Wall clock time and date at job start Sun Mar 29 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36912 * 119.99966 * 2 1 4 4 H 1.07998 * 120.00125 * 214.91879 * 3 2 1 5 5 C 1.39015 * 119.99775 * 34.92128 * 3 2 1 6 6 N 1.31378 * 120.00311 * 5.20619 * 5 3 2 7 7 Si 1.86802 * 119.99957 * 185.20297 * 5 3 2 8 8 H 1.48503 * 109.46860 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47244 * 119.99789 * 7 5 3 10 10 H 1.48494 * 109.47295 * 240.00055 * 7 5 3 11 11 C 1.34780 * 119.99982 * 179.97438 * 2 1 3 12 12 O 1.21601 * 120.00062 * 5.44919 * 11 2 1 13 13 C 1.47605 * 119.99756 * 185.45280 * 11 2 1 14 14 C 1.41450 * 126.51507 * 175.10113 * 13 11 2 15 15 C 1.35429 * 105.43447 * 180.18629 * 14 13 11 16 16 N 1.34882 * 107.69138 * 359.75230 * 15 14 13 17 17 N 1.29368 * 109.59651 * 0.18809 * 16 15 14 18 18 C 1.47460 * 110.69407 * 179.90625 * 16 15 14 19 19 C 1.54330 * 105.62572 * 17.59717 * 18 16 15 20 20 C 1.51346 * 141.95114 * 180.95569 * 15 14 13 21 21 H 1.08999 * 109.47364 * 264.99872 * 1 2 3 22 22 H 1.08996 * 109.47614 * 25.00231 * 1 2 3 23 23 H 1.09007 * 109.47216 * 145.00436 * 1 2 3 24 24 H 0.97000 * 120.00315 * 179.97438 * 6 5 3 25 25 H 1.07995 * 127.28605 * 359.92768 * 14 13 11 26 26 H 1.09002 * 110.22006 * 136.63277 * 18 16 15 27 27 H 1.08998 * 110.21603 * 258.47412 * 18 16 15 28 28 H 1.09001 * 110.96417 * 92.21115 * 19 18 16 29 29 H 1.09000 * 110.96657 * 215.97263 * 19 18 16 30 30 H 1.08997 * 110.65657 * 43.93800 * 20 15 14 31 31 H 1.09010 * 110.38565 * 281.37405 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.0836 1.2699 -0.5354 5 6 1.6421 2.2812 0.6892 6 7 0.5606 2.1518 1.4238 7 14 2.4981 3.9373 0.5708 8 1 3.6850 3.8189 -0.3137 9 1 1.5594 4.9405 0.0072 10 1 2.9300 4.3692 1.9244 11 6 2.1388 -1.1672 0.0005 12 8 1.5350 -2.2180 -0.0990 13 6 3.6099 -1.1700 0.1220 14 6 4.4430 -2.3076 0.2346 15 6 5.7044 -1.8231 0.3243 16 7 5.6320 -0.4776 0.2632 17 7 4.3959 -0.1145 0.1453 18 6 6.9761 0.1214 0.3576 19 6 7.9637 -1.0211 0.0398 20 6 7.1459 -2.2675 0.4476 21 1 -0.3634 -0.0896 1.0237 22 1 -0.3634 0.9313 -0.4343 23 1 -0.3634 -0.8419 -0.5894 24 1 0.2068 2.9161 1.9050 25 1 4.1374 -3.3433 0.2504 26 1 7.0826 0.9249 -0.3712 27 1 7.1492 0.5015 1.3644 28 1 8.2051 -1.0437 -1.0229 29 1 8.8680 -0.9339 0.6421 30 1 7.3517 -3.0971 -0.2287 31 1 7.3692 -2.5506 1.4764 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151932311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:28 Heat of formation + Delta-G solvation = 44.131655 kcal Electronic energy + Delta-G solvation = -16631.239635 eV Core-core repulsion = 13914.440594 eV Total energy + Delta-G solvation = -2716.799041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.59455 -40.18590 -37.08636 -36.75173 -33.46081 -32.50711 -30.47055 -28.31318 -27.94194 -26.63771 -23.68647 -22.27056 -21.56605 -20.62041 -18.86403 -17.70243 -17.43624 -16.90344 -16.31253 -16.14879 -15.89530 -15.08022 -14.75013 -14.50343 -14.00237 -13.79618 -13.66125 -13.23320 -13.16614 -12.95187 -12.80983 -12.56811 -12.38610 -12.06381 -11.87206 -11.29814 -10.99051 -10.67867 -9.90079 -9.73823 -9.56693 -8.32567 -6.03040 0.83383 1.26954 1.39725 1.43964 1.55380 1.68974 2.28332 2.59481 2.93164 3.17227 3.28368 3.67264 3.94702 4.01001 4.18474 4.49736 4.52997 4.64067 4.74942 4.82119 4.89253 4.91801 5.07086 5.08708 5.19936 5.21685 5.47943 5.66709 5.86488 5.95928 6.51140 7.04742 7.28767 7.55406 7.89922 8.73591 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.009858 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.990911 B = 2839.553079 C = 3879.302560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.442 5.442 3 C -0.329 4.329 4 H 0.112 0.888 5 C -0.008 4.008 6 N -0.905 5.905 7 Si 0.994 3.006 8 H -0.260 1.260 9 H -0.272 1.272 10 H -0.279 1.279 11 C 0.518 3.482 12 O -0.634 6.634 13 C -0.013 4.013 14 C -0.211 4.211 15 C -0.008 4.008 16 N -0.327 5.327 17 N -0.248 5.248 18 C 0.103 3.897 19 C -0.110 4.110 20 C -0.052 4.052 21 H 0.037 0.963 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.272 0.728 25 H 0.152 0.848 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.856 -1.826 -1.259 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.158 5.158 3 C -0.458 4.458 4 H 0.130 0.870 5 C -0.209 4.209 6 N -0.543 5.543 7 Si 0.817 3.183 8 H -0.184 1.184 9 H -0.197 1.197 10 H -0.204 1.204 11 C 0.308 3.692 12 O -0.523 6.523 13 C -0.172 4.172 14 C -0.240 4.240 15 C -0.134 4.134 16 N -0.117 5.117 17 N -0.082 5.082 18 C -0.015 4.015 19 C -0.148 4.148 20 C -0.091 4.091 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.170 0.830 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.130 0.870 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.428 -0.775 -1.257 17.490 hybrid contribution -0.726 -0.003 0.258 0.770 sum 16.702 -0.778 -1.000 16.750 Atomic orbital electron populations 1.21156 0.80411 0.99575 0.99892 1.43704 1.06126 1.05290 1.60666 1.20325 1.07339 0.86977 1.31153 0.87039 1.26425 0.96879 1.03805 0.93808 1.70071 1.22728 1.32570 1.28945 0.84857 0.78574 0.76689 0.78144 1.18398 1.19694 1.20435 1.17585 0.85494 0.83581 0.82580 1.90538 1.69634 1.32479 1.59622 1.21833 0.93973 0.90879 1.10541 1.21009 0.90645 0.99261 1.13085 1.23070 0.98161 0.86562 1.05577 1.47863 1.05569 1.08012 1.50218 1.74143 0.88813 1.25943 1.19285 1.23103 0.73721 0.99343 1.05324 1.22855 0.97420 0.89536 1.05015 1.20989 0.83132 0.99834 1.05110 0.94397 0.91782 0.93922 0.91875 0.82996 0.87936 0.87467 0.88422 0.83961 0.87036 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.28 8.70 127.77 1.11 8.39 16 2 N -0.44 -25.95 2.97 -662.47 -1.97 -27.91 16 3 C -0.33 -18.82 8.11 84.09 0.68 -18.14 16 4 H 0.11 6.35 5.74 -2.91 -0.02 6.34 16 5 C -0.01 -0.41 5.18 84.95 0.44 0.03 16 6 N -0.90 -51.40 11.15 21.67 0.24 -51.16 16 7 Si 0.99 42.90 29.56 68.60 2.03 44.93 16 8 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 C 0.52 30.35 7.63 86.72 0.66 31.02 16 12 O -0.63 -38.83 16.56 -4.03 -0.07 -38.89 16 13 C -0.01 -0.68 6.86 42.44 0.29 -0.39 16 14 C -0.21 -8.95 10.81 22.41 0.24 -8.71 16 15 C -0.01 -0.26 7.47 41.65 0.31 0.06 16 16 N -0.33 -11.65 4.40 -329.64 -1.45 -13.10 16 17 N -0.25 -11.87 8.97 -48.38 -0.43 -12.30 16 18 C 0.10 2.09 7.78 86.65 0.67 2.77 16 19 C -0.11 -1.19 7.17 31.57 0.23 -0.97 16 20 C -0.05 -0.86 6.85 30.58 0.21 -0.65 16 21 H 0.04 2.14 7.73 -2.39 -0.02 2.12 16 22 H 0.06 3.44 7.29 -2.39 -0.02 3.42 16 23 H 0.04 2.21 7.51 -2.38 -0.02 2.20 16 24 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.15 6.07 8.06 -2.91 -0.02 6.05 16 26 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -79.49 264.98 4.34 -75.15 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.14 Total: 9.88 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 4.85 Total: 13.41 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.61 Total: -104.47 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.07 Total: -38.89 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -79.49 4.34 -75.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151932311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.279 kcal (2) G-P(sol) polarization free energy of solvation -79.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds