Wall clock time and date at job start Sun Mar 29 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99699 * 2 1 4 4 H 1.09003 * 109.47564 * 5.00076 * 3 2 1 5 5 C 1.53006 * 109.47300 * 125.00209 * 3 2 1 6 6 O 1.42897 * 109.46960 * 54.99326 * 5 3 2 7 7 N 1.46507 * 109.47009 * 244.99906 * 3 2 1 8 8 C 1.38821 * 120.00171 * 85.00063 * 7 3 2 9 9 C 1.39965 * 119.96892 * 359.97438 * 8 7 3 10 10 N 1.32126 * 120.31908 * 180.02562 * 9 8 7 11 11 C 1.31933 * 120.27042 * 359.65399 * 10 9 8 12 12 C 1.40682 * 119.93041 * 0.62509 * 11 10 9 13 13 C 1.41269 * 120.15272 * 179.68278 * 12 11 10 14 14 H 1.08001 * 120.00803 * 6.16351 * 13 12 11 15 15 C 1.40054 * 119.99933 * 186.16640 * 13 12 11 16 16 N 1.30738 * 120.00325 * 176.74440 * 15 13 12 17 17 Si 1.86797 * 119.99891 * 356.74772 * 15 13 12 18 18 H 1.48502 * 109.47307 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46923 * 299.99731 * 17 15 13 20 20 H 1.48494 * 109.47455 * 59.99895 * 17 15 13 21 21 N 1.32230 * 119.97361 * 180.02562 * 8 7 3 22 22 H 1.07999 * 119.99838 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00329 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00329 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47297 * 175.00011 * 5 3 2 26 26 H 1.08999 * 109.46557 * 294.99958 * 5 3 2 27 27 H 0.96699 * 113.99925 * 179.97438 * 6 5 3 28 28 H 0.97001 * 119.99904 * 265.00109 * 7 3 2 29 29 H 1.08005 * 119.84331 * 0.02562 * 9 8 7 30 30 H 1.08003 * 120.03595 * 180.29933 * 11 10 9 31 31 H 0.96999 * 119.99762 * 355.08421 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0351 1.3332 1.1816 6 8 3.8841 0.1850 1.1275 7 7 2.8132 1.4362 -1.2519 8 6 2.1918 1.9480 -2.3828 9 6 0.8488 2.3382 -2.3265 10 7 0.2503 2.8257 -3.3989 11 6 0.9158 2.9554 -4.5307 12 6 2.2644 2.5612 -4.6012 13 6 2.9795 2.6918 -5.8125 14 1 2.5239 3.1854 -6.6582 15 6 4.2793 2.1809 -5.9169 16 7 4.9173 2.2448 -7.0562 17 14 5.1014 1.4081 -4.4282 18 1 6.4638 0.9475 -4.7985 19 1 5.1971 2.4125 -3.3386 20 1 4.2969 0.2495 -3.9641 21 7 2.8688 2.0656 -3.5125 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8501 -0.9353 0.0004 25 1 3.6423 2.2369 1.1313 26 1 2.4722 1.3251 2.1150 27 1 4.5274 0.1373 1.8478 28 1 3.7438 1.1653 -1.2905 29 1 0.2989 2.2402 -1.4021 30 1 0.4242 3.3589 -5.4036 31 1 4.4661 2.5805 -7.8466 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158818298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:35 Heat of formation + Delta-G solvation = 1.693435 kcal Electronic energy + Delta-G solvation = -16377.037098 eV Core-core repulsion = 13658.397797 eV Total energy + Delta-G solvation = -2718.639301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48472 -37.86492 -35.51137 -34.08442 -33.18575 -31.84585 -29.79464 -27.63839 -25.79769 -22.92403 -22.72944 -21.04148 -19.72865 -18.43397 -17.51568 -16.75112 -16.23887 -15.39037 -14.90709 -14.76306 -14.36106 -13.90888 -13.50466 -13.11960 -12.85831 -12.42603 -12.39084 -11.64595 -11.39425 -11.12642 -11.01527 -10.99225 -10.22145 -10.06250 -9.84003 -9.39166 -9.31547 -9.08650 -8.84519 -7.71437 -7.16380 -7.01501 -4.90785 2.36014 2.52869 2.79145 3.55536 3.67449 3.79198 4.01833 4.17068 4.37984 4.64011 4.84214 5.00544 5.20767 5.35085 5.46632 5.55302 5.75177 5.84996 6.00272 6.09932 6.22575 6.53709 6.75816 6.80105 6.87445 7.29990 7.33850 7.48292 7.63017 7.86071 8.10118 8.30088 8.54603 9.03763 9.49790 9.89287 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.009186 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.118429 B = 3047.332775 C = 3857.000157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.189 3.811 4 H 0.095 0.905 5 C 0.073 3.927 6 O -0.566 6.566 7 N -0.720 5.720 8 C 0.405 3.595 9 C -0.168 4.168 10 N -0.395 5.395 11 C -0.094 4.094 12 C 0.238 3.762 13 C -0.454 4.454 14 H 0.089 0.911 15 C 0.043 3.957 16 N -0.795 5.795 17 Si 1.159 2.841 18 H -0.333 1.333 19 H -0.288 1.288 20 H -0.289 1.289 21 N -0.598 5.598 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.378 0.622 28 H 0.400 0.600 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -2.572 14.504 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.177 4.177 3 C 0.083 3.917 4 H 0.113 0.887 5 C -0.006 4.006 6 O -0.371 6.371 7 N -0.355 5.355 8 C 0.164 3.836 9 C -0.328 4.328 10 N -0.106 5.106 11 C -0.265 4.265 12 C 0.113 3.887 13 C -0.487 4.487 14 H 0.107 0.893 15 C -0.180 4.180 16 N -0.416 5.416 17 Si 0.995 3.005 18 H -0.267 1.267 19 H -0.216 1.216 20 H -0.217 1.217 21 N -0.331 5.331 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.225 0.775 28 H 0.236 0.764 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.093 -3.268 14.505 14.908 hybrid contribution -0.893 0.751 -0.314 1.209 sum -1.986 -2.516 14.190 14.548 Atomic orbital electron populations 1.23845 0.95837 1.01780 1.00508 1.23274 0.95802 0.99101 0.99528 1.20069 0.92629 0.95882 0.83169 0.88727 1.22458 0.92403 0.88454 0.97273 1.86538 1.51447 1.45320 1.53804 1.44244 1.13893 1.70239 1.07170 1.19125 0.90044 0.88055 0.86331 1.21894 0.92476 1.19819 0.98600 1.67517 1.37371 1.06726 0.98988 1.22789 0.93580 1.13892 0.96247 1.19148 0.91161 0.87693 0.90684 1.20801 1.00349 1.30726 0.96862 0.89335 1.27875 0.94601 0.92192 1.03312 1.70648 1.39140 1.30683 1.01123 0.81711 0.70818 0.77066 0.70887 1.26692 1.21629 1.21701 1.66643 1.36182 1.30623 0.99618 0.88591 0.88472 0.86923 0.92668 0.92274 0.77537 0.76398 0.85324 0.84736 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 13.77 29.01 0.40 -1.97 16 2 C -0.16 -2.23 8.61 -36.03 -0.31 -2.54 16 3 C 0.19 2.70 2.49 -69.08 -0.17 2.53 16 4 H 0.10 1.31 6.11 -51.93 -0.32 0.99 16 5 C 0.07 0.78 6.78 37.16 0.25 1.03 16 6 O -0.57 -6.23 12.74 -35.23 -0.45 -6.68 16 7 N -0.72 -13.60 5.21 -54.91 -0.29 -13.89 16 8 C 0.41 9.37 7.64 -155.03 -1.18 8.19 16 9 C -0.17 -3.78 10.33 -16.78 -0.17 -3.95 16 10 N -0.40 -9.64 10.47 -12.11 -0.13 -9.77 16 11 C -0.09 -2.37 10.97 -16.59 -0.18 -2.56 16 12 C 0.24 6.39 6.41 -84.84 -0.54 5.85 16 13 C -0.45 -12.34 9.59 -37.75 -0.36 -12.71 16 14 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 15 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 16 N -0.79 -21.44 13.65 55.55 0.76 -20.68 16 17 Si 1.16 28.84 25.46 -169.99 -4.33 24.52 16 18 H -0.33 -8.17 7.11 56.52 0.40 -7.76 16 19 H -0.29 -7.13 6.95 56.52 0.39 -6.74 16 20 H -0.29 -7.34 6.94 56.52 0.39 -6.95 16 21 N -0.60 -15.57 4.76 -10.15 -0.05 -15.62 16 22 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 23 H 0.10 1.22 6.94 -52.49 -0.36 0.85 16 24 H 0.11 1.66 7.86 -52.49 -0.41 1.25 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.38 2.29 9.12 45.56 0.42 2.70 16 28 H 0.40 7.65 8.51 -40.82 -0.35 7.30 16 29 H 0.13 2.50 4.70 -52.48 -0.25 2.26 16 30 H 0.14 3.13 8.06 -52.48 -0.42 2.71 16 31 H 0.29 7.30 8.72 -40.82 -0.36 6.95 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -31.39 267.78 -5.37 -36.77 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -2.56 Total: 6.39 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.37 Total: -5.06 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.30 Total: -59.97 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.45 Total: -6.68 kcal Atomic # 14 Polarization: 28.84 SS G_CDS: -4.33 Total: 24.52 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.39 -5.37 -36.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158818298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.459 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds