Wall clock time and date at job start Sun Mar 29 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99699 * 2 1 4 4 H 1.09003 * 109.47564 * 5.00076 * 3 2 1 5 5 C 1.53006 * 109.47300 * 125.00209 * 3 2 1 6 6 O 1.42897 * 109.46960 * 54.99326 * 5 3 2 7 7 N 1.46507 * 109.47009 * 244.99906 * 3 2 1 8 8 C 1.38821 * 120.00171 * 85.00063 * 7 3 2 9 9 C 1.39965 * 119.96892 * 359.97438 * 8 7 3 10 10 N 1.32126 * 120.31908 * 180.02562 * 9 8 7 11 11 C 1.31933 * 120.27042 * 359.65399 * 10 9 8 12 12 C 1.40682 * 119.93041 * 0.62509 * 11 10 9 13 13 C 1.41269 * 120.15272 * 179.68278 * 12 11 10 14 14 H 1.08001 * 120.00803 * 6.16351 * 13 12 11 15 15 C 1.40054 * 119.99933 * 186.16640 * 13 12 11 16 16 N 1.30738 * 120.00325 * 176.74440 * 15 13 12 17 17 Si 1.86797 * 119.99891 * 356.74772 * 15 13 12 18 18 H 1.48502 * 109.47307 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46923 * 299.99731 * 17 15 13 20 20 H 1.48494 * 109.47455 * 59.99895 * 17 15 13 21 21 N 1.32230 * 119.97361 * 180.02562 * 8 7 3 22 22 H 1.07999 * 119.99838 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00329 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00329 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47297 * 175.00011 * 5 3 2 26 26 H 1.08999 * 109.46557 * 294.99958 * 5 3 2 27 27 H 0.96699 * 113.99925 * 179.97438 * 6 5 3 28 28 H 0.97001 * 119.99904 * 265.00109 * 7 3 2 29 29 H 1.08005 * 119.84331 * 0.02562 * 9 8 7 30 30 H 1.08003 * 120.03595 * 180.29933 * 11 10 9 31 31 H 0.96999 * 119.99762 * 355.08421 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0351 1.3332 1.1816 6 8 3.8841 0.1850 1.1275 7 7 2.8132 1.4362 -1.2519 8 6 2.1918 1.9480 -2.3828 9 6 0.8488 2.3382 -2.3265 10 7 0.2503 2.8257 -3.3989 11 6 0.9158 2.9554 -4.5307 12 6 2.2644 2.5612 -4.6012 13 6 2.9795 2.6918 -5.8125 14 1 2.5239 3.1854 -6.6582 15 6 4.2793 2.1809 -5.9169 16 7 4.9173 2.2448 -7.0562 17 14 5.1014 1.4081 -4.4282 18 1 6.4638 0.9475 -4.7985 19 1 5.1971 2.4125 -3.3386 20 1 4.2969 0.2495 -3.9641 21 7 2.8688 2.0656 -3.5125 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8501 -0.9353 0.0004 25 1 3.6423 2.2369 1.1313 26 1 2.4722 1.3251 2.1150 27 1 4.5274 0.1373 1.8478 28 1 3.7438 1.1653 -1.2905 29 1 0.2989 2.2402 -1.4021 30 1 0.4242 3.3589 -5.4036 31 1 4.4661 2.5805 -7.8466 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158818298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:34 Heat of formation + Delta-G solvation = -22.359191 kcal Electronic energy + Delta-G solvation = -16378.080098 eV Core-core repulsion = 13658.397797 eV Total energy + Delta-G solvation = -2719.682301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30000 -39.01634 -36.68206 -36.02334 -34.76174 -33.54181 -31.35144 -28.92381 -27.72103 -24.63776 -24.06093 -22.72165 -21.02625 -20.29490 -18.64219 -18.27354 -17.77001 -17.10789 -16.35158 -16.02875 -15.75533 -15.46063 -15.12441 -14.94536 -14.43596 -14.06849 -13.56491 -13.16448 -13.03190 -12.96107 -12.59046 -12.35103 -11.86308 -11.73680 -11.36983 -11.04294 -10.93694 -10.70455 -10.37461 -9.73239 -9.13867 -8.74346 -6.93524 0.56786 0.85529 1.29165 1.55190 1.68745 1.97431 2.37179 2.45264 2.63634 3.38975 3.56049 3.83892 3.95669 4.03636 4.13059 4.27676 4.33573 4.56812 4.61054 4.75546 4.82379 4.90951 5.10707 5.29894 5.41839 5.70994 5.74870 5.83274 5.97311 6.30844 6.39067 6.70875 6.95635 7.13904 7.58135 7.85768 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.009186 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.118429 B = 3047.332775 C = 3857.000157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.173 4.173 3 C 0.177 3.823 4 H 0.104 0.896 5 C 0.079 3.921 6 O -0.587 6.587 7 N -0.711 5.711 8 C 0.397 3.603 9 C -0.149 4.149 10 N -0.400 5.400 11 C -0.119 4.119 12 C 0.229 3.771 13 C -0.483 4.483 14 H 0.081 0.919 15 C 0.019 3.981 16 N -0.814 5.814 17 Si 1.194 2.806 18 H -0.329 1.329 19 H -0.288 1.288 20 H -0.299 1.299 21 N -0.618 5.618 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.399 0.601 28 H 0.399 0.601 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 -2.955 17.219 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C 0.073 3.927 4 H 0.122 0.878 5 C 0.001 3.999 6 O -0.396 6.396 7 N -0.345 5.345 8 C 0.154 3.846 9 C -0.312 4.312 10 N -0.111 5.111 11 C -0.286 4.286 12 C 0.103 3.897 13 C -0.517 4.517 14 H 0.099 0.901 15 C -0.201 4.201 16 N -0.436 5.436 17 Si 1.029 2.971 18 H -0.263 1.263 19 H -0.216 1.216 20 H -0.228 1.228 21 N -0.352 5.352 22 H 0.127 0.873 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.249 0.751 28 H 0.234 0.766 29 H 0.182 0.818 30 H 0.162 0.838 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.756 -3.647 17.237 17.706 hybrid contribution -0.822 0.812 -0.894 1.461 sum -2.578 -2.836 16.343 16.786 Atomic orbital electron populations 1.24062 0.95533 1.02853 0.98557 1.23190 0.96178 0.98619 1.01273 1.20495 0.93644 0.96293 0.82296 0.87819 1.22405 0.92239 0.88576 0.96707 1.86480 1.52274 1.45421 1.55415 1.44555 1.14103 1.68487 1.07321 1.19497 0.90574 0.87795 0.86707 1.22520 0.92444 1.17069 0.99174 1.67580 1.37449 1.06859 0.99171 1.22872 0.93329 1.15266 0.97173 1.19283 0.91825 0.87772 0.90868 1.20798 1.00983 1.32551 0.97328 0.90131 1.28468 0.95018 0.92312 1.04265 1.70649 1.39416 1.32179 1.01375 0.81218 0.70266 0.76096 0.69519 1.26284 1.21647 1.22781 1.66611 1.37051 1.31094 1.00422 0.87342 0.87635 0.87790 0.92143 0.89103 0.75051 0.76573 0.81812 0.83834 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 13.77 67.78 0.93 -2.93 16 2 C -0.17 -4.36 8.61 25.64 0.22 -4.14 16 3 C 0.18 4.47 2.49 44.25 0.11 4.58 16 4 H 0.10 2.42 6.11 -2.39 -0.01 2.41 16 5 C 0.08 1.40 6.78 71.98 0.49 1.89 16 6 O -0.59 -11.15 12.74 -148.98 -1.90 -13.05 16 7 N -0.71 -25.11 5.21 -327.64 -1.71 -26.81 16 8 C 0.40 17.55 7.64 133.38 1.02 18.57 16 9 C -0.15 -6.32 10.33 85.07 0.88 -5.44 16 10 N -0.40 -18.76 10.47 -192.22 -2.01 -20.77 16 11 C -0.12 -5.95 10.97 85.27 0.94 -5.01 16 12 C 0.23 12.29 6.41 40.15 0.26 12.55 16 13 C -0.48 -26.83 9.59 23.46 0.22 -26.60 16 14 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 15 C 0.02 1.02 5.52 85.30 0.47 1.49 16 16 N -0.81 -44.62 13.65 21.84 0.30 -44.32 16 17 Si 1.19 58.87 25.46 68.60 1.75 60.62 16 18 H -0.33 -15.78 7.11 99.48 0.71 -15.08 16 19 H -0.29 -14.01 6.95 99.48 0.69 -13.32 16 20 H -0.30 -15.04 6.94 99.48 0.69 -14.35 16 21 N -0.62 -31.70 4.76 -186.01 -0.88 -32.59 16 22 H 0.11 2.16 8.06 -2.91 -0.02 2.13 16 23 H 0.11 2.19 6.94 -2.91 -0.02 2.17 16 24 H 0.10 2.82 7.86 -2.91 -0.02 2.80 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.40 3.59 9.12 -74.06 -0.68 2.91 16 28 H 0.40 14.43 8.51 -92.71 -0.79 13.64 16 29 H 0.16 5.67 4.70 -2.91 -0.01 5.66 16 30 H 0.14 6.73 8.06 -2.91 -0.02 6.70 16 31 H 0.29 15.04 8.72 -92.71 -0.81 14.23 16 Total: -1.00 -66.31 267.78 0.72 -65.59 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.37 Total: 16.38 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.54 Total: -5.05 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -4.30 Total: -124.49 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.90 Total: -13.05 kcal Atomic # 14 Polarization: 58.87 SS G_CDS: 1.75 Total: 60.62 kcal Total: -66.31 0.72 -65.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158818298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.235 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds