0.72 -22.38 5.55 -466.78 -2.59 -24.97 16 8 C 0.52 22.77 7.82 87.66 0.69 23.45 16 9 O -0.58 -29.24 15.46 -3.04 -0.05 -29.28 16 10 C 0.01 0.31 5.46 29.10 0.16 0.47 16 11 C -0.54 -31.25 8.92 25.60 0.23 -31.02 16 12 H 0.06 3.49 6.75 -2.91 -0.02 3.47 16 13 C 0.01 0.53 5.46 84.66 0.46 0.99 16 14 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16 15 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 C 0.17 3.46 11.01 84.70 0.93 4.39 16 20 N -0.54 -12.00 10.34 -187.84 -1.94 -13.95 16 21 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 25 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 26 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 27 H 0.41 10.96 8.46 -92.71 -0.78 10.18 16 28 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -70.47 281.16 1.75 -68.73 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.36 Total: 10.03 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.59 Total: 10.12 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -6.19 Total: -106.53 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.28 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.47 1.75 -68.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.597 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds