Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47022 * 2 1 4 4 C 1.34777 * 119.99860 * 180.27627 * 3 2 1 5 5 O 1.21592 * 120.00201 * 359.72056 * 4 3 2 6 6 C 1.47548 * 119.99861 * 179.72507 * 4 3 2 7 7 C 1.40355 * 120.47201 * 179.97438 * 6 4 3 8 8 C 1.36874 * 118.49264 * 180.02562 * 7 6 4 9 9 C 1.39463 * 119.37194 * 359.97438 * 8 7 6 10 10 N 1.38372 * 119.53949 * 180.02562 * 9 8 7 11 11 C 1.36839 * 120.00251 * 354.25476 * 10 9 8 12 12 H 1.08001 * 119.99949 * 5.13605 * 11 10 9 13 13 C 1.38898 * 120.00006 * 185.13045 * 11 10 9 14 14 N 1.31507 * 119.99484 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00256 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46775 * 60.00487 * 15 13 11 17 17 H 1.48501 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46957 * 300.00528 * 15 13 11 19 19 N 1.32682 * 120.91191 * 359.97438 * 9 8 7 20 20 C 1.31607 * 121.64098 * 359.74061 * 19 9 8 21 21 H 1.09000 * 109.47128 * 60.00031 * 1 2 3 22 22 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47422 * 300.00346 * 1 2 3 24 24 H 1.08994 * 109.47172 * 240.00026 * 2 1 3 25 25 H 1.09000 * 109.47128 * 119.99969 * 2 1 3 26 26 H 0.96999 * 119.99899 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.75020 * 359.97438 * 7 6 4 28 28 H 1.08001 * 120.31273 * 179.97438 * 8 7 6 29 29 H 0.97003 * 119.99431 * 174.24764 * 10 9 8 30 30 H 0.97001 * 119.99520 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.74167 * 180.26638 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0056 5 8 4.1335 0.7033 -0.0056 6 6 3.8351 3.0186 -0.0118 7 6 5.2129 3.2864 -0.0171 8 6 5.6242 4.5919 -0.0222 9 6 4.6707 5.6096 -0.0224 10 7 5.0827 6.9305 -0.0280 11 6 6.4124 7.2330 0.0853 12 1 7.1472 6.4417 0.0956 13 6 6.8170 8.5579 0.1869 14 7 5.9221 9.5214 0.1747 15 14 8.6321 8.9709 0.3424 16 1 9.3588 8.4643 -0.8495 17 1 8.7985 10.4436 0.4352 18 1 9.1819 8.3330 1.5655 19 7 3.3739 5.3286 -0.0183 20 6 2.9365 4.0874 -0.0190 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.3879 2.1185 0.0004 27 1 5.9321 2.4807 -0.0164 28 1 6.6773 4.8316 -0.0259 29 1 4.4288 7.6421 -0.1124 30 1 6.2046 10.4466 0.2461 31 1 1.8739 3.8938 -0.0199 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -7.653862 kcal Electronic energy + Delta-G solvation = -15565.263218 eV Core-core repulsion = 12846.218589 eV Total energy + Delta-G solvation = -2719.044630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65871 -38.39467 -35.48117 -34.95079 -32.32836 -31.41720 -30.68221 -28.42872 -25.42260 -23.29476 -22.66127 -21.80102 -20.06656 -18.16171 -17.36285 -16.55351 -15.96489 -15.25654 -15.05413 -14.72883 -14.07659 -13.76719 -13.63402 -13.14344 -13.04955 -12.58237 -12.10148 -12.04550 -11.81091 -11.55557 -11.50510 -11.41294 -10.70368 -10.61878 -10.45695 -9.44246 -9.09291 -8.91764 -8.77279 -8.44441 -7.17478 -6.91300 -4.08238 1.77926 2.41125 2.99835 3.01511 3.03626 3.61684 3.64834 3.78576 4.58060 4.67314 4.97535 5.05747 5.11914 5.28692 5.39114 5.59144 5.77979 5.82834 5.90872 6.03032 6.18639 6.36543 6.61054 6.77303 6.90927 6.96359 7.20662 7.37655 7.70448 7.96444 8.31066 8.68379 8.81400 9.00641 9.40420 10.23022 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.063078 B = 0.004669 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.785666 B = 5995.323408 C = 6413.519851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.742 5.742 4 C 0.579 3.421 5 O -0.570 6.570 6 C -0.342 4.342 7 C 0.024 3.976 8 C -0.261 4.261 9 C 0.359 3.641 10 N -0.501 5.501 11 C -0.306 4.306 12 H 0.111 0.889 13 C 0.029 3.971 14 N -0.869 5.869 15 Si 0.941 3.059 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.267 1.267 19 N -0.577 5.577 20 C 0.204 3.796 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.396 0.604 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.406 0.594 30 H 0.283 0.717 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -8.815 -0.244 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.396 5.396 4 C 0.371 3.629 5 O -0.451 6.451 6 C -0.355 4.355 7 C -0.001 4.001 8 C -0.287 4.287 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.437 4.437 12 H 0.129 0.871 13 C -0.178 4.178 14 N -0.502 5.502 15 Si 0.766 3.234 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.192 1.192 19 N -0.298 5.298 20 C 0.034 3.966 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.242 0.758 30 H 0.093 0.907 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.921 -8.234 -0.211 10.144 hybrid contribution 0.717 0.301 0.045 0.779 sum -5.204 -7.933 -0.166 9.489 Atomic orbital electron populations 1.22005 0.94943 1.02769 1.02488 1.21161 0.93674 0.83896 1.01911 1.45936 1.07507 1.08037 1.78071 1.18184 0.81218 0.89019 0.74451 1.90667 1.55498 1.46514 1.52419 1.19736 0.95149 0.92098 1.28550 1.20732 0.94070 0.95667 0.89669 1.20808 0.99897 0.91929 1.16080 1.18361 0.88606 0.86017 0.95686 1.40934 1.08545 1.02921 1.57756 1.19916 0.82568 0.93552 1.47634 0.87094 1.25525 1.01399 0.94992 0.95906 1.69669 1.34998 1.01158 1.44413 0.85732 0.80145 0.77897 0.79613 1.19198 1.20341 1.19188 1.67059 1.15172 1.22203 1.25348 1.22092 0.97631 0.86971 0.89863 0.92044 0.91200 0.92030 0.92023 0.92019 0.76879 0.86071 0.85587 0.75815 0.90654 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.03 37.16 0.37 -0.93 16 2 C 0.12 1.36 6.39 -4.04 -0.03 1.34 16 3 N -0.74 -10.24 5.51 -61.35 -0.34 -10.58 16 4 C 0.58 10.59 7.77 -12.46 -0.10 10.49 16 5 O -0.57 -12.18 16.41 5.28 0.09 -12.10 16 6 C -0.34 -6.61 5.89 -104.78 -0.62 -7.22 16 7 C 0.02 0.49 9.65 -39.28 -0.38 0.11 16 8 C -0.26 -5.63 9.26 -39.62 -0.37 -5.99 16 9 C 0.36 8.28 7.60 -155.27 -1.18 7.10 16 10 N -0.50 -12.19 5.41 -11.16 -0.06 -12.25 16 11 C -0.31 -7.45 9.53 -15.07 -0.14 -7.59 16 12 H 0.11 2.55 5.64 -52.49 -0.30 2.26 16 13 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 14 N -0.87 -21.82 13.06 55.49 0.72 -21.09 16 15 Si 0.94 18.43 29.55 -169.99 -5.02 13.41 16 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 N -0.58 -12.53 10.39 -12.12 -0.13 -12.65 16 20 C 0.20 3.78 10.71 -17.12 -0.18 3.59 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.40 4.50 6.52 -40.82 -0.27 4.23 16 27 H 0.12 2.34 7.73 -52.48 -0.41 1.93 16 28 H 0.13 2.62 5.93 -52.49 -0.31 2.31 16 29 H 0.41 10.14 8.02 -40.82 -0.33 9.81 16 30 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.13 1.90 6.41 -52.48 -0.34 1.57 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -28.45 273.26 -6.53 -34.98 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -3.19 Total: 14.68 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.72 Total: 1.49 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.20 Total: -56.58 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.45 -6.53 -34.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.326 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds