Wall clock time and date at job start Sun Mar 29 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47325 * 2 1 4 4 C 1.34786 * 120.00006 * 180.02562 * 3 2 1 5 5 O 1.21595 * 119.99926 * 359.97438 * 4 3 2 6 6 C 1.47450 * 119.99509 * 179.97438 * 4 3 2 7 7 C 1.39959 * 120.61641 * 5.67000 * 6 4 3 8 8 C 1.38349 * 118.36915 * 180.23797 * 7 6 4 9 9 C 1.38460 * 119.51124 * 359.48625 * 8 7 6 10 10 N 1.31782 * 121.22336 * 0.25615 * 9 8 7 11 11 C 1.32498 * 121.77426 * 359.97438 * 10 9 8 12 12 N 1.38214 * 119.82521 * 179.97438 * 11 10 9 13 13 C 1.36894 * 120.00309 * 354.53701 * 12 11 10 14 14 H 1.08003 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.38870 * 119.99891 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00530 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46877 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47243 * 119.99415 * 17 15 13 20 20 H 1.48493 * 109.47237 * 239.99864 * 17 15 13 21 21 H 1.09000 * 109.47532 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47053 * 300.00299 * 1 2 3 23 23 H 1.09001 * 109.47284 * 60.00299 * 1 2 3 24 24 H 1.09003 * 109.47507 * 239.99977 * 2 1 3 25 25 H 1.09001 * 109.47284 * 119.99701 * 2 1 3 26 26 H 0.96999 * 119.99997 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.81507 * 359.97438 * 7 6 4 28 28 H 1.07999 * 120.24325 * 179.76655 * 8 7 6 29 29 H 1.08002 * 119.38740 * 180.22937 * 9 8 7 30 30 H 0.96999 * 120.00223 * 174.52934 * 12 11 10 31 31 H 0.96995 * 120.00669 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1336 0.7032 -0.0005 6 6 3.8349 3.0176 -0.0011 7 6 2.9424 4.0892 0.1179 8 6 3.4536 5.3747 0.1070 9 6 4.8202 5.5644 -0.0092 10 7 5.6452 4.5421 -0.1149 11 6 5.2094 3.2909 -0.1145 12 7 6.1105 2.2491 -0.2282 13 6 7.4352 2.5112 -0.4528 14 1 7.7761 3.5321 -0.5416 15 6 8.3406 1.4644 -0.5664 16 7 7.9255 0.2212 -0.4577 17 14 10.1481 1.8220 -0.8737 18 1 10.3550 3.2902 -0.9564 19 1 10.9585 1.2695 0.2413 20 1 10.5675 1.1908 -2.1507 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3880 2.1185 -0.0004 27 1 1.8804 3.9169 0.2116 28 1 2.7919 6.2239 0.1930 29 1 5.2174 6.5687 -0.0138 30 1 5.8043 1.3321 -0.1486 31 1 8.5580 -0.5100 -0.5367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:20 Heat of formation + Delta-G solvation = 1.585166 kcal Electronic energy + Delta-G solvation = -16197.209447 eV Core-core repulsion = 13478.565451 eV Total energy + Delta-G solvation = -2718.643996 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66089 -37.98210 -35.50768 -34.58861 -32.07893 -31.70979 -29.92051 -28.52452 -24.86038 -23.89230 -22.43432 -21.19191 -20.21819 -17.76111 -17.11132 -16.60934 -15.76465 -15.13959 -14.86744 -14.41294 -14.11717 -13.68979 -13.42601 -13.26142 -12.75538 -12.38915 -12.12619 -11.80482 -11.63815 -11.42595 -11.36810 -11.31841 -10.51763 -10.39405 -10.37135 -9.17355 -8.98908 -8.76179 -8.60438 -8.22347 -7.02701 -6.66192 -3.78746 1.84133 2.50895 3.15387 3.16414 3.22874 3.72042 3.79351 4.00235 4.73130 5.01915 5.07509 5.16332 5.31607 5.37279 5.53411 5.59296 5.81681 5.88208 6.03115 6.09490 6.23302 6.52401 6.64611 6.89982 6.94661 7.12947 7.29960 7.57387 7.92204 8.05965 8.64114 8.91070 9.01900 9.30387 9.83029 10.45913 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.008119 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.543232 B = 3448.040043 C = 4616.402577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.740 5.740 4 C 0.567 3.433 5 O -0.551 6.551 6 C -0.328 4.328 7 C 0.020 3.980 8 C -0.329 4.329 9 C 0.184 3.816 10 N -0.540 5.540 11 C 0.358 3.642 12 N -0.478 5.478 13 C -0.289 4.289 14 H 0.117 0.883 15 C 0.020 3.980 16 N -0.859 5.859 17 Si 0.941 3.059 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.394 0.606 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.429 0.571 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 3.190 0.560 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.394 5.394 4 C 0.360 3.640 5 O -0.431 6.431 6 C -0.343 4.343 7 C -0.006 4.006 8 C -0.356 4.356 9 C 0.010 3.990 10 N -0.257 5.257 11 C 0.109 3.891 12 N -0.088 5.088 13 C -0.421 4.421 14 H 0.135 0.865 15 C -0.187 4.187 16 N -0.492 5.492 17 Si 0.766 3.234 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.229 0.771 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.279 0.721 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.060 2.037 0.422 9.296 hybrid contribution -0.623 -0.046 -0.002 0.625 sum -9.683 1.991 0.421 9.894 Atomic orbital electron populations 1.21992 0.95070 1.02726 1.02220 1.21173 0.93470 0.83911 1.02185 1.45792 1.07197 1.07896 1.78490 1.18229 0.81466 0.88917 0.75375 1.90495 1.54176 1.46189 1.52243 1.19273 0.93604 0.92024 1.29374 1.20975 0.96921 0.92342 0.90377 1.21034 0.96563 0.96273 1.21700 1.22276 0.89874 0.96445 0.90396 1.67199 1.38698 0.98128 1.21686 1.17896 0.85901 0.87210 0.98115 1.42215 1.06163 1.08502 1.51875 1.20308 0.82762 0.95807 1.43206 0.86502 1.25668 1.01845 0.94567 0.96629 1.69783 1.36736 0.98858 1.43839 0.85627 0.80296 0.79328 0.78151 1.18566 1.20259 1.20291 0.91188 0.92204 0.92178 0.91880 0.91914 0.77123 0.87368 0.87146 0.84585 0.72092 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.03 37.15 0.37 -1.17 16 2 C 0.12 1.63 6.39 -4.05 -0.03 1.61 16 3 N -0.74 -11.90 5.51 -61.38 -0.34 -12.24 16 4 C 0.57 12.30 7.75 -12.50 -0.10 12.20 16 5 O -0.55 -14.25 13.68 5.28 0.07 -14.18 16 6 C -0.33 -7.28 5.91 -104.61 -0.62 -7.90 16 7 C 0.02 0.35 9.63 -38.90 -0.37 -0.02 16 8 C -0.33 -5.71 10.09 -39.46 -0.40 -6.11 16 9 C 0.18 3.56 11.17 -17.49 -0.20 3.36 16 10 N -0.54 -12.93 9.09 -12.17 -0.11 -13.05 16 11 C 0.36 9.15 7.44 -155.15 -1.15 8.00 16 12 N -0.48 -13.50 5.29 -10.95 -0.06 -13.56 16 13 C -0.29 -8.13 9.70 -15.06 -0.15 -8.27 16 14 H 0.12 3.24 7.09 -52.48 -0.37 2.86 16 15 C 0.02 0.54 5.50 -17.46 -0.10 0.45 16 16 N -0.86 -24.42 13.05 55.49 0.72 -23.69 16 17 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.39 5.11 6.61 -40.82 -0.27 4.84 16 27 H 0.11 1.48 6.55 -52.49 -0.34 1.14 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.43 12.64 4.40 -40.91 -0.18 12.46 16 31 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 270.86 15.07 4.08 4.08 Total: -1.00 -32.12 270.86 -6.64 -38.76 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -3.26 Total: 16.22 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.73 Total: 2.15 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.22 Total: -62.54 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.12 -6.64 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.344 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds