Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 119.99618 * 2 1 4 4 N 1.34778 * 120.00357 * 180.27892 * 2 1 3 5 5 C 1.39388 * 119.99999 * 174.74844 * 4 2 1 6 6 C 1.39006 * 119.64233 * 185.79937 * 5 4 2 7 7 C 1.38571 * 119.27024 * 179.75454 * 6 5 4 8 8 C 1.38519 * 118.58064 * 0.50717 * 7 6 5 9 9 C 1.39093 * 119.24031 * 359.73301 * 8 7 6 10 10 N 1.38819 * 119.67025 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99885 * 185.02250 * 10 9 8 12 12 C 1.36921 * 120.00111 * 5.02344 * 10 9 8 13 13 H 1.07999 * 119.99547 * 27.14879 * 12 10 9 14 14 C 1.38809 * 119.99736 * 207.15112 * 12 10 9 15 15 N 1.31564 * 120.00323 * 9.12055 * 14 12 10 16 16 Si 1.86804 * 119.99428 * 189.11871 * 14 12 10 17 17 H 1.48498 * 109.47247 * 60.00101 * 16 14 12 18 18 H 1.48499 * 109.46768 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47187 * 299.99704 * 16 14 12 20 20 N 1.32352 * 119.64744 * 6.07056 * 5 4 2 21 21 H 1.08997 * 109.47756 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47320 * 120.00526 * 1 2 3 23 23 H 1.09002 * 109.47066 * 239.99649 * 1 2 3 24 24 H 0.97001 * 119.99940 * 354.75059 * 4 2 1 25 25 H 1.07994 * 120.36119 * 359.97438 * 6 5 4 26 26 H 1.07996 * 120.70624 * 180.22271 * 7 6 5 27 27 H 1.08003 * 120.38117 * 179.75407 * 8 7 6 28 28 H 1.08997 * 109.46989 * 85.03350 * 11 10 9 29 29 H 1.09000 * 109.46930 * 205.02678 * 11 10 9 30 30 H 1.08995 * 109.47279 * 325.02609 * 11 10 9 31 31 H 0.97003 * 119.99647 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.5704 -1.1691 -0.1162 6 6 4.2483 -2.3760 -0.2431 7 6 5.6293 -2.3686 -0.3576 8 6 6.2899 -1.1514 -0.3306 9 6 5.5515 0.0196 -0.1959 10 7 6.2045 1.2443 -0.1673 11 6 5.4469 2.4727 0.0843 12 6 7.5567 1.3042 -0.3742 13 1 8.0462 0.5461 -0.9675 14 6 8.2982 2.3393 0.1786 15 7 7.7409 3.1585 1.0442 16 14 10.0874 2.5690 -0.3066 17 1 10.1771 2.8051 -1.7700 18 1 10.6511 3.7356 0.4190 19 1 10.8565 1.3487 0.0460 20 7 4.2305 -0.0221 -0.0937 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5139 -0.8899 23 1 -0.3633 -0.5139 0.8900 24 1 1.6990 -2.0058 0.0671 25 1 3.7044 -3.3088 -0.2560 26 1 6.1790 -3.2924 -0.4609 27 1 7.3661 -1.1120 -0.4135 28 1 5.3428 2.6217 1.1590 29 1 5.9754 3.3211 -0.3505 30 1 4.4589 2.3894 -0.3685 31 1 8.2590 3.8821 1.4301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = 30.155503 kcal Electronic energy + Delta-G solvation = -16387.016095 eV Core-core repulsion = 13669.611002 eV Total energy + Delta-G solvation = -2717.405093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84570 -38.32035 -35.94709 -33.95437 -31.94695 -31.01218 -29.76723 -27.95966 -26.22211 -24.10760 -22.28219 -21.11216 -19.77219 -17.91840 -16.71620 -16.29985 -15.48055 -15.07179 -14.74424 -14.58803 -14.06087 -13.55379 -13.40329 -12.97823 -12.51658 -12.49821 -12.07654 -11.80361 -11.46214 -11.14212 -11.06581 -10.63745 -10.43207 -10.31835 -10.01643 -9.61428 -9.18018 -8.81269 -7.97302 -7.93612 -6.65867 -6.33088 -3.83385 2.27599 2.58759 3.14745 3.17804 3.20118 3.27538 3.43305 4.03090 4.79270 4.81841 5.06613 5.28064 5.30379 5.43016 5.68028 5.85450 6.10611 6.18700 6.37736 6.52793 6.94735 7.04334 7.09769 7.19787 7.34729 7.42756 7.49820 7.68763 7.76117 8.09379 8.57063 8.64682 9.16348 9.30273 9.83959 10.62807 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.007251 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.843837 B = 3860.597286 C = 4559.805320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.490 3.510 3 O -0.473 6.473 4 N -0.664 5.664 5 C 0.401 3.599 6 C -0.335 4.335 7 C -0.016 4.016 8 C -0.276 4.276 9 C 0.388 3.612 10 N -0.415 5.415 11 C 0.130 3.870 12 C -0.310 4.310 13 H 0.096 0.904 14 C 0.031 3.969 15 N -0.866 5.866 16 Si 0.932 3.068 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.271 1.271 20 N -0.554 5.554 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.409 0.591 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -7.880 -1.873 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.275 3.725 3 O -0.341 6.341 4 N -0.312 5.312 5 C 0.165 3.835 6 C -0.364 4.364 7 C -0.042 4.042 8 C -0.303 4.303 9 C 0.146 3.854 10 N -0.103 5.103 11 C -0.013 4.013 12 C -0.438 4.438 13 H 0.114 0.886 14 C -0.174 4.174 15 N -0.501 5.501 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.196 1.196 20 N -0.280 5.280 21 H 0.109 0.891 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.244 0.756 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.832 -5.700 -1.656 10.641 hybrid contribution 1.030 -1.113 -0.111 1.521 sum -7.802 -6.813 -1.767 10.508 Atomic orbital electron populations 1.21928 0.92078 1.05312 1.03755 1.20933 0.90159 0.84002 0.77378 1.90863 1.69855 1.30358 1.43052 1.43585 1.05035 1.09704 1.72868 1.17874 0.82989 0.89695 0.92990 1.20465 0.95063 0.95597 1.25273 1.20718 0.93144 0.96685 0.93639 1.21101 1.00458 0.91562 1.17184 1.18250 0.86821 0.86712 0.93650 1.42504 1.06082 1.01826 1.59869 1.21318 0.93555 0.86148 1.00281 1.19575 0.81787 1.12415 1.30071 0.88607 1.25477 1.00375 0.96719 0.94871 1.70104 1.37450 1.16744 1.25829 0.85918 0.81408 0.78154 0.78766 1.19718 1.20727 1.19610 1.66868 1.07864 1.26820 1.26441 0.89090 0.89736 0.89782 0.75589 0.87462 0.86837 0.85903 0.93774 0.91933 0.93379 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.32 36.00 0.37 -1.33 16 2 C 0.49 8.13 7.90 -10.99 -0.09 8.04 16 3 O -0.47 -10.65 15.35 5.56 0.09 -10.56 16 4 N -0.66 -10.50 5.39 -11.44 -0.06 -10.56 16 5 C 0.40 8.31 7.42 -154.73 -1.15 7.16 16 6 C -0.33 -6.20 9.94 -39.17 -0.39 -6.59 16 7 C -0.02 -0.32 10.16 -39.35 -0.40 -0.72 16 8 C -0.28 -6.37 9.26 -39.16 -0.36 -6.73 16 9 C 0.39 10.11 7.33 -155.08 -1.14 8.97 16 10 N -0.42 -11.47 3.11 -122.46 -0.38 -11.85 16 11 C 0.13 3.54 8.70 59.85 0.52 4.06 16 12 C -0.31 -8.40 8.79 -15.07 -0.13 -8.53 16 13 H 0.10 2.47 6.46 -52.49 -0.34 2.13 16 14 C 0.03 0.83 5.10 -17.45 -0.09 0.74 16 15 N -0.87 -23.91 10.81 55.49 0.60 -23.31 16 16 Si 0.93 20.16 29.56 -169.99 -5.03 15.13 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 N -0.55 -13.86 6.68 -11.55 -0.08 -13.93 16 21 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.41 4.41 8.70 -40.82 -0.36 4.05 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.12 2.80 6.33 -52.48 -0.33 2.47 16 28 H 0.04 1.25 7.82 -51.93 -0.41 0.85 16 29 H 0.06 1.70 6.84 -51.93 -0.36 1.34 16 30 H 0.05 1.30 7.46 -51.93 -0.39 0.91 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 269.59 15.07 4.06 4.06 Total: -1.00 -33.34 269.59 -7.07 -40.41 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.42 Total: 5.53 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.85 Total: 5.07 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.08 Total: -59.65 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.34 -7.07 -40.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.569 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds