Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47022 * 2 1 4 4 C 1.34777 * 119.99860 * 180.27627 * 3 2 1 5 5 O 1.21592 * 120.00201 * 359.72056 * 4 3 2 6 6 C 1.47548 * 119.99861 * 179.72507 * 4 3 2 7 7 C 1.40355 * 120.47201 * 179.97438 * 6 4 3 8 8 C 1.36874 * 118.49264 * 180.02562 * 7 6 4 9 9 C 1.39463 * 119.37194 * 359.97438 * 8 7 6 10 10 N 1.38372 * 119.53949 * 180.02562 * 9 8 7 11 11 C 1.36839 * 120.00251 * 354.25476 * 10 9 8 12 12 H 1.08001 * 119.99949 * 5.13605 * 11 10 9 13 13 C 1.38898 * 120.00006 * 185.13045 * 11 10 9 14 14 N 1.31507 * 119.99484 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00256 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46775 * 60.00487 * 15 13 11 17 17 H 1.48501 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46957 * 300.00528 * 15 13 11 19 19 N 1.32682 * 120.91191 * 359.97438 * 9 8 7 20 20 C 1.31607 * 121.64098 * 359.74061 * 19 9 8 21 21 H 1.09000 * 109.47128 * 60.00031 * 1 2 3 22 22 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47422 * 300.00346 * 1 2 3 24 24 H 1.08994 * 109.47172 * 240.00026 * 2 1 3 25 25 H 1.09000 * 109.47128 * 119.99969 * 2 1 3 26 26 H 0.96999 * 119.99899 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.75020 * 359.97438 * 7 6 4 28 28 H 1.08001 * 120.31273 * 179.97438 * 8 7 6 29 29 H 0.97003 * 119.99431 * 174.24764 * 10 9 8 30 30 H 0.97001 * 119.99520 * 179.97438 * 14 13 11 31 31 H 1.08004 * 119.74167 * 180.26638 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0056 5 8 4.1335 0.7033 -0.0056 6 6 3.8351 3.0186 -0.0118 7 6 5.2129 3.2864 -0.0171 8 6 5.6242 4.5919 -0.0222 9 6 4.6707 5.6096 -0.0224 10 7 5.0827 6.9305 -0.0280 11 6 6.4124 7.2330 0.0853 12 1 7.1472 6.4417 0.0956 13 6 6.8170 8.5579 0.1869 14 7 5.9221 9.5214 0.1747 15 14 8.6321 8.9709 0.3424 16 1 9.3588 8.4643 -0.8495 17 1 8.7985 10.4436 0.4352 18 1 9.1819 8.3330 1.5655 19 7 3.3739 5.3286 -0.0183 20 6 2.9365 4.0874 -0.0190 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.3879 2.1185 0.0004 27 1 5.9321 2.4807 -0.0164 28 1 6.6773 4.8316 -0.0259 29 1 4.4288 7.6421 -0.1124 30 1 6.2046 10.4466 0.2461 31 1 1.8739 3.8938 -0.0199 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -26.920622 kcal Electronic energy + Delta-G solvation = -15566.098688 eV Core-core repulsion = 12846.218589 eV Total energy + Delta-G solvation = -2719.880099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24573 -39.93878 -37.17771 -36.17947 -34.04772 -33.09950 -31.88053 -29.88336 -27.14584 -24.55709 -24.29234 -23.10376 -21.54685 -19.88342 -18.93727 -18.10925 -17.46759 -16.63393 -16.38166 -16.24867 -15.59701 -15.30120 -15.14964 -14.66401 -14.53284 -13.82365 -13.66948 -13.31021 -13.13210 -13.07826 -12.59030 -12.43636 -12.31505 -12.15647 -12.09012 -10.99334 -10.80099 -10.61821 -10.10577 -10.01403 -8.88328 -8.65804 -5.92609 0.16902 0.74610 1.42190 1.47440 1.53578 2.10025 2.18023 2.40805 2.87443 2.98041 3.39932 3.81245 4.13066 4.18373 4.28388 4.30588 4.51435 4.59354 4.66118 4.98832 5.03025 5.13328 5.20367 5.22440 5.32722 5.52980 5.61621 5.67156 6.03230 6.54618 6.70521 6.96725 7.24029 7.40810 7.66051 8.50624 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.063078 B = 0.004669 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.785666 B = 5995.323408 C = 6413.519851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.723 5.723 4 C 0.579 3.421 5 O -0.603 6.603 6 C -0.336 4.336 7 C 0.022 3.978 8 C -0.274 4.274 9 C 0.354 3.646 10 N -0.526 5.526 11 C -0.330 4.330 12 H 0.116 0.884 13 C -0.015 4.015 14 N -0.910 5.910 15 Si 1.007 2.993 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.594 5.594 20 C 0.209 3.791 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.411 0.589 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.396 0.604 30 H 0.284 0.716 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -10.495 -0.202 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 N -0.376 5.376 4 C 0.369 3.631 5 O -0.486 6.486 6 C -0.348 4.348 7 C -0.003 4.003 8 C -0.300 4.300 9 C 0.110 3.890 10 N -0.128 5.128 11 C -0.460 4.460 12 H 0.134 0.866 13 C -0.217 4.217 14 N -0.545 5.545 15 Si 0.828 3.172 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.187 1.187 19 N -0.315 5.315 20 C 0.041 3.959 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.248 0.752 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.231 0.769 30 H 0.093 0.907 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.146 -9.974 -0.170 12.271 hybrid contribution 0.860 0.476 0.021 0.983 sum -6.286 -9.497 -0.149 11.390 Atomic orbital electron populations 1.21962 0.91662 1.04267 1.03344 1.21378 0.96307 0.82135 1.01329 1.45846 1.06107 1.09850 1.75765 1.18049 0.82556 0.87947 0.74498 1.90663 1.56783 1.47116 1.54015 1.20071 0.95004 0.93348 1.26403 1.20949 0.95141 0.95366 0.88866 1.20888 0.99979 0.92200 1.16944 1.18720 0.89538 0.86057 0.94676 1.40930 1.08387 1.02970 1.60505 1.20200 0.82892 0.94170 1.48705 0.86629 1.26398 1.05320 0.94588 0.95429 1.69764 1.36750 1.01388 1.46631 0.84764 0.75230 0.77502 0.79681 1.18562 1.20188 1.18733 1.67160 1.14590 1.23755 1.25990 1.22790 0.99757 0.85570 0.87769 0.91151 0.89462 0.91160 0.92652 0.92665 0.75181 0.85168 0.85433 0.76909 0.90665 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.03 71.98 0.72 -1.12 16 2 C 0.11 2.26 6.39 86.38 0.55 2.81 16 3 N -0.72 -17.52 5.51 -466.26 -2.57 -20.08 16 4 C 0.58 19.73 7.77 86.70 0.67 20.40 16 5 O -0.60 -24.73 16.41 -4.00 -0.07 -24.80 16 6 C -0.34 -12.25 5.89 -19.97 -0.12 -12.37 16 7 C 0.02 0.88 9.65 22.47 0.22 1.10 16 8 C -0.27 -11.79 9.26 22.25 0.21 -11.58 16 9 C 0.35 16.41 7.60 133.27 1.01 17.42 16 10 N -0.53 -26.29 5.41 -189.24 -1.02 -27.32 16 11 C -0.33 -16.47 9.53 84.07 0.80 -15.67 16 12 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 13 C -0.01 -0.72 5.50 84.90 0.47 -0.25 16 14 N -0.91 -47.13 13.06 21.66 0.28 -46.85 16 15 Si 1.01 38.20 29.55 68.60 2.03 40.22 16 16 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 17 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 19 N -0.59 -25.16 10.39 -192.26 -2.00 -27.16 16 20 C 0.21 7.18 10.71 85.07 0.91 8.09 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.41 7.54 6.52 -92.71 -0.60 6.94 16 27 H 0.13 4.90 7.73 -2.91 -0.02 4.87 16 28 H 0.13 5.37 5.93 -2.91 -0.02 5.36 16 29 H 0.40 20.64 8.02 -92.71 -0.74 19.89 16 30 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.18 4.35 6.41 -2.91 -0.02 4.33 16 Total: -1.00 -62.05 273.26 1.93 -60.12 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.17 Total: 37.04 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.44 Total: 8.83 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -5.31 Total: -121.41 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.07 Total: -24.80 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Total: -62.05 1.93 -60.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.199 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds