Wall clock time and date at job start Sun Mar 29 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99903 * 2 1 4 4 O 1.21512 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.48152 * 119.99870 * 179.97438 * 3 2 1 6 6 C 1.40044 * 120.88322 * 0.24611 * 5 3 2 7 7 C 1.38033 * 119.18543 * 180.25026 * 6 5 3 8 8 N 1.31846 * 121.01011 * 359.74965 * 7 6 5 9 9 C 1.32437 * 121.94255 * 359.97438 * 8 7 6 10 10 N 1.38838 * 119.65121 * 180.02562 * 9 8 7 11 11 C 1.46497 * 120.00153 * 4.98681 * 10 9 8 12 12 C 1.36880 * 119.99935 * 184.97563 * 10 9 8 13 13 H 1.08005 * 120.00091 * 24.45081 * 12 10 9 14 14 C 1.38832 * 120.00357 * 204.44102 * 12 10 9 15 15 N 1.31557 * 119.99907 * 10.49500 * 14 12 10 16 16 Si 1.86798 * 120.00151 * 190.49337 * 14 12 10 17 17 H 1.48501 * 109.47324 * 84.93482 * 16 14 12 18 18 H 1.48502 * 109.46937 * 204.93222 * 16 14 12 19 19 H 1.48493 * 109.47352 * 324.93327 * 16 14 12 20 20 C 1.39194 * 120.69707 * 0.02562 * 9 8 7 21 21 H 1.08995 * 109.46963 * 60.00344 * 1 2 3 22 22 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47202 * 300.00202 * 1 2 3 24 24 H 0.97000 * 120.00116 * 179.97438 * 2 1 3 25 25 H 1.08000 * 120.40530 * 359.97438 * 6 5 3 26 26 H 1.07998 * 119.49908 * 179.77040 * 7 6 5 27 27 H 1.08996 * 109.47547 * 94.54044 * 11 10 9 28 28 H 1.08998 * 109.47055 * 214.54745 * 11 10 9 29 29 H 1.09005 * 109.47089 * 334.54112 * 11 10 9 30 30 H 0.96996 * 120.00043 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.53491 * 179.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6204 1.1672 0.0006 6 6 4.3392 -0.0347 -0.0040 7 6 5.7189 0.0062 0.0019 8 7 6.3644 1.1558 0.0069 9 6 5.7275 2.3170 0.0060 10 7 6.4551 3.4994 0.0108 11 6 7.9159 3.4611 -0.0933 12 6 5.8076 4.7011 0.1127 13 1 4.8312 4.7511 0.5718 14 6 6.4058 5.8555 -0.3739 15 7 7.4914 5.7727 -1.1124 16 14 5.6692 7.5264 0.0199 17 1 6.1715 7.9906 1.3380 18 1 6.0617 8.5002 -1.0303 19 1 4.1890 7.4167 0.0650 20 6 4.3364 2.3644 0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9500 -0.8400 0.0004 25 1 3.8204 -0.9819 -0.0077 26 1 6.2783 -0.9177 0.0022 27 1 8.2092 3.5811 -1.1362 28 1 8.3437 4.2694 0.4998 29 1 8.2817 2.5043 0.2793 30 1 7.9091 6.5793 -1.4527 31 1 3.8197 3.3129 -0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:22 Heat of formation + Delta-G solvation = -2.203064 kcal Electronic energy + Delta-G solvation = -16138.752500 eV Core-core repulsion = 13419.944235 eV Total energy + Delta-G solvation = -2718.808266 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34275 -40.07129 -37.68535 -35.71407 -34.00863 -33.18596 -30.78172 -28.67128 -27.84731 -26.05643 -24.17559 -23.34421 -21.36594 -19.68322 -18.89533 -17.56619 -17.22469 -16.46661 -16.29351 -16.17020 -16.08119 -15.47996 -15.14814 -14.65885 -14.45716 -14.10270 -13.73616 -13.36174 -13.10462 -13.01578 -12.67885 -12.63718 -12.30228 -12.09996 -11.34768 -11.28631 -10.75141 -10.50162 -10.11978 -10.08909 -8.73952 -8.33138 -5.89455 0.04600 0.67403 1.37976 1.42298 1.50398 2.00351 2.15571 2.22884 2.86198 2.94926 3.35675 3.79242 3.94561 4.37681 4.46984 4.52273 4.60984 4.64005 4.82002 4.95476 4.98754 5.05783 5.22597 5.29829 5.32802 5.37930 5.45193 5.77719 6.11362 6.52477 6.56911 7.16121 7.18517 7.28715 7.80495 8.62312 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.007552 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.074441 B = 3706.503798 C = 4678.820864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.708 5.708 3 C 0.556 3.444 4 O -0.583 6.583 5 C -0.057 4.057 6 C -0.247 4.247 7 C 0.151 3.849 8 N -0.575 5.575 9 C 0.348 3.652 10 N -0.447 5.447 11 C 0.146 3.854 12 C -0.335 4.335 13 H 0.088 0.912 14 C -0.008 4.008 15 N -0.897 5.897 16 Si 0.994 3.006 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.270 1.270 20 C -0.221 4.221 21 H 0.049 0.951 22 H 0.122 0.878 23 H 0.050 0.950 24 H 0.421 0.579 25 H 0.170 0.830 26 H 0.192 0.808 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.274 0.726 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -13.046 2.102 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.361 5.361 3 C 0.344 3.656 4 O -0.463 6.463 5 C -0.068 4.068 6 C -0.272 4.272 7 C -0.010 4.010 8 N -0.297 5.297 9 C 0.109 3.891 10 N -0.139 5.139 11 C 0.003 3.997 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.533 5.533 16 Si 0.817 3.183 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.250 4.250 21 H 0.068 0.932 22 H 0.141 0.859 23 H 0.069 0.931 24 H 0.259 0.741 25 H 0.188 0.812 26 H 0.208 0.792 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.786 -11.849 1.996 13.800 hybrid contribution -0.756 0.962 -0.031 1.223 sum -7.541 -10.888 1.965 13.389 Atomic orbital electron populations 1.21769 0.77870 1.04829 1.01527 1.45550 1.08616 1.07880 1.74061 1.18534 0.87322 0.84202 0.75581 1.90721 1.70714 1.33400 1.51484 1.19993 0.92385 0.94421 0.99991 1.21854 0.95254 0.97048 1.13063 1.22926 0.92184 0.94932 0.90955 1.67058 1.41580 0.97784 1.23254 1.18624 0.88277 0.86955 0.95254 1.42582 1.05408 1.01818 1.64091 1.21115 0.79537 0.98783 1.00274 1.19773 1.04582 0.83927 1.38057 0.89468 1.26233 0.96989 1.03295 0.94538 1.70175 1.20662 1.30696 1.31775 0.84921 0.78508 0.76457 0.78407 1.19029 1.19866 1.19471 1.21195 0.93121 0.98570 1.12115 0.93201 0.85922 0.93110 0.74086 0.81236 0.79163 0.94476 0.93792 0.92304 0.91661 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 10.70 127.77 1.37 2.84 16 2 N -0.71 -16.06 5.67 -487.18 -2.76 -18.82 16 3 C 0.56 19.81 7.80 86.88 0.68 20.49 16 4 O -0.58 -26.14 16.44 -3.75 -0.06 -26.20 16 5 C -0.06 -2.19 5.91 -19.90 -0.12 -2.31 16 6 C -0.25 -7.14 9.61 22.66 0.22 -6.93 16 7 C 0.15 4.84 11.16 84.64 0.94 5.78 16 8 N -0.57 -24.83 8.98 -193.40 -1.74 -26.57 16 9 C 0.35 17.39 7.34 133.12 0.98 18.37 16 10 N -0.45 -24.38 3.11 -541.35 -1.69 -26.06 16 11 C 0.15 7.44 8.79 127.77 1.12 8.56 16 12 C -0.33 -18.87 8.89 84.05 0.75 -18.12 16 13 H 0.09 4.95 6.35 -2.91 -0.02 4.93 16 14 C -0.01 -0.43 5.14 84.88 0.44 0.00 16 15 N -0.90 -49.54 10.66 21.65 0.23 -49.31 16 16 Si 0.99 42.98 29.57 68.60 2.03 45.01 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.22 -10.71 8.83 22.80 0.20 -10.51 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.42 6.24 6.97 -92.71 -0.65 5.60 16 25 H 0.17 2.93 6.53 -2.91 -0.02 2.91 16 26 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.04 1.99 7.35 -2.39 -0.02 1.97 16 28 H 0.04 2.27 7.33 -2.39 -0.02 2.25 16 29 H 0.06 2.72 7.16 -2.38 -0.02 2.70 16 30 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.10 5.64 5.97 -2.91 -0.02 5.62 16 Total: -1.00 -72.37 268.37 3.10 -69.27 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.52 Total: 14.51 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.58 Total: 18.18 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -5.95 Total: -120.77 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.37 3.10 -69.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.067 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds