Wall clock time and date at job start Sun Mar 29 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33206 * 1 3 3 O 1.35882 * 119.99599 * 2 1 4 4 C 1.42892 * 117.00205 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.47922 * 120.00318 * 180.02562 * 2 1 3 7 7 C 1.40071 * 120.09835 * 359.97438 * 6 2 1 8 8 C 1.38245 * 117.97521 * 179.97438 * 7 6 2 9 9 C 1.39746 * 118.01669 * 0.02562 * 8 7 6 10 10 N 1.38694 * 120.03971 * 179.97438 * 9 8 7 11 11 C 1.36860 * 120.00494 * 0.02562 * 10 9 8 12 12 H 1.08002 * 119.99645 * 359.97438 * 11 10 9 13 13 C 1.38814 * 120.00602 * 180.02562 * 11 10 9 14 14 N 1.31566 * 119.99441 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00281 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47403 * 60.00200 * 15 13 11 17 17 H 1.48505 * 109.47187 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47544 * 299.99935 * 15 13 11 19 19 N 1.32659 * 119.91526 * 359.97438 * 9 8 7 20 20 N 1.28357 * 122.18166 * 0.02562 * 19 9 8 21 21 H 1.08000 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.08009 * 119.99872 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47225 * 299.99260 * 4 3 2 24 24 H 1.09000 * 109.47163 * 60.00024 * 4 3 2 25 25 H 1.09001 * 109.47443 * 180.02562 * 5 4 3 26 26 H 1.09002 * 109.47150 * 300.00136 * 5 4 3 27 27 H 1.08997 * 109.47272 * 59.99687 * 5 4 3 28 28 H 1.08005 * 121.01508 * 359.96233 * 7 6 2 29 29 H 1.07999 * 120.98986 * 179.72741 * 8 7 6 30 30 H 0.97006 * 119.99879 * 179.97438 * 10 9 8 31 31 H 0.97004 * 119.99835 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3321 0.0000 0.0000 3 8 2.0114 1.1768 0.0000 4 6 1.2331 2.3752 0.0006 5 6 2.1651 3.5886 0.0011 6 6 2.0717 -1.2810 -0.0006 7 6 1.3735 -2.4953 -0.0006 8 6 2.1087 -3.6661 -0.0017 9 6 3.5026 -3.5659 -0.0022 10 7 4.2811 -4.7137 -0.0027 11 6 3.6845 -5.9454 -0.0033 12 1 2.6073 -6.0236 -0.0029 13 6 4.4637 -7.0942 -0.0033 14 7 5.7759 -6.9989 -0.0033 15 14 3.6493 -8.7752 -0.0034 16 1 2.8035 -8.9155 -1.2160 17 1 4.6935 -9.8312 -0.0041 18 1 2.8034 -8.9157 1.2090 19 7 4.0801 -2.3716 -0.0021 20 7 3.3996 -1.2832 -0.0011 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9354 -0.0004 23 1 0.6040 2.4003 -0.8892 24 1 0.6046 2.3998 0.8908 25 1 1.5714 4.5028 0.0020 26 1 2.7939 3.5634 0.8911 27 1 2.7939 3.5642 -0.8888 28 1 0.2937 -2.5163 0.0004 29 1 1.6204 -4.6293 0.0027 30 1 5.2487 -4.6435 -0.0034 31 1 6.3205 -7.8017 -0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534077.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:47 Heat of formation + Delta-G solvation = 36.562170 kcal Electronic energy + Delta-G solvation = -15577.649285 eV Core-core repulsion = 12860.522006 eV Total energy + Delta-G solvation = -2717.127279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86490 -38.76018 -35.97443 -33.27916 -32.44829 -31.49024 -30.11045 -28.74493 -25.49274 -23.72197 -23.29729 -22.14283 -19.70533 -18.44765 -17.24749 -16.63265 -16.16547 -15.80664 -15.44220 -14.75581 -14.03749 -13.85671 -13.49396 -12.94243 -12.79363 -12.66292 -12.17084 -11.96536 -11.72983 -11.63647 -11.08685 -11.08618 -10.75653 -10.64236 -10.63198 -10.17687 -9.38475 -9.26168 -8.50852 -8.31439 -7.26311 -6.94033 -4.12007 1.64746 1.97377 2.91043 2.98073 3.00681 3.17230 3.46547 3.74196 4.50748 4.56671 4.98254 5.02473 5.02813 5.18822 5.30907 5.47028 5.55103 5.79621 5.85592 5.94391 6.00990 6.01715 6.15479 6.32380 6.61603 6.80021 6.85278 6.97939 7.14805 7.44562 7.93791 8.34700 8.85759 9.06157 10.00240 10.20583 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.064583 B = 0.004678 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.449106 B = 5984.172935 C = 6397.175869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.355 4.355 2 C 0.188 3.812 3 O -0.307 6.307 4 C 0.055 3.945 5 C -0.151 4.151 6 C -0.055 4.055 7 C -0.055 4.055 8 C -0.197 4.197 9 C 0.283 3.717 10 N -0.496 5.496 11 C -0.308 4.308 12 H 0.110 0.890 13 C 0.030 3.970 14 N -0.866 5.866 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.267 1.267 19 N -0.344 5.344 20 N -0.156 5.156 21 H 0.102 0.898 22 H 0.110 0.890 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.410 0.590 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 8.356 0.010 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.397 4.397 2 C 0.140 3.860 3 O -0.220 6.220 4 C -0.020 4.020 5 C -0.208 4.208 6 C -0.204 4.204 7 C -0.082 4.082 8 C -0.231 4.231 9 C 0.035 3.965 10 N -0.099 5.099 11 C -0.440 4.440 12 H 0.127 0.873 13 C -0.178 4.178 14 N -0.499 5.499 15 Si 0.767 3.233 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.192 1.192 19 N -0.207 5.207 20 N -0.005 5.005 21 H 0.121 0.879 22 H 0.129 0.871 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.246 0.754 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.035 8.636 0.010 11.138 hybrid contribution -1.570 -1.642 0.001 2.271 sum -8.604 6.994 0.011 11.088 Atomic orbital electron populations 1.23833 0.93537 1.02709 1.19606 1.19060 0.89981 0.83338 0.93608 1.86119 1.35936 1.11968 1.88001 1.22681 0.94540 0.83896 1.00902 1.21752 1.00136 0.95266 1.03634 1.19893 0.92170 0.90390 1.17909 1.21660 1.00026 0.91165 0.95375 1.21409 0.93084 0.98986 1.09580 1.19931 0.89652 0.88748 0.98132 1.40818 1.08775 1.01675 1.58612 1.19853 0.94122 0.81331 1.48647 0.87274 1.25511 0.95442 1.00980 0.95842 1.69690 1.04096 1.32052 1.44063 0.85720 0.78778 0.79267 0.79531 1.19207 1.20246 1.19204 1.72876 1.29483 0.93589 1.24702 1.72777 1.05524 1.19540 1.02693 0.87941 0.87147 0.92501 0.92509 0.90931 0.91563 0.91558 0.85059 0.84367 0.75361 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -5.33 13.19 28.98 0.38 -4.94 16 2 C 0.19 3.41 6.85 -37.37 -0.26 3.16 16 3 O -0.31 -5.42 10.00 -19.37 -0.19 -5.61 16 4 C 0.06 0.69 5.45 37.16 0.20 0.89 16 5 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 6 C -0.06 -1.16 6.83 -82.80 -0.57 -1.72 16 7 C -0.06 -1.06 9.51 -38.89 -0.37 -1.43 16 8 C -0.20 -4.13 9.40 -39.02 -0.37 -4.50 16 9 C 0.28 6.76 7.71 -154.87 -1.19 5.57 16 10 N -0.50 -12.20 5.43 -11.04 -0.06 -12.26 16 11 C -0.31 -7.41 9.55 -15.09 -0.14 -7.56 16 12 H 0.11 2.42 5.69 -52.49 -0.30 2.12 16 13 C 0.03 0.72 5.50 -17.45 -0.10 0.62 16 14 N -0.87 -21.70 13.05 55.49 0.72 -20.98 16 15 Si 0.94 18.10 29.55 -169.99 -5.02 13.08 16 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 N -0.34 -8.53 11.54 31.24 0.36 -8.17 16 20 N -0.16 -3.72 11.30 33.34 0.38 -3.34 16 21 H 0.10 1.30 6.13 -52.49 -0.32 0.98 16 22 H 0.11 1.54 6.08 -52.48 -0.32 1.22 16 23 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 24 H 0.06 0.63 7.64 -51.93 -0.40 0.24 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.13 2.01 6.25 -52.48 -0.33 1.68 16 29 H 0.14 2.65 6.03 -52.49 -0.32 2.33 16 30 H 0.41 10.43 8.01 -40.82 -0.33 10.11 16 31 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -27.70 272.67 -4.84 -32.54 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -3.11 Total: 11.72 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.02 Total: -11.07 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 1.40 Total: -44.76 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.19 Total: -5.61 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.70 -4.84 -32.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534077.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds