Wall clock time and date at job start Sun Mar 29 2020 22:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36983 * 120.00112 * 2 1 4 4 H 1.08002 * 120.00396 * 171.05634 * 3 2 1 5 5 C 1.38981 * 119.99884 * 351.05797 * 3 2 1 6 6 N 1.31412 * 119.99918 * 5.59504 * 5 3 2 7 7 Si 1.86796 * 120.00036 * 185.59603 * 5 3 2 8 8 H 1.48508 * 109.47172 * 89.99986 * 7 5 3 9 9 H 1.48493 * 109.47118 * 209.99676 * 7 5 3 10 10 H 1.48500 * 109.47367 * 330.00213 * 7 5 3 11 11 C 1.34781 * 120.00111 * 179.97438 * 2 1 3 12 12 O 1.21635 * 119.99842 * 185.08773 * 11 2 1 13 13 C 1.47352 * 119.99935 * 5.08825 * 11 2 1 14 14 C 1.41733 * 126.50777 * 42.61191 * 13 11 2 15 15 N 1.30289 * 108.01707 * 179.97438 * 14 13 11 16 16 N 1.40514 * 109.03071 * 359.95869 * 15 14 13 17 17 C 1.34244 * 108.28955 * 0.22803 * 16 15 14 18 18 C 1.51383 * 110.37248 * 179.69938 * 17 16 15 19 19 C 1.54574 * 104.14475 * 343.53451 * 18 17 16 20 20 C 1.47255 * 140.81293 * 180.29009 * 16 15 14 21 21 H 1.08997 * 109.46936 * 185.48895 * 1 2 3 22 22 H 1.09002 * 109.46746 * 305.49185 * 1 2 3 23 23 H 1.09000 * 109.47027 * 65.49404 * 1 2 3 24 24 H 0.96998 * 119.99909 * 180.02562 * 6 5 3 25 25 H 1.08003 * 126.00699 * 359.92770 * 14 13 11 26 26 H 1.09002 * 110.49121 * 224.87356 * 18 17 16 27 27 H 1.08996 * 110.49970 * 102.20475 * 18 17 16 28 28 H 1.09002 * 110.98743 * 266.94775 * 19 18 17 29 29 H 1.08992 * 111.01981 * 143.14432 * 19 18 17 30 30 H 1.08996 * 110.22968 * 78.02631 * 20 16 15 31 31 H 1.08998 * 110.22536 * 316.14819 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.2201 1.1920 0.1454 5 6 1.4677 2.3826 -0.1871 6 7 0.1553 2.3870 -0.2539 7 14 2.4163 3.9842 -0.3435 8 1 2.7377 4.2316 -1.7721 9 1 1.5898 5.1019 0.1786 10 1 3.6754 3.8922 0.4383 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1692 0.0939 13 6 1.4065 -2.4409 -0.1121 14 6 0.3220 -2.7158 -0.9822 15 7 -0.0504 -3.9487 -0.7848 16 7 0.7645 -4.5203 0.2069 17 6 1.6461 -3.5932 0.6138 18 6 2.5462 -4.1590 1.6915 19 6 1.8072 -5.4284 2.1729 20 6 0.9621 -5.7868 0.9317 21 1 -0.3633 -1.0229 0.0983 22 1 -0.3633 0.5967 0.8368 23 1 -0.3633 0.4263 -0.9351 24 1 -0.3208 3.2219 -0.3849 25 1 -0.1191 -2.0246 -1.6851 26 1 2.6553 -3.4474 2.5099 27 1 3.5206 -4.4184 1.2776 28 1 1.1696 -5.2079 3.0291 29 1 2.5123 -6.2255 2.4086 30 1 1.4968 -6.5004 0.3049 31 1 0.0008 -6.2002 1.2370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154051102.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:46 Heat of formation + Delta-G solvation = 49.805918 kcal Electronic energy + Delta-G solvation = -16538.758765 eV Core-core repulsion = 13822.205778 eV Total energy + Delta-G solvation = -2716.552987 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.69715 -39.97019 -37.18910 -36.63216 -33.60016 -31.87395 -30.34627 -28.83888 -27.72303 -26.20299 -23.20421 -22.79064 -21.52492 -19.99623 -18.96910 -18.05538 -17.47958 -16.68440 -15.89742 -15.81830 -15.49328 -15.26983 -14.93185 -14.57587 -14.13712 -14.04523 -13.58133 -13.38355 -12.95030 -12.75986 -12.66846 -12.46140 -12.29601 -12.10365 -11.94744 -11.86005 -11.00992 -10.45092 -10.20604 -9.87123 -9.43296 -8.23759 -5.88511 0.67942 1.23505 1.35976 1.42280 1.47796 1.55817 2.27372 2.35689 3.10782 3.17344 3.21926 3.57193 3.77390 3.95109 4.13416 4.36387 4.45181 4.53030 4.60889 4.67815 4.80763 4.90374 5.02063 5.11970 5.20598 5.44707 5.45734 5.51216 5.80122 6.07912 6.50729 6.67464 7.17796 7.50110 8.07259 8.69067 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047524 B = 0.006728 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.028456 B = 4160.718439 C = 4504.610045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.455 5.455 3 C -0.341 4.341 4 H 0.079 0.921 5 C -0.006 4.006 6 N -0.898 5.898 7 Si 0.997 3.003 8 H -0.271 1.271 9 H -0.268 1.268 10 H -0.273 1.273 11 C 0.506 3.494 12 O -0.642 6.642 13 C -0.280 4.280 14 C 0.079 3.921 15 N -0.298 5.298 16 N -0.388 5.388 17 C 0.102 3.898 18 C -0.072 4.072 19 C -0.111 4.111 20 C 0.116 3.884 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.272 0.728 25 H 0.200 0.800 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -13.971 4.560 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.172 5.172 3 C -0.469 4.469 4 H 0.097 0.903 5 C -0.207 4.207 6 N -0.538 5.538 7 Si 0.820 3.180 8 H -0.196 1.196 9 H -0.193 1.193 10 H -0.198 1.198 11 C 0.296 3.704 12 O -0.531 6.531 13 C -0.295 4.295 14 C -0.107 4.107 15 N -0.117 5.117 16 N -0.169 5.169 17 C -0.032 4.032 18 C -0.111 4.111 19 C -0.149 4.149 20 C -0.002 4.002 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.216 0.784 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.161 0.839 30 H 0.128 0.872 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.131 -14.931 4.197 15.656 hybrid contribution 0.737 1.927 -0.206 2.073 sum -1.394 -13.005 3.991 13.674 Atomic orbital electron populations 1.21699 0.78879 0.97871 1.02630 1.43764 1.07043 1.04529 1.61891 1.19792 0.93522 0.84117 1.49430 0.90321 1.26138 0.96845 1.02239 0.95432 1.70271 1.06825 1.28478 1.48180 0.84877 0.77858 0.76492 0.78739 1.19649 1.19265 1.19751 1.17569 0.86300 0.83291 0.83212 1.90507 1.15686 1.87916 1.59020 1.19715 1.06009 0.95329 1.08432 1.24290 0.94275 0.93458 0.98666 1.76972 1.16902 1.09566 1.08302 1.50469 1.24614 1.12639 1.29186 1.22991 0.93474 0.89688 0.97016 1.21121 0.97570 0.97998 0.94415 1.22912 0.99078 0.96906 0.95955 1.22916 1.03532 0.80965 0.92792 0.92800 0.93269 0.92361 0.91740 0.78361 0.89194 0.87680 0.88318 0.83920 0.87247 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.50 8.02 127.77 1.02 7.53 16 2 N -0.46 -25.55 3.02 -662.68 -2.00 -27.55 16 3 C -0.34 -20.30 9.54 84.07 0.80 -19.50 16 4 H 0.08 4.96 7.19 -2.91 -0.02 4.94 16 5 C -0.01 -0.32 5.46 84.93 0.46 0.14 16 6 N -0.90 -48.25 9.48 21.67 0.21 -48.04 16 7 Si 1.00 43.50 29.56 68.60 2.03 45.53 16 8 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.51 27.74 7.50 86.64 0.65 28.39 16 12 O -0.64 -39.29 16.69 -4.14 -0.07 -39.36 16 13 C -0.28 -12.50 5.12 -20.00 -0.10 -12.60 16 14 C 0.08 3.13 9.64 85.79 0.83 3.96 16 15 N -0.30 -10.87 12.64 -56.05 -0.71 -11.58 16 16 N -0.39 -12.09 4.81 -328.13 -1.58 -13.67 16 17 C 0.10 3.67 7.50 42.42 0.32 3.99 16 18 C -0.07 -1.82 6.86 30.60 0.21 -1.61 16 19 C -0.11 -1.47 7.18 31.60 0.23 -1.24 16 20 C 0.12 2.00 7.77 86.70 0.67 2.68 16 21 H 0.05 2.35 4.70 -2.39 -0.01 2.33 16 22 H 0.05 2.55 7.10 -2.39 -0.02 2.53 16 23 H 0.06 2.92 7.02 -2.39 -0.02 2.91 16 24 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 25 H 0.20 7.23 7.51 -2.91 -0.02 7.21 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -76.92 262.81 4.11 -72.81 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.15 Total: 10.13 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.09 Total: 11.74 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -4.08 Total: -100.84 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.07 Total: -39.36 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.92 4.11 -72.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154051102.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.614 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds