Wall clock time and date at job start Sun Mar 29 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00139 * 2 1 4 4 C 1.34779 * 120.00245 * 179.97438 * 2 1 3 5 5 O 1.21598 * 119.99592 * 354.13924 * 4 2 1 6 6 C 1.47536 * 120.00250 * 174.12808 * 4 2 1 7 7 C 1.40358 * 120.47458 * 325.16541 * 6 4 2 8 8 C 1.36875 * 118.49334 * 179.97438 * 7 6 4 9 9 C 1.39470 * 119.37355 * 359.97438 * 8 7 6 10 10 N 1.38361 * 119.54219 * 179.97438 * 9 8 7 11 11 C 1.36844 * 120.00413 * 5.11458 * 10 9 8 12 12 H 1.07994 * 119.99529 * 5.05751 * 11 10 9 13 13 C 1.38894 * 120.00123 * 185.06068 * 11 10 9 14 14 N 1.31505 * 120.00238 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99895 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47164 * 60.00183 * 15 13 11 17 17 H 1.48506 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47212 * 300.00136 * 15 13 11 19 19 N 1.32688 * 120.90862 * 0.02562 * 9 8 7 20 20 C 1.31610 * 121.64003 * 359.97438 * 19 9 8 21 21 H 1.09004 * 109.47288 * 270.00454 * 1 2 3 22 22 H 1.09005 * 109.47429 * 30.00142 * 1 2 3 23 23 H 1.08999 * 109.47242 * 150.00489 * 1 2 3 24 24 H 1.09006 * 109.47162 * 274.76991 * 3 2 1 25 25 H 1.09002 * 109.47201 * 34.76959 * 3 2 1 26 26 H 1.09005 * 109.47617 * 154.77290 * 3 2 1 27 27 H 1.08001 * 120.75071 * 359.95583 * 7 6 4 28 28 H 1.07998 * 120.31463 * 179.72505 * 8 7 6 29 29 H 0.97004 * 120.00120 * 185.10355 * 10 9 8 30 30 H 0.96999 * 120.00385 * 180.02562 * 14 13 11 31 31 H 1.08000 * 119.73407 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5356 -2.2174 0.1085 6 6 3.6084 -1.1706 -0.1302 7 6 4.2540 -0.2163 -0.9318 8 6 5.6191 -0.2565 -1.0237 9 6 6.3233 -1.2359 -0.3237 10 7 7.7032 -1.2801 -0.4144 11 6 8.3754 -0.3058 -1.1012 12 1 7.8378 0.5405 -1.5024 13 6 9.7488 -0.4056 -1.2822 14 7 10.4033 -1.4365 -0.7941 15 14 10.6662 0.9241 -2.2202 16 1 10.4888 2.2277 -1.5315 17 1 12.1109 0.5847 -2.2741 18 1 10.1281 1.0165 -3.6012 19 7 5.6880 -2.1264 0.4274 20 6 4.3770 -2.1226 0.5428 21 1 -0.3634 0.0001 1.0277 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3634 -0.8900 -0.5137 24 1 2.3051 1.6261 -1.0242 25 1 1.6481 2.0055 0.5861 26 1 3.1843 1.1186 0.4380 27 1 3.6864 0.5325 -1.4643 28 1 6.1456 0.4608 -1.6357 29 1 8.1943 -2.0017 0.0088 30 1 11.3625 -1.5060 -0.9202 31 1 3.8917 -2.8618 1.1629 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533547.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:53 Heat of formation + Delta-G solvation = -6.974464 kcal Electronic energy + Delta-G solvation = -15937.780826 eV Core-core repulsion = 13218.765657 eV Total energy + Delta-G solvation = -2719.015169 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37883 -39.97910 -37.13485 -36.49392 -34.00346 -33.23174 -30.68720 -28.77590 -27.48670 -26.46008 -24.20858 -23.50584 -20.75193 -19.75259 -18.68087 -18.06535 -17.24544 -16.92687 -16.41990 -16.31790 -15.38663 -15.17647 -14.98160 -14.74213 -14.24150 -13.84255 -13.66053 -13.37883 -13.14350 -13.06456 -13.00124 -12.70909 -12.41896 -12.14477 -12.03079 -10.97206 -10.70583 -10.53231 -10.11630 -9.59822 -8.86008 -8.61248 -5.89334 0.25703 0.75617 1.44383 1.50147 1.56420 1.95413 2.19751 2.24410 2.86511 3.02359 3.38556 3.82982 3.93588 4.12186 4.41899 4.50559 4.56121 4.56475 4.70349 4.83388 4.96663 4.99428 5.05737 5.23328 5.26781 5.49261 5.62367 5.69648 6.06881 6.42431 6.58732 7.01899 7.27365 7.29078 7.71357 8.55878 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047342 B = 0.005480 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.293511 B = 5107.903090 C = 5600.650126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.621 5.621 3 C 0.071 3.929 4 C 0.576 3.424 5 O -0.597 6.597 6 C -0.328 4.328 7 C 0.014 3.986 8 C -0.267 4.267 9 C 0.351 3.649 10 N -0.533 5.533 11 C -0.326 4.326 12 H 0.122 0.878 13 C -0.020 4.020 14 N -0.916 5.916 15 Si 1.009 2.991 16 H -0.259 1.259 17 H -0.282 1.282 18 H -0.260 1.260 19 N -0.604 5.604 20 C 0.208 3.792 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.137 0.863 29 H 0.393 0.607 30 H 0.282 0.718 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 9.766 -1.265 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C -0.070 4.070 4 C 0.368 3.632 5 O -0.479 6.479 6 C -0.341 4.341 7 C -0.011 4.011 8 C -0.293 4.293 9 C 0.107 3.893 10 N -0.136 5.136 11 C -0.456 4.456 12 H 0.140 0.860 13 C -0.222 4.222 14 N -0.552 5.552 15 Si 0.831 3.169 16 H -0.183 1.183 17 H -0.208 1.208 18 H -0.185 1.185 19 N -0.325 5.325 20 C 0.042 3.958 21 H 0.076 0.924 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.178 0.822 28 H 0.155 0.845 29 H 0.226 0.774 30 H 0.091 0.909 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.105 8.758 -0.921 14.173 hybrid contribution 0.532 0.226 -0.368 0.685 sum -10.573 8.984 -1.289 13.934 Atomic orbital electron populations 1.21734 0.78041 1.03575 1.02270 1.47721 1.07757 1.06389 1.73518 1.22247 0.97632 0.84024 1.03137 1.18224 0.86972 0.83229 0.74808 1.90674 1.70875 1.33031 1.53362 1.19964 0.93016 1.06408 1.14665 1.21368 0.92997 0.94312 0.92431 1.20982 0.94847 1.04587 1.08879 1.18867 0.85435 0.92196 0.92792 1.40975 1.01722 1.24787 1.46098 1.20223 0.91271 1.02423 1.31647 0.86042 1.26454 0.97373 1.00237 0.98099 1.69787 1.10546 1.30701 1.44184 0.84725 0.76463 0.77144 0.78572 1.18317 1.20757 1.18454 1.67170 1.11257 1.28734 1.25340 1.22369 0.87415 0.93311 0.92677 0.92429 0.87988 0.92500 0.90512 0.88876 0.91253 0.82200 0.84533 0.77366 0.90888 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.41 127.77 1.33 3.00 16 2 N -0.62 -15.66 3.27 -875.68 -2.87 -18.53 16 3 C 0.07 1.29 8.85 127.77 1.13 2.42 16 4 C 0.58 19.98 7.37 86.70 0.64 20.61 16 5 O -0.60 -24.71 16.48 -4.03 -0.07 -24.77 16 6 C -0.33 -12.03 5.17 -19.97 -0.10 -12.13 16 7 C 0.01 0.45 7.66 22.47 0.17 0.62 16 8 C -0.27 -10.47 9.24 22.25 0.21 -10.26 16 9 C 0.35 16.31 7.60 133.28 1.01 17.33 16 10 N -0.53 -26.86 5.41 -189.24 -1.02 -27.88 16 11 C -0.33 -15.93 9.50 84.07 0.80 -15.13 16 12 H 0.12 5.39 5.71 -2.91 -0.02 5.37 16 13 C -0.02 -0.96 5.50 84.90 0.47 -0.49 16 14 N -0.92 -48.03 13.06 21.66 0.28 -47.75 16 15 Si 1.01 37.35 29.55 68.60 2.03 39.38 16 16 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 17 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 19 N -0.60 -27.90 10.39 -192.26 -2.00 -29.90 16 20 C 0.21 8.57 10.78 85.07 0.92 9.49 16 21 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 22 H 0.10 1.22 8.07 -2.38 -0.02 1.20 16 23 H 0.06 1.31 7.51 -2.39 -0.02 1.29 16 24 H 0.08 1.08 7.05 -2.38 -0.02 1.06 16 25 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 26 H 0.07 1.52 5.75 -2.38 -0.01 1.51 16 27 H 0.16 3.93 5.58 -2.91 -0.02 3.91 16 28 H 0.14 5.05 5.98 -2.91 -0.02 5.03 16 29 H 0.39 21.08 8.02 -92.71 -0.74 20.34 16 30 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.15 5.78 8.00 -2.91 -0.02 5.76 16 Total: -1.00 -63.19 267.80 3.35 -59.84 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.43 Total: 34.16 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 6.57 Total: 15.45 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -5.61 Total: -124.06 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.07 Total: -24.77 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -63.19 3.35 -59.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533547.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.866 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds