Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99870 * 2 1 4 4 O 1.21605 * 120.00092 * 359.97438 * 3 2 1 5 5 C 1.47451 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.39970 * 120.60753 * 5.91759 * 5 3 2 7 7 C 1.38352 * 118.36330 * 180.23550 * 6 5 3 8 8 C 1.38461 * 119.51163 * 359.51440 * 7 6 5 9 9 N 1.31770 * 121.22502 * 0.26946 * 8 7 6 10 10 C 1.32494 * 121.77622 * 359.97438 * 9 8 7 11 11 N 1.38227 * 119.83042 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99992 * 85.72892 * 11 10 9 13 13 C 1.36894 * 119.99876 * 265.73615 * 11 10 9 14 14 H 1.07997 * 119.99827 * 6.57292 * 13 11 10 15 15 C 1.38867 * 119.99713 * 186.57679 * 13 11 10 16 16 N 1.31518 * 120.00382 * 6.77502 * 15 13 11 17 17 Si 1.86806 * 119.99849 * 186.77274 * 15 13 11 18 18 H 1.48494 * 109.47114 * 89.99913 * 17 15 13 19 19 H 1.48502 * 109.46832 * 210.00095 * 17 15 13 20 20 H 1.48501 * 109.46922 * 330.00160 * 17 15 13 21 21 H 1.09002 * 109.46877 * 60.00312 * 1 2 3 22 22 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47322 * 300.00099 * 1 2 3 24 24 H 0.97004 * 120.00452 * 179.97438 * 2 1 3 25 25 H 1.07997 * 120.81946 * 0.02562 * 6 5 3 26 26 H 1.08006 * 120.23904 * 179.78353 * 7 6 5 27 27 H 1.08001 * 119.38115 * 180.25618 * 8 7 6 28 28 H 1.09003 * 109.47030 * 354.32265 * 12 11 10 29 29 H 1.09001 * 109.46589 * 114.31724 * 12 11 10 30 30 H 1.09001 * 109.47418 * 234.31559 * 12 11 10 31 31 H 0.96992 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6134 1.1673 0.0006 6 6 4.3261 -0.0310 -0.1231 7 6 5.7086 0.0225 -0.1120 8 6 6.3429 1.2472 0.0095 9 7 5.6542 2.3652 0.1203 10 6 4.3292 2.3713 0.1203 11 7 3.6472 3.5677 0.2395 12 6 3.3686 4.3738 -0.9517 13 6 3.2323 3.9994 1.4705 14 1 3.5283 3.4618 2.3592 15 6 2.4308 5.1284 1.5765 16 7 1.9604 5.7052 0.4922 17 14 2.0205 5.8279 3.2594 18 1 3.0496 6.8267 3.6445 19 1 0.6885 6.4827 3.2119 20 1 1.9973 4.7303 4.2594 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.9501 -0.8400 0.0004 25 1 3.8097 -0.9743 -0.2213 26 1 6.2887 -0.8841 -0.2019 27 1 7.4221 1.2869 0.0137 28 1 3.8580 3.9255 -1.8164 29 1 2.2925 4.4106 -1.1218 30 1 3.7477 5.3849 -0.8031 31 1 1.4009 6.4940 0.5663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799539.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = 55.239637 kcal Electronic energy + Delta-G solvation = -16880.610781 eV Core-core repulsion = 14164.293418 eV Total energy + Delta-G solvation = -2716.317363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80764 -38.01997 -35.58244 -33.82599 -31.93409 -31.52480 -29.20000 -26.49460 -25.98528 -23.69047 -23.43421 -20.84301 -19.99835 -17.60313 -17.11097 -16.06935 -15.87208 -14.73460 -14.57326 -14.46351 -13.98557 -13.54571 -13.32108 -12.66299 -12.51993 -12.08940 -11.95372 -11.94437 -11.74014 -11.11496 -10.75634 -10.48160 -10.17876 -9.93044 -9.25399 -9.13945 -8.87895 -8.56973 -8.47347 -8.15494 -7.04851 -5.73926 -3.08991 1.41097 1.87938 3.39037 3.42433 3.44925 3.73663 3.77585 4.36736 4.62729 4.90711 5.19466 5.28568 5.37759 5.48654 5.56571 5.73717 5.83196 6.05099 6.14181 6.22563 6.55717 6.64902 6.77235 6.93479 7.17989 7.58381 7.72906 7.97770 8.05605 8.35587 8.82908 9.09118 9.13710 9.83210 10.16745 11.23450 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.011114 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.803399 B = 2518.692513 C = 3277.723416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.751 5.751 3 C 0.543 3.457 4 O -0.466 6.466 5 C -0.215 4.215 6 C -0.042 4.042 7 C -0.229 4.229 8 C 0.127 3.873 9 N -0.507 5.507 10 C 0.436 3.564 11 N -0.519 5.519 12 C 0.174 3.826 13 C -0.226 4.226 14 H 0.073 0.927 15 C 0.012 3.988 16 N -0.886 5.886 17 Si 0.917 3.083 18 H -0.285 1.285 19 H -0.287 1.287 20 H -0.279 1.279 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.390 0.610 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.144 0.856 28 H -0.008 1.008 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -12.958 -2.024 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.408 5.408 3 C 0.330 3.670 4 O -0.336 6.336 5 C -0.226 4.226 6 C -0.068 4.068 7 C -0.251 4.251 8 C -0.036 4.036 9 N -0.220 5.220 10 C 0.204 3.796 11 N -0.231 5.231 12 C 0.031 3.969 13 C -0.353 4.353 14 H 0.091 0.909 15 C -0.188 4.188 16 N -0.528 5.528 17 Si 0.747 3.253 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.205 1.205 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.223 0.777 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.161 0.839 28 H 0.010 0.990 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.577 -10.978 -1.960 11.263 hybrid contribution -0.412 -1.084 0.865 1.446 sum 1.165 -12.062 -1.096 12.167 Atomic orbital electron populations 1.21353 0.80365 1.00914 1.02136 1.45756 1.06997 1.08494 1.79506 1.18052 0.87075 0.83724 0.78180 1.91007 1.68849 1.29603 1.44174 1.21390 0.94282 0.95712 1.11229 1.21508 0.94328 0.96589 0.94417 1.21709 0.94748 0.99141 1.09454 1.22637 0.99602 0.87918 0.93440 1.68011 1.09734 1.30697 1.13517 1.18172 0.86349 0.87125 0.87991 1.41189 1.58359 1.17134 1.06448 1.21191 1.00638 0.92588 0.82451 1.19169 1.25905 1.07340 0.82909 0.90879 1.24921 0.97627 0.98480 0.97728 1.70169 1.35127 1.21489 1.26023 0.86056 0.77571 0.78952 0.82760 1.21137 1.21344 1.20452 0.92724 0.91657 0.92628 0.77703 0.86161 0.85750 0.83883 0.98974 0.90853 0.94277 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 10.70 59.85 0.64 1.97 16 2 N -0.75 -11.79 5.67 -68.17 -0.39 -12.18 16 3 C 0.54 11.60 7.75 -12.51 -0.10 11.50 16 4 O -0.47 -12.29 13.53 5.27 0.07 -12.22 16 5 C -0.21 -4.47 5.91 -104.61 -0.62 -5.09 16 6 C -0.04 -0.65 9.63 -38.89 -0.37 -1.03 16 7 C -0.23 -3.33 10.09 -39.46 -0.40 -3.73 16 8 C 0.13 2.17 11.17 -17.50 -0.20 1.97 16 9 N -0.51 -11.33 10.38 -12.17 -0.13 -11.46 16 10 C 0.44 10.59 5.94 -155.14 -0.92 9.66 16 11 N -0.52 -14.32 1.64 -122.18 -0.20 -14.52 16 12 C 0.17 4.76 8.49 59.85 0.51 5.27 16 13 C -0.23 -6.59 8.77 -15.06 -0.13 -6.73 16 14 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 15 C 0.01 0.35 5.40 -17.45 -0.09 0.26 16 16 N -0.89 -26.21 9.59 55.49 0.53 -25.68 16 17 Si 0.92 22.67 29.56 -169.99 -5.02 17.64 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.39 4.67 6.96 -40.82 -0.28 4.39 16 25 H 0.12 1.38 6.56 -52.49 -0.34 1.04 16 26 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 27 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 28 H -0.01 -0.21 7.90 -51.93 -0.41 -0.62 16 29 H 0.07 2.16 6.42 -51.93 -0.33 1.83 16 30 H 0.04 1.11 7.33 -51.93 -0.38 0.73 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -34.35 267.39 -6.20 -40.55 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.41 Total: -0.23 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: -1.68 Total: 14.06 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.18 Total: -63.84 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.35 -6.20 -40.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799539.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.790 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds