Wall clock time and date at job start Sun Mar 29 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33206 * 1 3 3 O 1.35882 * 119.99599 * 2 1 4 4 C 1.42892 * 117.00205 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.47922 * 120.00318 * 180.02562 * 2 1 3 7 7 C 1.40071 * 120.09835 * 359.97438 * 6 2 1 8 8 C 1.38245 * 117.97521 * 179.97438 * 7 6 2 9 9 C 1.39746 * 118.01669 * 0.02562 * 8 7 6 10 10 N 1.38694 * 120.03971 * 179.97438 * 9 8 7 11 11 C 1.36860 * 120.00494 * 0.02562 * 10 9 8 12 12 H 1.08002 * 119.99645 * 359.97438 * 11 10 9 13 13 C 1.38814 * 120.00602 * 180.02562 * 11 10 9 14 14 N 1.31566 * 119.99441 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00281 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47403 * 60.00200 * 15 13 11 17 17 H 1.48505 * 109.47187 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47544 * 299.99935 * 15 13 11 19 19 N 1.32659 * 119.91526 * 359.97438 * 9 8 7 20 20 N 1.28357 * 122.18166 * 0.02562 * 19 9 8 21 21 H 1.08000 * 120.00241 * 359.97438 * 1 2 3 22 22 H 1.08009 * 119.99872 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47225 * 299.99260 * 4 3 2 24 24 H 1.09000 * 109.47163 * 60.00024 * 4 3 2 25 25 H 1.09001 * 109.47443 * 180.02562 * 5 4 3 26 26 H 1.09002 * 109.47150 * 300.00136 * 5 4 3 27 27 H 1.08997 * 109.47272 * 59.99687 * 5 4 3 28 28 H 1.08005 * 121.01508 * 359.96233 * 7 6 2 29 29 H 1.07999 * 120.98986 * 179.72741 * 8 7 6 30 30 H 0.97006 * 119.99879 * 179.97438 * 10 9 8 31 31 H 0.97004 * 119.99835 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3321 0.0000 0.0000 3 8 2.0114 1.1768 0.0000 4 6 1.2331 2.3752 0.0006 5 6 2.1651 3.5886 0.0011 6 6 2.0717 -1.2810 -0.0006 7 6 1.3735 -2.4953 -0.0006 8 6 2.1087 -3.6661 -0.0017 9 6 3.5026 -3.5659 -0.0022 10 7 4.2811 -4.7137 -0.0027 11 6 3.6845 -5.9454 -0.0033 12 1 2.6073 -6.0236 -0.0029 13 6 4.4637 -7.0942 -0.0033 14 7 5.7759 -6.9989 -0.0033 15 14 3.6493 -8.7752 -0.0034 16 1 2.8035 -8.9155 -1.2160 17 1 4.6935 -9.8312 -0.0041 18 1 2.8034 -8.9157 1.2090 19 7 4.0801 -2.3716 -0.0021 20 7 3.3996 -1.2832 -0.0011 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9354 -0.0004 23 1 0.6040 2.4003 -0.8892 24 1 0.6046 2.3998 0.8908 25 1 1.5714 4.5028 0.0020 26 1 2.7939 3.5634 0.8911 27 1 2.7939 3.5642 -0.8888 28 1 0.2937 -2.5163 0.0004 29 1 1.6204 -4.6293 0.0027 30 1 5.2487 -4.6435 -0.0034 31 1 6.3205 -7.8017 -0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534077.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:47 Heat of formation + Delta-G solvation = 18.645890 kcal Electronic energy + Delta-G solvation = -15578.426193 eV Core-core repulsion = 12860.522006 eV Total energy + Delta-G solvation = -2717.904187 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.53006 -40.03126 -37.67987 -34.77325 -34.16509 -32.70916 -31.45839 -30.33626 -27.17288 -25.00137 -24.96029 -23.53497 -20.97858 -20.13697 -18.89130 -18.12731 -17.79898 -16.87484 -16.78469 -16.32598 -15.74837 -15.49065 -15.03071 -14.32654 -13.91920 -13.74785 -13.57794 -13.31544 -13.30529 -12.87296 -12.51917 -12.43529 -12.22835 -12.10427 -11.78150 -11.77756 -10.96644 -10.95183 -10.21845 -9.75881 -8.88221 -8.65164 -5.94517 0.10483 0.28604 1.42973 1.44957 1.55577 1.71355 2.16296 2.33319 2.81437 2.85280 3.25538 3.60969 3.96292 4.12898 4.15257 4.25806 4.28335 4.40797 4.46869 4.74009 4.87048 4.96429 5.01137 5.14264 5.18135 5.27035 5.33999 5.41679 5.58077 5.76785 6.57506 6.73849 7.13159 7.26535 8.26619 8.51973 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.064583 B = 0.004678 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.449106 B = 5984.172935 C = 6397.175869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C 0.141 3.859 3 O -0.340 6.340 4 C 0.046 3.954 5 C -0.149 4.149 6 C -0.039 4.039 7 C -0.046 4.046 8 C -0.198 4.198 9 C 0.275 3.725 10 N -0.523 5.523 11 C -0.330 4.330 12 H 0.124 0.876 13 C -0.018 4.018 14 N -0.913 5.913 15 Si 1.012 2.988 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.258 1.258 19 N -0.384 5.384 20 N -0.199 5.199 21 H 0.132 0.868 22 H 0.129 0.871 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.182 0.818 29 H 0.159 0.841 30 H 0.397 0.603 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 9.369 0.013 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 C 0.094 3.906 3 O -0.255 6.255 4 C -0.028 4.028 5 C -0.206 4.206 6 C -0.191 4.191 7 C -0.073 4.073 8 C -0.231 4.231 9 C 0.028 3.972 10 N -0.129 5.129 11 C -0.460 4.460 12 H 0.142 0.858 13 C -0.221 4.221 14 N -0.549 5.549 15 Si 0.833 3.167 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.183 1.183 19 N -0.244 5.244 20 N -0.044 5.044 21 H 0.150 0.850 22 H 0.147 0.853 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.199 0.801 29 H 0.176 0.824 30 H 0.231 0.769 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.034 9.720 0.013 14.704 hybrid contribution -0.617 -1.520 0.000 1.641 sum -11.650 8.200 0.013 14.247 Atomic orbital electron populations 1.24310 0.92141 1.05019 1.13041 1.19034 0.90730 0.82837 0.97960 1.86080 1.37872 1.12993 1.88535 1.23042 0.95041 0.82481 1.02272 1.21802 1.00194 0.95900 1.02705 1.20721 0.91680 0.93032 1.13655 1.22161 1.02270 0.89497 0.93355 1.21746 0.91929 1.00810 1.08644 1.20334 0.91103 0.88495 0.97284 1.40846 1.08099 1.02166 1.61744 1.20258 0.94892 0.81417 1.49408 0.85835 1.26489 0.95818 1.04424 0.95324 1.69812 1.05608 1.32758 1.46734 0.84684 0.77666 0.74402 0.79905 1.18289 1.20611 1.18277 1.72806 1.30833 0.94270 1.26526 1.72734 1.07374 1.19372 1.04941 0.85015 0.85330 0.90938 0.90945 0.87634 0.92519 0.92513 0.80098 0.82375 0.76925 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.39 13.19 66.68 0.88 -6.51 16 2 C 0.14 4.71 6.85 23.70 0.16 4.87 16 3 O -0.34 -11.41 10.00 -92.22 -0.92 -12.33 16 4 C 0.05 1.00 5.45 71.98 0.39 1.39 16 5 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 6 C -0.04 -1.58 6.83 42.01 0.29 -1.30 16 7 C -0.05 -1.62 9.51 22.72 0.22 -1.40 16 8 C -0.20 -8.01 9.40 22.64 0.21 -7.80 16 9 C 0.28 13.44 7.71 133.24 1.03 14.46 16 10 N -0.52 -26.91 5.43 -188.83 -1.03 -27.93 16 11 C -0.33 -16.18 9.55 84.05 0.80 -15.38 16 12 H 0.12 5.43 5.69 -2.91 -0.02 5.41 16 13 C -0.02 -0.87 5.50 84.87 0.47 -0.41 16 14 N -0.91 -47.95 13.05 21.65 0.28 -47.67 16 15 Si 1.01 37.24 29.55 68.60 2.03 39.27 16 16 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 17 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 N -0.38 -19.77 11.54 -55.06 -0.64 -20.41 16 20 N -0.20 -9.65 11.30 -48.44 -0.55 -10.19 16 21 H 0.13 2.48 6.13 -2.91 -0.02 2.46 16 22 H 0.13 2.66 6.08 -2.91 -0.02 2.64 16 23 H 0.07 1.32 7.64 -2.39 -0.02 1.30 16 24 H 0.07 1.32 7.64 -2.39 -0.02 1.30 16 25 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.18 4.44 6.25 -2.91 -0.02 4.43 16 29 H 0.16 5.70 6.03 -2.91 -0.02 5.68 16 30 H 0.40 21.67 8.01 -92.70 -0.74 20.93 16 31 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -63.65 272.67 4.79 -58.86 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.42 Total: 34.46 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.19 Total: -14.04 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -1.93 Total: -106.21 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.92 Total: -12.33 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -63.65 4.79 -58.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534077.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.503 kcal (2) G-P(sol) polarization free energy of solvation -63.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds