Wall clock time and date at job start Sun Mar 29 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99903 * 2 1 4 4 O 1.21512 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.48152 * 119.99870 * 179.97438 * 3 2 1 6 6 C 1.40044 * 120.88322 * 0.24611 * 5 3 2 7 7 C 1.38033 * 119.18543 * 180.25026 * 6 5 3 8 8 N 1.31846 * 121.01011 * 359.74965 * 7 6 5 9 9 C 1.32437 * 121.94255 * 359.97438 * 8 7 6 10 10 N 1.38838 * 119.65121 * 180.02562 * 9 8 7 11 11 C 1.46497 * 120.00153 * 4.98681 * 10 9 8 12 12 C 1.36880 * 119.99935 * 184.97563 * 10 9 8 13 13 H 1.08005 * 120.00091 * 24.45081 * 12 10 9 14 14 C 1.38832 * 120.00357 * 204.44102 * 12 10 9 15 15 N 1.31557 * 119.99907 * 10.49500 * 14 12 10 16 16 Si 1.86798 * 120.00151 * 190.49337 * 14 12 10 17 17 H 1.48501 * 109.47324 * 84.93482 * 16 14 12 18 18 H 1.48502 * 109.46937 * 204.93222 * 16 14 12 19 19 H 1.48493 * 109.47352 * 324.93327 * 16 14 12 20 20 C 1.39194 * 120.69707 * 0.02562 * 9 8 7 21 21 H 1.08995 * 109.46963 * 60.00344 * 1 2 3 22 22 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47202 * 300.00202 * 1 2 3 24 24 H 0.97000 * 120.00116 * 179.97438 * 2 1 3 25 25 H 1.08000 * 120.40530 * 359.97438 * 6 5 3 26 26 H 1.07998 * 119.49908 * 179.77040 * 7 6 5 27 27 H 1.08996 * 109.47547 * 94.54044 * 11 10 9 28 28 H 1.08998 * 109.47055 * 214.54745 * 11 10 9 29 29 H 1.09005 * 109.47089 * 334.54112 * 11 10 9 30 30 H 0.96996 * 120.00043 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.53491 * 179.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6204 1.1672 0.0006 6 6 4.3392 -0.0347 -0.0040 7 6 5.7189 0.0062 0.0019 8 7 6.3644 1.1558 0.0069 9 6 5.7275 2.3170 0.0060 10 7 6.4551 3.4994 0.0108 11 6 7.9159 3.4611 -0.0933 12 6 5.8076 4.7011 0.1127 13 1 4.8312 4.7511 0.5718 14 6 6.4058 5.8555 -0.3739 15 7 7.4914 5.7727 -1.1124 16 14 5.6692 7.5264 0.0199 17 1 6.1715 7.9906 1.3380 18 1 6.0617 8.5002 -1.0303 19 1 4.1890 7.4167 0.0650 20 6 4.3364 2.3644 0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9500 -0.8400 0.0004 25 1 3.8204 -0.9819 -0.0077 26 1 6.2783 -0.9177 0.0022 27 1 8.2092 3.5811 -1.1362 28 1 8.3437 4.2694 0.4998 29 1 8.2817 2.5043 0.2793 30 1 7.9091 6.5793 -1.4527 31 1 3.8197 3.3129 -0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:23 Heat of formation + Delta-G solvation = 19.218059 kcal Electronic energy + Delta-G solvation = -16137.823611 eV Core-core repulsion = 13419.944235 eV Total energy + Delta-G solvation = -2717.879376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75865 -38.47556 -35.91008 -34.40110 -32.20579 -31.49985 -29.07294 -27.09339 -26.38567 -24.27985 -22.62677 -21.68031 -19.87410 -18.05216 -17.15594 -15.97522 -15.59456 -14.93962 -14.84823 -14.58976 -14.43498 -13.70578 -13.54842 -13.04697 -12.83402 -12.79150 -12.27678 -12.07342 -11.53800 -11.22793 -10.97704 -10.84112 -10.48085 -10.39185 -9.74435 -9.50470 -9.08819 -8.88443 -8.68792 -8.39195 -6.93710 -6.46642 -3.92905 1.66777 2.30778 3.12067 3.15401 3.19891 3.43770 3.54353 3.95121 4.67912 4.68910 5.07400 5.12148 5.31465 5.48400 5.52836 5.78601 5.88648 6.18792 6.25530 6.54404 6.64624 6.67068 6.87093 6.93810 7.04260 7.27181 7.31385 7.45941 7.73565 7.90501 8.40655 8.52604 8.93615 9.12556 9.61518 10.48687 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.007552 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.074441 B = 3706.503798 C = 4678.820864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.735 5.735 3 C 0.562 3.438 4 O -0.537 6.537 5 C -0.057 4.057 6 C -0.289 4.289 7 C 0.158 3.842 8 N -0.564 5.564 9 C 0.357 3.643 10 N -0.410 5.410 11 C 0.124 3.876 12 C -0.313 4.313 13 H 0.101 0.899 14 C 0.035 3.965 15 N -0.864 5.864 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.178 4.178 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.403 0.597 25 H 0.110 0.890 26 H 0.139 0.861 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.273 0.727 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -9.490 1.786 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.350 3.650 4 O -0.414 6.414 5 C -0.067 4.067 6 C -0.317 4.317 7 C -0.005 4.005 8 N -0.286 5.286 9 C 0.115 3.885 10 N -0.097 5.097 11 C -0.020 4.020 12 C -0.441 4.441 13 H 0.119 0.881 14 C -0.172 4.172 15 N -0.498 5.498 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.206 4.206 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.238 0.762 25 H 0.128 0.872 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.380 -8.178 1.671 9.931 hybrid contribution -0.985 0.342 0.055 1.044 sum -6.365 -7.836 1.726 10.242 Atomic orbital electron populations 1.21484 0.80006 1.01754 1.02208 1.45696 1.07306 1.08987 1.76826 1.18608 0.87805 0.83263 0.75316 1.90732 1.70200 1.31364 1.49129 1.19638 0.91093 0.94495 1.01481 1.21168 0.95465 0.95993 1.19091 1.21925 0.91013 0.94613 0.92932 1.66981 1.40617 0.97291 1.23693 1.18357 0.87868 0.86472 0.95774 1.42562 1.05251 1.01509 1.60360 1.21434 0.79584 0.98915 1.02027 1.19735 1.04573 0.82721 1.37119 0.88124 1.25466 0.96521 1.00476 0.94741 1.70083 1.19396 1.30066 1.30293 0.85837 0.79765 0.80372 0.78276 1.19938 1.20580 1.18961 1.21340 0.93115 0.98114 1.08078 0.92394 0.90939 0.92420 0.76244 0.87205 0.84400 0.92228 0.92378 0.93504 0.91702 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.70 59.85 0.64 1.61 16 2 N -0.74 -9.92 5.67 -67.95 -0.39 -10.30 16 3 C 0.56 10.52 7.80 -12.19 -0.10 10.43 16 4 O -0.54 -11.95 16.44 5.35 0.09 -11.86 16 5 C -0.06 -1.14 5.91 -104.68 -0.62 -1.76 16 6 C -0.29 -4.95 9.61 -38.98 -0.37 -5.32 16 7 C 0.16 2.88 11.16 -17.62 -0.20 2.68 16 8 N -0.56 -12.58 8.98 -12.48 -0.11 -12.70 16 9 C 0.36 8.73 7.34 -155.13 -1.14 7.59 16 10 N -0.41 -10.62 3.11 -122.46 -0.38 -11.00 16 11 C 0.12 3.00 8.79 59.85 0.53 3.52 16 12 C -0.31 -8.27 8.89 -15.08 -0.13 -8.40 16 13 H 0.10 2.62 6.35 -52.48 -0.33 2.29 16 14 C 0.03 0.88 5.14 -17.45 -0.09 0.79 16 15 N -0.86 -22.70 10.66 55.49 0.59 -22.11 16 16 Si 0.93 20.01 29.57 -169.99 -5.03 14.98 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C -0.18 -4.19 8.83 -38.76 -0.34 -4.53 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.40 4.28 6.97 -40.82 -0.28 4.00 16 25 H 0.11 1.41 6.53 -52.49 -0.34 1.07 16 26 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.06 1.51 7.35 -51.93 -0.38 1.13 16 28 H 0.06 1.42 7.33 -51.93 -0.38 1.04 16 29 H 0.05 1.05 7.16 -51.93 -0.37 0.68 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.14 3.39 5.97 -52.48 -0.31 3.08 16 LS Contribution 268.37 15.07 4.04 4.04 Total: -1.00 -30.50 268.37 -6.24 -36.73 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.23 Total: 5.59 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.82 Total: 6.62 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.29 Total: -56.11 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.50 -6.24 -36.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.952 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds