Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 119.99618 * 2 1 4 4 N 1.34778 * 120.00357 * 180.27892 * 2 1 3 5 5 C 1.39388 * 119.99999 * 174.74844 * 4 2 1 6 6 C 1.39006 * 119.64233 * 185.79937 * 5 4 2 7 7 C 1.38571 * 119.27024 * 179.75454 * 6 5 4 8 8 C 1.38519 * 118.58064 * 0.50717 * 7 6 5 9 9 C 1.39093 * 119.24031 * 359.73301 * 8 7 6 10 10 N 1.38819 * 119.67025 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99885 * 185.02250 * 10 9 8 12 12 C 1.36921 * 120.00111 * 5.02344 * 10 9 8 13 13 H 1.07999 * 119.99547 * 27.14879 * 12 10 9 14 14 C 1.38809 * 119.99736 * 207.15112 * 12 10 9 15 15 N 1.31564 * 120.00323 * 9.12055 * 14 12 10 16 16 Si 1.86804 * 119.99428 * 189.11871 * 14 12 10 17 17 H 1.48498 * 109.47247 * 60.00101 * 16 14 12 18 18 H 1.48499 * 109.46768 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47187 * 299.99704 * 16 14 12 20 20 N 1.32352 * 119.64744 * 6.07056 * 5 4 2 21 21 H 1.08997 * 109.47756 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47320 * 120.00526 * 1 2 3 23 23 H 1.09002 * 109.47066 * 239.99649 * 1 2 3 24 24 H 0.97001 * 119.99940 * 354.75059 * 4 2 1 25 25 H 1.07994 * 120.36119 * 359.97438 * 6 5 4 26 26 H 1.07996 * 120.70624 * 180.22271 * 7 6 5 27 27 H 1.08003 * 120.38117 * 179.75407 * 8 7 6 28 28 H 1.08997 * 109.46989 * 85.03350 * 11 10 9 29 29 H 1.09000 * 109.46930 * 205.02678 * 11 10 9 30 30 H 1.08995 * 109.47279 * 325.02609 * 11 10 9 31 31 H 0.97003 * 119.99647 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.5704 -1.1691 -0.1162 6 6 4.2483 -2.3760 -0.2431 7 6 5.6293 -2.3686 -0.3576 8 6 6.2899 -1.1514 -0.3306 9 6 5.5515 0.0196 -0.1959 10 7 6.2045 1.2443 -0.1673 11 6 5.4469 2.4727 0.0843 12 6 7.5567 1.3042 -0.3742 13 1 8.0462 0.5461 -0.9675 14 6 8.2982 2.3393 0.1786 15 7 7.7409 3.1585 1.0442 16 14 10.0874 2.5690 -0.3066 17 1 10.1771 2.8051 -1.7700 18 1 10.6511 3.7356 0.4190 19 1 10.8565 1.3487 0.0460 20 7 4.2305 -0.0221 -0.0937 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5139 -0.8899 23 1 -0.3633 -0.5139 0.8900 24 1 1.6990 -2.0058 0.0671 25 1 3.7044 -3.3088 -0.2560 26 1 6.1790 -3.2924 -0.4609 27 1 7.3661 -1.1120 -0.4135 28 1 5.3428 2.6217 1.1590 29 1 5.9754 3.3211 -0.3505 30 1 4.4589 2.3894 -0.3685 31 1 8.2590 3.8821 1.4301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = 7.609011 kcal Electronic energy + Delta-G solvation = -16387.993785 eV Core-core repulsion = 13669.611002 eV Total energy + Delta-G solvation = -2718.382782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40125 -39.94214 -37.76244 -35.52131 -33.80977 -32.68521 -31.09480 -29.54560 -28.15834 -25.99283 -23.87333 -22.89850 -21.22330 -19.64520 -18.48475 -17.75609 -17.19466 -16.54066 -16.37387 -16.27964 -15.76659 -15.37907 -14.88888 -14.68100 -14.10577 -13.77527 -13.35284 -13.28633 -12.96113 -12.93669 -12.82237 -12.58854 -12.27185 -12.10032 -11.73517 -11.10917 -10.99437 -10.59564 -9.70777 -9.66951 -8.50011 -8.24124 -5.86723 0.63605 0.91205 1.40904 1.48689 1.53877 1.89375 2.12493 2.28215 2.93490 3.03737 3.47226 3.83535 4.16733 4.48265 4.60899 4.64092 4.71807 4.72801 4.79755 4.95021 4.98842 5.13885 5.23511 5.34629 5.40076 5.57937 5.72526 5.93722 6.29485 6.38727 6.71541 7.20358 7.34662 7.54047 7.99843 8.71620 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.007251 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.843837 B = 3860.597286 C = 4559.805320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.481 3.519 3 O -0.543 6.543 4 N -0.648 5.648 5 C 0.378 3.622 6 C -0.303 4.303 7 C -0.006 4.006 8 C -0.300 4.300 9 C 0.366 3.634 10 N -0.455 5.455 11 C 0.164 3.836 12 C -0.330 4.330 13 H 0.100 0.900 14 C -0.019 4.019 15 N -0.910 5.910 16 Si 1.005 2.995 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.261 1.261 20 N -0.589 5.589 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.118 0.882 24 H 0.436 0.564 25 H 0.162 0.838 26 H 0.161 0.839 27 H 0.118 0.882 28 H 0.014 0.986 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -11.413 -2.478 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.270 3.730 3 O -0.417 6.417 4 N -0.298 5.298 5 C 0.142 3.858 6 C -0.330 4.330 7 C -0.032 4.032 8 C -0.327 4.327 9 C 0.127 3.873 10 N -0.147 5.147 11 C 0.020 3.980 12 C -0.458 4.458 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.547 5.547 16 Si 0.827 3.173 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.185 1.185 20 N -0.315 5.315 21 H 0.105 0.895 22 H 0.136 0.864 23 H 0.136 0.864 24 H 0.276 0.724 25 H 0.180 0.820 26 H 0.179 0.821 27 H 0.136 0.864 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.165 -9.363 -2.270 14.006 hybrid contribution 1.119 -0.348 0.062 1.173 sum -9.047 -9.711 -2.208 13.454 Atomic orbital electron populations 1.21915 0.86274 1.06179 1.06922 1.22241 0.92775 0.82941 0.75077 1.90859 1.71786 1.32840 1.46190 1.43604 1.03192 1.11228 1.71763 1.18532 0.85165 0.89520 0.92561 1.21123 0.94986 0.96760 1.20149 1.21286 0.93877 0.96897 0.91117 1.21265 1.00479 0.92263 1.18715 1.18728 0.87709 0.87196 0.93663 1.42550 1.06359 1.02096 1.63719 1.20792 0.92798 0.86627 0.97832 1.19851 0.82030 1.13233 1.30673 0.88264 1.26455 1.04788 0.96207 0.94570 1.70240 1.39131 1.17706 1.27640 0.84815 0.75759 0.78210 0.78481 1.19018 1.20567 1.18525 1.66867 1.07869 1.29648 1.27162 0.89539 0.86371 0.86363 0.72391 0.82001 0.82126 0.86449 0.96775 0.93202 0.94514 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.32 71.23 0.74 -1.78 16 2 C 0.48 15.22 7.90 87.65 0.69 15.91 16 3 O -0.54 -25.16 15.35 -3.03 -0.05 -25.21 16 4 N -0.65 -18.49 5.39 -308.49 -1.66 -20.15 16 5 C 0.38 14.86 7.42 132.91 0.99 15.85 16 6 C -0.30 -9.76 9.94 22.53 0.22 -9.53 16 7 C -0.01 -0.23 10.16 22.42 0.23 0.00 16 8 C -0.30 -13.73 9.26 22.54 0.21 -13.52 16 9 C 0.37 19.64 7.33 133.07 0.98 20.61 16 10 N -0.45 -26.54 3.11 -541.34 -1.68 -28.22 16 11 C 0.16 9.61 8.70 127.77 1.11 10.72 16 12 C -0.33 -18.71 8.79 84.04 0.74 -17.97 16 13 H 0.10 5.32 6.46 -2.91 -0.02 5.30 16 14 C -0.02 -1.06 5.10 84.87 0.43 -0.63 16 15 N -0.91 -53.12 10.81 21.65 0.23 -52.89 16 16 Si 1.01 42.55 29.56 68.60 2.03 44.58 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 N -0.59 -29.96 6.68 -190.44 -1.27 -31.24 16 21 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 22 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.44 7.20 8.70 -92.71 -0.81 6.39 16 25 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.12 5.41 6.33 -2.91 -0.02 5.39 16 28 H 0.01 0.86 7.82 -2.39 -0.02 0.84 16 29 H 0.05 2.94 6.84 -2.39 -0.02 2.92 16 30 H 0.04 2.15 7.46 -2.39 -0.02 2.13 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -80.04 269.59 4.28 -75.76 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.35 Total: 17.69 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.33 Total: 19.67 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -4.38 Total: -132.50 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -80.04 4.28 -75.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.372 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds