Wall clock time and date at job start Sun Mar 29 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47325 * 2 1 4 4 C 1.34786 * 120.00006 * 180.02562 * 3 2 1 5 5 O 1.21595 * 119.99926 * 359.97438 * 4 3 2 6 6 C 1.47450 * 119.99509 * 179.97438 * 4 3 2 7 7 C 1.39959 * 120.61641 * 5.67000 * 6 4 3 8 8 C 1.38349 * 118.36915 * 180.23797 * 7 6 4 9 9 C 1.38460 * 119.51124 * 359.48625 * 8 7 6 10 10 N 1.31782 * 121.22336 * 0.25615 * 9 8 7 11 11 C 1.32498 * 121.77426 * 359.97438 * 10 9 8 12 12 N 1.38214 * 119.82521 * 179.97438 * 11 10 9 13 13 C 1.36894 * 120.00309 * 354.53701 * 12 11 10 14 14 H 1.08003 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.38870 * 119.99891 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00530 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99891 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46877 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47243 * 119.99415 * 17 15 13 20 20 H 1.48493 * 109.47237 * 239.99864 * 17 15 13 21 21 H 1.09000 * 109.47532 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47053 * 300.00299 * 1 2 3 23 23 H 1.09001 * 109.47284 * 60.00299 * 1 2 3 24 24 H 1.09003 * 109.47507 * 239.99977 * 2 1 3 25 25 H 1.09001 * 109.47284 * 119.99701 * 2 1 3 26 26 H 0.96999 * 119.99997 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.81507 * 359.97438 * 7 6 4 28 28 H 1.07999 * 120.24325 * 179.76655 * 8 7 6 29 29 H 1.08002 * 119.38740 * 180.22937 * 9 8 7 30 30 H 0.96999 * 120.00223 * 174.52934 * 12 11 10 31 31 H 0.96995 * 120.00669 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1336 0.7032 -0.0005 6 6 3.8349 3.0176 -0.0011 7 6 2.9424 4.0892 0.1179 8 6 3.4536 5.3747 0.1070 9 6 4.8202 5.5644 -0.0092 10 7 5.6452 4.5421 -0.1149 11 6 5.2094 3.2909 -0.1145 12 7 6.1105 2.2491 -0.2282 13 6 7.4352 2.5112 -0.4528 14 1 7.7761 3.5321 -0.5416 15 6 8.3406 1.4644 -0.5664 16 7 7.9255 0.2212 -0.4577 17 14 10.1481 1.8220 -0.8737 18 1 10.3550 3.2902 -0.9564 19 1 10.9585 1.2695 0.2413 20 1 10.5675 1.1908 -2.1507 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3880 2.1185 -0.0004 27 1 1.8804 3.9169 0.2116 28 1 2.7919 6.2239 0.1930 29 1 5.2174 6.5687 -0.0138 30 1 5.8043 1.3321 -0.1486 31 1 8.5580 -0.5100 -0.5367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:19 Heat of formation + Delta-G solvation = -22.194995 kcal Electronic energy + Delta-G solvation = -16198.240632 eV Core-core repulsion = 13478.565451 eV Total energy + Delta-G solvation = -2719.675181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36924 -39.66108 -37.22623 -36.11659 -33.89785 -33.34524 -31.24646 -30.17478 -26.73256 -25.40425 -23.74970 -22.82409 -21.84329 -19.64291 -18.72309 -18.24295 -17.35489 -16.64243 -16.47154 -16.09451 -15.62050 -15.22222 -15.10153 -14.93006 -14.41095 -13.71387 -13.46966 -13.30416 -13.09456 -13.04563 -12.64537 -12.45279 -12.36431 -12.12409 -12.07019 -10.89423 -10.75775 -10.53375 -10.05905 -9.92040 -8.81035 -8.55059 -5.82528 0.20196 0.88139 1.36552 1.46780 1.54872 2.10170 2.23541 2.33598 2.90001 3.26051 3.49885 3.96425 4.07584 4.22384 4.23209 4.33748 4.53645 4.60383 4.82500 4.98227 5.07080 5.07535 5.26609 5.33053 5.34521 5.52792 5.55338 5.80047 6.19908 6.64615 6.72915 7.14496 7.35550 7.48178 7.95769 8.61077 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.008119 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.543232 B = 3448.040043 C = 4616.402577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 N -0.714 5.714 4 C 0.559 3.441 5 O -0.599 6.599 6 C -0.345 4.345 7 C 0.025 3.975 8 C -0.294 4.294 9 C 0.174 3.826 10 N -0.584 5.584 11 C 0.357 3.643 12 N -0.531 5.531 13 C -0.319 4.319 14 H 0.108 0.892 15 C -0.034 4.034 16 N -0.917 5.917 17 Si 1.013 2.987 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.272 1.272 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.413 0.587 27 H 0.163 0.837 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.417 0.583 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 6.014 0.787 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 N -0.368 5.368 4 C 0.351 3.649 5 O -0.482 6.482 6 C -0.359 4.359 7 C -0.001 4.001 8 C -0.319 4.319 9 C 0.005 3.995 10 N -0.303 5.303 11 C 0.111 3.889 12 N -0.145 5.145 13 C -0.450 4.450 14 H 0.125 0.875 15 C -0.234 4.234 16 N -0.554 5.554 17 Si 0.834 3.166 18 H -0.179 1.179 19 H -0.197 1.197 20 H -0.197 1.197 21 H 0.105 0.895 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.252 0.748 27 H 0.180 0.820 28 H 0.183 0.817 29 H 0.194 0.806 30 H 0.265 0.735 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.532 4.997 0.657 13.507 hybrid contribution -0.119 -0.556 -0.004 0.568 sum -12.651 4.441 0.652 13.424 Atomic orbital electron populations 1.21931 0.90718 1.04376 1.03606 1.21378 0.96878 0.82296 1.00830 1.45615 1.05445 1.09679 1.76026 1.18423 0.82978 0.88392 0.75103 1.90497 1.55904 1.47510 1.54315 1.19703 0.93185 0.93890 1.29153 1.21573 0.98986 0.91173 0.88332 1.21727 0.96283 0.97744 1.16182 1.23184 0.91033 0.97036 0.88213 1.67259 1.40777 0.98415 1.23826 1.18647 0.87209 0.87732 0.95314 1.42205 1.06530 1.08399 1.57399 1.20344 0.83721 0.95584 1.45349 0.87460 1.26609 1.06126 0.94117 0.96597 1.69909 1.37941 0.99721 1.47867 0.84590 0.74711 0.79194 0.78094 1.17938 1.19684 1.19706 0.89522 0.90638 0.90823 0.93543 0.93261 0.74847 0.82006 0.81742 0.80622 0.73493 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.03 71.98 0.72 -1.56 16 2 C 0.11 2.93 6.39 86.38 0.55 3.48 16 3 N -0.71 -21.44 5.51 -466.35 -2.57 -24.01 16 4 C 0.56 24.26 7.75 86.67 0.67 24.93 16 5 O -0.60 -32.64 13.68 -4.01 -0.05 -32.69 16 6 C -0.35 -14.90 5.91 -19.86 -0.12 -15.02 16 7 C 0.03 0.77 9.63 22.71 0.22 0.99 16 8 C -0.29 -8.37 10.09 22.35 0.23 -8.14 16 9 C 0.17 6.07 11.17 84.75 0.95 7.01 16 10 N -0.58 -27.75 9.09 -192.42 -1.75 -29.50 16 11 C 0.36 18.64 7.44 133.66 0.99 19.63 16 12 N -0.53 -31.96 5.29 -188.57 -1.00 -32.95 16 13 C -0.32 -19.23 9.70 84.05 0.82 -18.42 16 14 H 0.11 6.34 7.09 -2.91 -0.02 6.32 16 15 C -0.03 -1.99 5.50 84.89 0.47 -1.52 16 16 N -0.92 -56.38 13.05 21.66 0.28 -56.10 16 17 Si 1.01 44.78 29.55 68.60 2.03 46.81 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.41 8.85 6.61 -92.71 -0.61 8.24 16 27 H 0.16 3.22 6.55 -2.91 -0.02 3.20 16 28 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.42 26.56 4.40 -94.18 -0.41 26.14 16 31 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -79.00 270.86 2.58 -76.42 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: 0.14 Total: 40.63 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.50 Total: 11.39 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -5.03 Total: -142.56 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.05 Total: -32.69 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -79.00 2.58 -76.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.229 kcal (2) G-P(sol) polarization free energy of solvation -79.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds