Wall clock time and date at job start Sun Mar 29 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 N 1.46496 * 109.47468 * 239.99247 * 2 1 3 5 5 C 1.34774 * 119.99544 * 85.00158 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47294 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 5 11 11 N 1.31518 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47454 * 59.99696 * 12 10 8 14 14 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46926 * 299.99488 * 12 10 8 16 16 C 1.50707 * 109.47004 * 119.99439 * 2 1 3 17 17 C 1.38384 * 120.00229 * 275.00482 * 16 2 1 18 18 N 1.32133 * 119.99903 * 179.97438 * 17 16 2 19 19 C 1.32152 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38342 * 120.00013 * 0.02562 * 19 18 17 21 21 N 1.32119 * 119.99783 * 94.72367 * 16 2 1 22 22 H 1.08997 * 109.47151 * 60.00842 * 1 2 3 23 23 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47248 * 300.00356 * 1 2 3 25 25 H 0.96994 * 120.00700 * 265.00278 * 4 2 1 26 26 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 27 27 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 28 28 H 0.96997 * 119.99752 * 180.02562 * 11 10 8 29 29 H 1.08005 * 120.00328 * 359.97438 * 17 16 2 30 30 H 1.07993 * 119.99712 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.99424 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8591 1.1584 -2.4115 7 6 2.6490 -0.7291 -3.5876 8 6 2.7004 0.2394 -4.7411 9 1 2.3994 1.2666 -4.5975 10 6 3.1308 -0.1862 -5.9798 11 7 3.4969 -1.4373 -6.1547 12 14 3.1939 1.0140 -7.4098 13 1 4.1110 2.1334 -7.0765 14 1 3.6886 0.3138 -8.6224 15 1 1.8328 1.5491 -7.6673 16 6 2.0323 -0.7103 1.2306 17 6 2.1643 -0.0199 2.4226 18 7 2.6043 -0.6429 3.5016 19 6 2.9177 -1.9254 3.4425 20 6 2.7856 -2.6155 2.2508 21 7 2.3413 -1.9936 1.1727 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.2490 -1.6318 -1.1524 26 1 3.6481 -1.1215 -3.3984 27 1 1.9762 -1.5510 -3.8324 28 1 3.8000 -1.7365 -7.0261 29 1 1.9078 1.0281 2.4710 30 1 3.2768 -2.4346 4.3245 31 1 3.0422 -3.6635 2.2025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:07 Heat of formation + Delta-G solvation = -21.756637 kcal Electronic energy + Delta-G solvation = -15792.707805 eV Core-core repulsion = 13073.051633 eV Total energy + Delta-G solvation = -2719.656172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18874 -40.43161 -36.91510 -35.09738 -34.93373 -33.11767 -31.27350 -30.14485 -26.30178 -25.81498 -25.26686 -22.69950 -21.23162 -18.70260 -18.41280 -18.36478 -17.69046 -16.78053 -16.59645 -16.21483 -15.92228 -15.72140 -14.78769 -14.62027 -14.17719 -14.11678 -13.75967 -13.15033 -13.13729 -12.76794 -12.62941 -12.56603 -12.35526 -12.19699 -12.01747 -11.46136 -10.62055 -10.58706 -10.36176 -10.14938 -9.88142 -8.24023 -6.31798 -0.23399 0.12316 1.41141 1.44351 1.52853 1.87906 2.27847 2.48122 2.70876 2.91297 3.11232 3.35390 3.58102 3.71077 4.15410 4.17160 4.31575 4.39295 4.44449 4.58078 4.71075 4.87682 5.08709 5.16302 5.25758 5.40580 5.55121 5.74549 6.05803 6.28125 6.69952 6.77936 6.85014 7.34107 7.50458 8.88138 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.048812 B = 0.004970 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.493589 B = 5632.459799 C = 5934.845036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.193 3.807 3 H 0.096 0.904 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.579 6.579 7 C 0.008 3.992 8 C -0.536 4.536 9 H 0.058 0.942 10 C 0.009 3.991 11 N -0.926 5.926 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.275 1.275 15 H -0.271 1.271 16 C 0.066 3.934 17 C 0.056 3.944 18 N -0.454 5.454 19 C 0.050 3.950 20 C 0.056 3.944 21 N -0.460 5.460 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.412 0.588 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.189 0.811 30 H 0.208 0.792 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -3.368 19.252 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.087 3.913 3 H 0.114 0.886 4 N -0.373 5.373 5 C 0.311 3.689 6 O -0.459 6.459 7 C -0.031 4.031 8 C -0.575 4.575 9 H 0.076 0.924 10 C -0.190 4.190 11 N -0.566 5.566 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.200 1.200 15 H -0.196 1.196 16 C -0.073 4.073 17 C -0.103 4.103 18 N -0.168 5.168 19 C -0.110 4.110 20 C -0.104 4.104 21 N -0.176 5.176 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.249 0.751 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.206 0.794 30 H 0.224 0.776 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.694 -2.643 19.094 19.463 hybrid contribution 0.234 -0.101 -0.922 0.957 sum -2.460 -2.743 18.172 18.542 Atomic orbital electron populations 1.22084 0.92699 1.02689 1.03242 1.19736 0.95286 0.95857 0.80459 0.88588 1.46033 1.67957 1.14778 1.08508 1.21397 0.75441 0.86948 0.85099 1.90499 1.51717 1.17988 1.85653 1.19060 0.97297 0.96586 0.90175 1.21351 1.44371 0.97015 0.94718 0.92373 1.25825 0.94553 0.97188 1.01420 1.70041 1.44942 1.16774 1.24823 0.85481 0.78768 0.78744 0.77912 1.19709 1.19959 1.19617 1.22161 0.97314 0.91671 0.96191 1.23734 0.95981 1.02514 0.88103 1.68564 1.07994 1.10752 1.29495 1.24429 0.95604 0.90593 1.00418 1.24402 0.94394 1.03131 0.88485 1.68045 1.08519 1.08982 1.32027 0.92967 0.92147 0.88905 0.75135 0.94461 0.94201 0.92415 0.79440 0.77566 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.47 71.98 0.68 -3.16 16 2 C 0.19 5.62 2.84 44.25 0.13 5.75 16 3 H 0.10 2.95 7.55 -2.39 -0.02 2.94 16 4 N -0.72 -25.98 5.05 -446.10 -2.25 -28.23 16 5 C 0.52 24.49 7.79 87.66 0.68 25.17 16 6 O -0.58 -30.41 15.12 -3.02 -0.05 -30.45 16 7 C 0.01 0.44 5.46 29.10 0.16 0.60 16 8 C -0.54 -32.10 8.92 25.60 0.23 -31.88 16 9 H 0.06 3.62 6.75 -2.91 -0.02 3.60 16 10 C 0.01 0.50 5.46 84.65 0.46 0.96 16 11 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 12 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.07 1.63 5.89 42.55 0.25 1.88 16 17 C 0.06 1.16 10.90 84.68 0.92 2.08 16 18 N -0.45 -9.10 10.50 -195.23 -2.05 -11.15 16 19 C 0.05 0.73 11.22 84.67 0.95 1.68 16 20 C 0.06 0.92 11.22 84.67 0.95 1.87 16 21 N -0.46 -11.03 9.22 -183.29 -1.69 -12.72 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.41 13.90 7.65 -92.71 -0.71 13.19 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -73.21 278.36 2.12 -71.09 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.44 Total: 13.56 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.41 Total: 4.97 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -5.71 Total: -106.94 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.21 2.12 -71.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.331 kcal (2) G-P(sol) polarization free energy of solvation -73.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds