Wall clock time and date at job start Sun Mar 29 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 N 1.46496 * 109.47468 * 239.99247 * 2 1 3 5 5 C 1.34774 * 119.99544 * 85.00158 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47294 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 5 11 11 N 1.31518 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47454 * 59.99696 * 12 10 8 14 14 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46926 * 299.99488 * 12 10 8 16 16 C 1.50707 * 109.47004 * 119.99439 * 2 1 3 17 17 C 1.38384 * 120.00229 * 275.00482 * 16 2 1 18 18 N 1.32133 * 119.99903 * 179.97438 * 17 16 2 19 19 C 1.32152 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38342 * 120.00013 * 0.02562 * 19 18 17 21 21 N 1.32119 * 119.99783 * 94.72367 * 16 2 1 22 22 H 1.08997 * 109.47151 * 60.00842 * 1 2 3 23 23 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47248 * 300.00356 * 1 2 3 25 25 H 0.96994 * 120.00700 * 265.00278 * 4 2 1 26 26 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 27 27 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 28 28 H 0.96997 * 119.99752 * 180.02562 * 11 10 8 29 29 H 1.08005 * 120.00328 * 359.97438 * 17 16 2 30 30 H 1.07993 * 119.99712 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.99424 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8591 1.1584 -2.4115 7 6 2.6490 -0.7291 -3.5876 8 6 2.7004 0.2394 -4.7411 9 1 2.3994 1.2666 -4.5975 10 6 3.1308 -0.1862 -5.9798 11 7 3.4969 -1.4373 -6.1547 12 14 3.1939 1.0140 -7.4098 13 1 4.1110 2.1334 -7.0765 14 1 3.6886 0.3138 -8.6224 15 1 1.8328 1.5491 -7.6673 16 6 2.0323 -0.7103 1.2306 17 6 2.1643 -0.0199 2.4226 18 7 2.6043 -0.6429 3.5016 19 6 2.9177 -1.9254 3.4425 20 6 2.7856 -2.6155 2.2508 21 7 2.3413 -1.9936 1.1727 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.2490 -1.6318 -1.1524 26 1 3.6481 -1.1215 -3.3984 27 1 1.9762 -1.5510 -3.8324 28 1 3.8000 -1.7365 -7.0261 29 1 1.9078 1.0281 2.4710 30 1 3.2768 -2.4346 4.3245 31 1 3.0422 -3.6635 2.2025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:08 Heat of formation + Delta-G solvation = 3.309058 kcal Electronic energy + Delta-G solvation = -15791.620875 eV Core-core repulsion = 13073.051633 eV Total energy + Delta-G solvation = -2718.569242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32337 -38.74197 -35.59466 -34.02394 -32.88946 -31.81950 -29.90376 -28.39986 -25.18769 -24.77252 -23.60431 -21.44303 -19.60830 -17.63041 -17.30477 -16.66105 -16.30360 -15.29981 -15.13170 -14.99542 -14.39243 -14.13327 -13.73350 -13.17114 -12.84813 -12.56868 -12.06803 -11.98871 -11.76387 -11.35179 -11.31044 -11.07433 -10.77926 -10.56989 -9.93998 -9.46305 -9.32016 -9.25457 -8.63858 -8.48837 -8.37940 -6.02584 -4.02184 0.56710 0.94842 3.39311 3.41331 3.45874 3.48432 3.68958 3.77595 3.84371 4.09662 4.39930 4.52133 4.58276 5.01503 5.08710 5.26324 5.32770 5.35684 5.38082 5.68664 5.93210 6.12112 6.29252 6.42617 6.97345 7.13179 7.24051 7.37111 7.59465 7.98763 8.11185 8.48870 9.08206 9.24737 9.62598 11.09795 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.048812 B = 0.004970 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.493589 B = 5632.459799 C = 5934.845036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.194 3.806 3 H 0.104 0.896 4 N -0.737 5.737 5 C 0.516 3.484 6 O -0.548 6.548 7 C 0.006 3.994 8 C -0.508 4.508 9 H 0.075 0.925 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.085 3.915 17 C 0.057 3.943 18 N -0.436 5.436 19 C 0.037 3.963 20 C 0.057 3.943 21 N -0.432 5.432 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.406 0.594 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -2.949 17.883 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.122 0.878 4 N -0.393 5.393 5 C 0.307 3.693 6 O -0.424 6.424 7 C -0.033 4.033 8 C -0.546 4.546 9 H 0.093 0.907 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.730 3.270 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.201 1.201 16 C -0.056 4.056 17 C -0.104 4.104 18 N -0.150 5.150 19 C -0.122 4.122 20 C -0.102 4.102 21 N -0.147 5.147 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.241 0.759 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.188 0.812 30 H 0.186 0.814 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.835 -2.211 17.692 18.054 hybrid contribution 0.244 -0.102 -0.636 0.689 sum -2.591 -2.313 17.056 17.406 Atomic orbital electron populations 1.22163 0.93880 1.02533 1.02930 1.19609 0.94318 0.96289 0.81071 0.87803 1.46311 1.69546 1.14679 1.08729 1.22052 0.75304 0.87563 0.84404 1.90523 1.49996 1.16911 1.84976 1.19225 0.97865 0.97177 0.89038 1.21130 1.43449 0.97094 0.92964 0.90718 1.25009 0.95319 0.95369 0.98929 1.69958 1.44860 1.15351 1.23910 0.86485 0.78571 0.80903 0.81040 1.20160 1.21392 1.20128 1.22545 0.95165 0.91203 0.96694 1.23538 0.96427 1.01732 0.88690 1.68468 1.07285 1.09560 1.29665 1.23758 0.97823 0.91319 0.99325 1.23813 0.95497 1.01749 0.89186 1.68133 1.07625 1.08815 1.30158 0.90525 0.92286 0.92044 0.75858 0.93503 0.93386 0.92885 0.81159 0.81395 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.47 37.15 0.35 -1.71 16 2 C 0.19 2.86 2.84 -69.08 -0.20 2.66 16 3 H 0.10 1.58 7.55 -51.93 -0.39 1.19 16 4 N -0.74 -13.16 5.05 -54.93 -0.28 -13.43 16 5 C 0.52 11.79 7.79 -10.98 -0.09 11.70 16 6 O -0.55 -13.97 15.12 5.56 0.08 -13.89 16 7 C 0.01 0.16 5.46 -29.03 -0.16 0.00 16 8 C -0.51 -14.84 8.92 -34.44 -0.31 -15.15 16 9 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 10 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 12 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.08 1.09 5.89 -82.41 -0.49 0.61 16 17 C 0.06 0.64 10.90 -17.37 -0.19 0.45 16 18 N -0.44 -4.92 10.50 -13.06 -0.14 -5.06 16 19 C 0.04 0.34 11.22 -17.38 -0.20 0.14 16 20 C 0.06 0.55 11.22 -17.37 -0.19 0.36 16 21 N -0.43 -5.52 9.22 -9.29 -0.09 -5.60 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.41 6.81 7.65 -40.82 -0.31 6.49 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 278.36 15.07 4.19 4.19 Total: -1.00 -33.75 278.36 -5.64 -39.39 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.58 Total: 2.54 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.56 Total: 0.54 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.24 Total: -50.03 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.75 -5.64 -39.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.700 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds