Wall clock time and date at job start Sun Mar 29 2020 21:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32259 * 120.42206 * 2 1 4 4 C 1.31882 * 121.05914 * 179.97438 * 3 2 1 5 5 N 1.31571 * 121.92797 * 0.02562 * 4 3 2 6 6 C 1.33169 * 120.71411 * 0.02562 * 5 4 3 7 7 C 1.48246 * 120.55735 * 180.02562 * 6 5 4 8 8 O 1.21533 * 119.99987 * 104.80839 * 7 6 5 9 9 N 1.34780 * 119.99512 * 284.80127 * 7 6 5 10 10 C 1.46495 * 120.00415 * 5.11450 * 9 7 6 11 11 C 1.36688 * 119.99450 * 185.10975 * 9 7 6 12 12 H 1.08001 * 120.00035 * 25.28599 * 11 9 7 13 13 C 1.39183 * 119.99799 * 205.28623 * 11 9 7 14 14 N 1.31272 * 119.99971 * 10.61644 * 13 11 9 15 15 Si 1.86796 * 119.99855 * 190.62045 * 13 11 9 16 16 H 1.48501 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46937 * 119.99918 * 15 13 11 18 18 H 1.48497 * 109.46926 * 239.99722 * 15 13 11 19 19 C 1.38677 * 120.41768 * 179.97438 * 2 1 3 20 20 C 1.50700 * 120.87094 * 359.97438 * 19 2 1 21 21 H 1.09005 * 109.47067 * 89.99714 * 1 2 3 22 22 H 1.08994 * 109.47060 * 209.99689 * 1 2 3 23 23 H 1.09006 * 109.46948 * 330.00290 * 1 2 3 24 24 H 1.08010 * 119.03445 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47530 * 85.70956 * 10 9 7 26 26 H 1.08995 * 109.47338 * 205.71153 * 10 9 7 27 27 H 1.09001 * 109.47070 * 325.70992 * 10 9 7 28 28 H 0.97001 * 119.99954 * 180.02562 * 14 13 11 29 29 H 1.08997 * 109.46976 * 275.15616 * 20 19 2 30 30 H 1.08994 * 109.46937 * 35.16211 * 20 19 2 31 31 H 1.09004 * 109.46677 * 155.16015 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1767 1.1405 0.0000 4 6 3.4954 1.1552 0.0005 5 7 4.2036 0.0463 0.0005 6 6 3.6048 -1.1432 -0.0005 7 6 4.4062 -2.3904 0.0001 8 8 4.5072 -3.0473 1.0176 9 7 5.0226 -2.7958 -1.1278 10 6 4.9945 -1.9489 -2.3229 11 6 5.6741 -3.9971 -1.1566 12 1 5.3811 -4.7865 -0.4803 13 6 6.7149 -4.2028 -2.0574 14 7 7.2101 -3.1905 -2.7307 15 14 7.4072 -5.9196 -2.3084 16 1 6.6807 -6.8784 -1.4376 17 1 7.2403 -6.3177 -3.7293 18 1 8.8502 -5.9274 -1.9583 19 6 2.2091 -1.1959 0.0005 20 6 1.4851 -2.5176 0.0017 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 4.0091 2.1053 0.0009 25 1 5.8089 -1.2260 -2.2752 26 1 5.1114 -2.5698 -3.2110 27 1 4.0423 -1.4208 -2.3716 28 1 7.9352 -3.3340 -3.3587 29 1 1.2300 -2.7912 1.0255 30 1 0.5736 -2.4330 -0.5898 31 1 2.1284 -3.2845 -0.4298 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147066782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:01 Heat of formation + Delta-G solvation = 16.538502 kcal Electronic energy + Delta-G solvation = -16593.495125 eV Core-core repulsion = 13875.499555 eV Total energy + Delta-G solvation = -2717.995570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89465 -38.24168 -34.83909 -34.46197 -33.31077 -31.61700 -28.96794 -27.49345 -26.37135 -25.05765 -23.15416 -22.27405 -19.60817 -17.65522 -16.99446 -16.58996 -15.52939 -14.89292 -14.53199 -14.16679 -14.08870 -13.75477 -13.06114 -12.91247 -12.75970 -12.68116 -12.42463 -11.98328 -11.67833 -11.47186 -11.33271 -10.95187 -10.55504 -10.48639 -10.37645 -10.07769 -9.29248 -9.11600 -8.91040 -8.45985 -7.79640 -6.42288 -3.99799 1.15068 1.27232 3.08367 3.20943 3.27487 3.54179 3.95935 4.03906 4.23208 4.36537 4.68975 5.00106 5.02098 5.08873 5.26529 5.49374 5.54824 5.60106 5.77642 5.81651 5.92860 6.11952 6.27776 6.32289 6.68302 6.79884 7.17697 7.27312 7.46202 7.98625 8.34878 8.38084 9.02406 9.25106 9.80132 10.61921 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041453 B = 0.007224 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.301384 B = 3875.097815 C = 4141.506788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.165 3.835 3 N -0.526 5.526 4 C 0.284 3.716 5 N -0.495 5.495 6 C 0.181 3.819 7 C 0.491 3.509 8 O -0.572 6.572 9 N -0.418 5.418 10 C 0.116 3.884 11 C -0.312 4.312 12 H 0.102 0.898 13 C 0.035 3.965 14 N -0.871 5.871 15 Si 0.931 3.069 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.165 4.165 20 C -0.105 4.105 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.195 0.805 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.015 0.985 28 H 0.270 0.730 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 4.724 -0.314 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.018 3.982 3 N -0.241 5.241 4 C -0.004 4.004 5 N -0.210 5.210 6 C 0.033 3.967 7 C 0.276 3.724 8 O -0.456 6.456 9 N -0.134 5.134 10 C -0.027 4.027 11 C -0.440 4.440 12 H 0.120 0.880 13 C -0.170 4.170 14 N -0.509 5.509 15 Si 0.757 3.243 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.170 4.170 20 C -0.162 4.162 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.212 0.788 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.853 5.267 0.001 11.172 hybrid contribution 0.231 -1.172 -0.289 1.229 sum -9.622 4.095 -0.288 10.461 Atomic orbital electron populations 1.20749 0.88034 1.03812 1.03424 1.21516 0.97294 0.87605 0.91741 1.68124 1.10684 1.30153 1.15119 1.24870 0.86505 0.96967 0.92094 1.68571 1.41440 0.98195 1.12824 1.22078 0.91196 0.93779 0.89695 1.17405 0.86045 0.84309 0.84634 1.90648 1.66535 1.56448 1.31972 1.43366 1.43963 1.17819 1.08295 1.21483 0.97151 0.94758 0.89348 1.19710 1.13760 0.89593 1.20958 0.87998 1.25468 0.95386 0.99424 0.96741 1.69952 1.24958 1.30184 1.25840 0.85795 0.78834 0.81540 0.78156 1.19005 1.20506 1.20497 1.21550 0.94664 0.97981 1.02822 1.20681 0.99832 0.92840 1.02878 0.89871 0.90092 0.90143 0.78829 0.92164 0.90370 0.96602 0.91922 0.90370 0.91037 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.49 36.00 0.34 -0.75 16 2 C 0.17 2.56 6.83 -82.25 -0.56 2.00 16 3 N -0.53 -8.57 10.36 -10.82 -0.11 -8.68 16 4 C 0.28 4.80 12.27 -92.27 -1.13 3.66 16 5 N -0.49 -10.30 10.34 -11.15 -0.12 -10.42 16 6 C 0.18 3.96 4.72 -82.64 -0.39 3.57 16 7 C 0.49 12.69 5.82 -12.14 -0.07 12.62 16 8 O -0.57 -16.48 16.86 5.34 0.09 -16.39 16 9 N -0.42 -11.05 3.00 -123.15 -0.37 -11.42 16 10 C 0.12 2.76 8.47 59.84 0.51 3.27 16 11 C -0.31 -8.67 9.19 -15.04 -0.14 -8.81 16 12 H 0.10 2.90 7.50 -52.49 -0.39 2.51 16 13 C 0.03 0.91 5.08 -17.44 -0.09 0.82 16 14 N -0.87 -23.27 10.76 55.51 0.60 -22.67 16 15 Si 0.93 20.34 29.57 -169.99 -5.03 15.32 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.17 -2.97 5.95 -103.92 -0.62 -3.58 16 20 C -0.10 -1.60 8.85 36.01 0.32 -1.29 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.73 6.91 -51.93 -0.36 0.37 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.20 2.50 8.06 -52.48 -0.42 2.07 16 25 H 0.06 1.51 7.82 -51.93 -0.41 1.10 16 26 H 0.08 1.89 6.79 -51.93 -0.35 1.53 16 27 H 0.02 0.33 6.95 -51.93 -0.36 -0.03 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 31 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -32.28 269.79 -6.13 -38.41 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.43 Total: 0.26 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.83 Total: 11.52 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.00 Total: -53.19 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.09 Total: -16.39 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.28 -6.13 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147066782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.953 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds