Wall clock time and date at job start Sun Mar 29 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36912 * 119.99966 * 2 1 4 4 H 1.07998 * 120.00125 * 214.91879 * 3 2 1 5 5 C 1.39015 * 119.99775 * 34.92128 * 3 2 1 6 6 N 1.31378 * 120.00311 * 5.20619 * 5 3 2 7 7 Si 1.86802 * 119.99957 * 185.20297 * 5 3 2 8 8 H 1.48503 * 109.46860 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47244 * 119.99789 * 7 5 3 10 10 H 1.48494 * 109.47295 * 240.00055 * 7 5 3 11 11 C 1.34780 * 119.99982 * 179.97438 * 2 1 3 12 12 O 1.21601 * 120.00062 * 5.44919 * 11 2 1 13 13 C 1.47605 * 119.99756 * 185.45280 * 11 2 1 14 14 C 1.41450 * 126.51507 * 175.10113 * 13 11 2 15 15 C 1.35429 * 105.43447 * 180.18629 * 14 13 11 16 16 N 1.34882 * 107.69138 * 359.75230 * 15 14 13 17 17 N 1.29368 * 109.59651 * 0.18809 * 16 15 14 18 18 C 1.47460 * 110.69407 * 179.90625 * 16 15 14 19 19 C 1.54330 * 105.62572 * 17.59717 * 18 16 15 20 20 C 1.51346 * 141.95114 * 180.95569 * 15 14 13 21 21 H 1.08999 * 109.47364 * 264.99872 * 1 2 3 22 22 H 1.08996 * 109.47614 * 25.00231 * 1 2 3 23 23 H 1.09007 * 109.47216 * 145.00436 * 1 2 3 24 24 H 0.97000 * 120.00315 * 179.97438 * 6 5 3 25 25 H 1.07995 * 127.28605 * 359.92768 * 14 13 11 26 26 H 1.09002 * 110.22006 * 136.63277 * 18 16 15 27 27 H 1.08998 * 110.21603 * 258.47412 * 18 16 15 28 28 H 1.09001 * 110.96417 * 92.21115 * 19 18 16 29 29 H 1.09000 * 110.96657 * 215.97263 * 19 18 16 30 30 H 1.08997 * 110.65657 * 43.93800 * 20 15 14 31 31 H 1.09010 * 110.38565 * 281.37405 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.0836 1.2699 -0.5354 5 6 1.6421 2.2812 0.6892 6 7 0.5606 2.1518 1.4238 7 14 2.4981 3.9373 0.5708 8 1 3.6850 3.8189 -0.3137 9 1 1.5594 4.9405 0.0072 10 1 2.9300 4.3692 1.9244 11 6 2.1388 -1.1672 0.0005 12 8 1.5350 -2.2180 -0.0990 13 6 3.6099 -1.1700 0.1220 14 6 4.4430 -2.3076 0.2346 15 6 5.7044 -1.8231 0.3243 16 7 5.6320 -0.4776 0.2632 17 7 4.3959 -0.1145 0.1453 18 6 6.9761 0.1214 0.3576 19 6 7.9637 -1.0211 0.0398 20 6 7.1459 -2.2675 0.4476 21 1 -0.3634 -0.0896 1.0237 22 1 -0.3634 0.9313 -0.4343 23 1 -0.3634 -0.8419 -0.5894 24 1 0.2068 2.9161 1.9050 25 1 4.1374 -3.3433 0.2504 26 1 7.0826 0.9249 -0.3712 27 1 7.1492 0.5015 1.3644 28 1 8.2051 -1.0437 -1.0229 29 1 8.8680 -0.9339 0.6421 30 1 7.3517 -3.0971 -0.2287 31 1 7.3692 -2.5506 1.4764 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151932311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:29 Heat of formation + Delta-G solvation = 68.232899 kcal Electronic energy + Delta-G solvation = -16630.194527 eV Core-core repulsion = 13914.440594 eV Total energy + Delta-G solvation = -2715.753933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10681 -38.12619 -35.91043 -34.61367 -31.34994 -31.11872 -29.00123 -26.86836 -26.19243 -24.63600 -22.16370 -21.07809 -19.99320 -18.69841 -17.02461 -16.42435 -15.76542 -15.25105 -14.43134 -14.26226 -14.07048 -13.67139 -13.33213 -13.08616 -12.75426 -12.39694 -11.89148 -11.60814 -11.56247 -11.22251 -11.17138 -11.01618 -10.85244 -10.54682 -10.26132 -9.49667 -8.94664 -8.57691 -8.28100 -8.24941 -7.46101 -6.26496 -3.88421 2.52662 2.85970 2.95302 3.21599 3.25286 3.31614 4.15163 4.20819 4.56733 4.63315 4.70494 4.82172 5.13349 5.26218 5.33765 5.43391 5.50911 5.68431 5.78173 5.86675 6.22633 6.46175 6.56792 6.84343 7.04477 7.21484 7.34283 7.38766 7.68469 7.98340 8.61180 8.87704 9.21390 9.62780 10.01729 10.78279 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.009858 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.990911 B = 2839.553079 C = 3879.302560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.426 5.426 3 C -0.311 4.311 4 H 0.115 0.885 5 C 0.037 3.963 6 N -0.874 5.874 7 Si 0.924 3.076 8 H -0.267 1.267 9 H -0.282 1.282 10 H -0.283 1.283 11 C 0.532 3.468 12 O -0.607 6.607 13 C 0.030 3.970 14 C -0.178 4.178 15 C -0.033 4.033 16 N -0.330 5.330 17 N -0.215 5.215 18 C 0.125 3.875 19 C -0.131 4.131 20 C -0.054 4.054 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.267 0.733 25 H 0.150 0.850 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 -2.507 -1.349 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.142 5.142 3 C -0.441 4.441 4 H 0.132 0.868 5 C -0.168 4.168 6 N -0.512 5.512 7 Si 0.751 3.249 8 H -0.191 1.191 9 H -0.208 1.208 10 H -0.209 1.209 11 C 0.320 3.680 12 O -0.493 6.493 13 C -0.131 4.131 14 C -0.207 4.207 15 C -0.157 4.157 16 N -0.118 5.118 17 N -0.046 5.046 18 C 0.004 3.996 19 C -0.169 4.169 20 C -0.093 4.093 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.167 0.833 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.571 -1.467 -1.341 13.716 hybrid contribution 0.343 0.257 0.265 0.504 sum 13.914 -1.210 -1.075 14.008 Atomic orbital electron populations 1.21301 0.80523 0.99482 1.00821 1.43442 1.05633 1.04776 1.60369 1.20156 1.06983 0.86740 1.30203 0.86771 1.25519 0.96334 1.00360 0.94619 1.69962 1.21572 1.31298 1.28372 0.85908 0.79431 0.81568 0.78041 1.19144 1.20802 1.20857 1.17018 0.83686 0.84020 0.83293 1.90604 1.68413 1.31774 1.58480 1.22105 0.95064 0.88674 1.07282 1.20861 0.89279 0.99813 1.10747 1.22225 0.96372 0.87138 1.09932 1.47231 1.05378 1.06501 1.52711 1.74400 0.86535 1.25615 1.18081 1.22370 0.76247 0.97239 1.03695 1.22738 0.97611 0.93319 1.03235 1.20646 0.87826 0.97972 1.02821 0.92898 0.91681 0.94567 0.92283 0.83264 0.88920 0.89252 0.89685 0.88460 0.89436 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.19 8.70 59.84 0.52 3.71 16 2 N -0.43 -11.97 2.97 -123.37 -0.37 -12.34 16 3 C -0.31 -8.66 8.11 -14.99 -0.12 -8.78 16 4 H 0.12 3.17 5.74 -52.49 -0.30 2.87 16 5 C 0.04 0.99 5.18 -17.46 -0.09 0.90 16 6 N -0.87 -24.36 11.15 55.50 0.62 -23.74 16 7 Si 0.92 20.96 29.56 -169.99 -5.02 15.93 16 8 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.53 14.83 7.63 -12.44 -0.09 14.73 16 12 O -0.61 -17.64 16.56 5.28 0.09 -17.55 16 13 C 0.03 0.74 6.86 -82.91 -0.57 0.18 16 14 C -0.18 -3.73 10.81 -39.36 -0.43 -4.15 16 15 C -0.03 -0.56 7.47 -81.94 -0.61 -1.18 16 16 N -0.33 -6.16 4.40 -55.54 -0.24 -6.41 16 17 N -0.21 -5.08 8.97 33.36 0.30 -4.78 16 18 C 0.12 1.52 7.78 -2.82 -0.02 1.50 16 19 C -0.13 -1.10 7.17 -25.22 -0.18 -1.28 16 20 C -0.05 -0.58 6.85 -26.75 -0.18 -0.77 16 21 H 0.05 1.42 7.73 -51.93 -0.40 1.02 16 22 H 0.06 1.67 7.29 -51.93 -0.38 1.29 16 23 H 0.04 0.89 7.51 -51.93 -0.39 0.50 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -34.41 264.98 -5.98 -40.39 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.57 Total: -0.35 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.78 Total: 4.86 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.31 Total: -47.27 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.09 Total: -17.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.41 -5.98 -40.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151932311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.620 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds