Wall clock time and date at job start Sun Mar 29 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36906 * 119.99920 * 2 1 4 4 H 1.07996 * 119.99968 * 154.87046 * 3 2 1 5 5 C 1.38822 * 119.99774 * 335.14465 * 3 2 1 6 6 N 1.31565 * 119.99885 * 348.42998 * 5 3 2 7 7 Si 1.86801 * 119.99783 * 168.43232 * 5 3 2 8 8 H 1.48499 * 109.47156 * 90.00126 * 7 5 3 9 9 H 1.48502 * 109.46808 * 210.00133 * 7 5 3 10 10 H 1.48500 * 109.47201 * 329.99604 * 7 5 3 11 11 C 1.38877 * 120.00176 * 180.02562 * 2 1 3 12 12 C 1.39589 * 120.24578 * 185.00057 * 11 2 1 13 13 C 1.38609 * 117.84258 * 179.97438 * 12 11 2 14 14 C 1.38323 * 118.41551 * 359.97317 * 13 12 11 15 15 N 1.32232 * 119.69186 * 0.13773 * 14 13 12 16 16 N 1.28235 * 122.40087 * 359.55214 * 15 14 13 17 17 C 1.50719 * 121.04326 * 180.26432 * 14 13 12 18 18 C 1.53003 * 109.67822 * 342.91604 * 17 14 13 19 19 O 1.43200 * 108.65544 * 49.38859 * 18 17 14 20 20 C 1.42834 * 113.16731 * 289.30506 * 19 18 17 21 21 H 1.09001 * 109.47195 * 90.75957 * 1 2 3 22 22 H 1.09001 * 109.46680 * 210.75758 * 1 2 3 23 23 H 1.08996 * 109.47511 * 330.75686 * 1 2 3 24 24 H 0.96999 * 119.99714 * 180.02562 * 6 5 3 25 25 H 1.08004 * 121.07472 * 359.94547 * 12 11 2 26 26 H 1.09002 * 109.43656 * 222.85035 * 17 14 13 27 27 H 1.09000 * 109.43220 * 102.97998 * 17 14 13 28 28 H 1.08991 * 109.60899 * 289.63346 * 18 17 14 29 29 H 1.08997 * 109.73933 * 169.21837 * 18 17 14 30 30 H 1.09003 * 109.36278 * 291.20724 * 20 19 18 31 31 H 1.08993 * 109.26059 * 171.53246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1528 1.2299 0.3972 5 6 1.5518 2.3322 -0.5053 6 7 0.4298 2.2434 -1.1867 7 14 2.3405 4.0009 -0.2179 8 1 3.2807 4.3018 -1.3273 9 1 1.2855 5.0447 -0.1663 10 1 3.0823 3.9829 1.0685 11 6 2.1594 -1.2027 -0.0005 12 6 3.5513 -1.2110 0.1046 13 6 4.1936 -2.4393 0.0995 14 6 3.4244 -3.5838 -0.0083 15 7 2.1096 -3.4826 -0.1057 16 7 1.5049 -2.3518 -0.0963 17 6 4.0606 -4.9501 -0.0138 18 6 5.5552 -4.8214 -0.3151 19 8 6.1108 -3.8190 0.5435 20 6 5.6918 -2.4956 0.2068 21 1 -0.3634 -0.0136 -1.0276 22 1 -0.3633 -0.8831 0.5256 23 1 -0.3634 0.8966 0.5020 24 1 0.0124 3.0445 -1.5401 25 1 4.1097 -0.2901 0.1867 26 1 3.5883 -5.5671 -0.7783 27 1 3.9262 -5.4167 0.9620 28 1 5.6947 -4.5297 -1.3560 29 1 6.0509 -5.7748 -0.1329 30 1 6.1334 -2.2085 -0.7475 31 1 6.0249 -1.8051 0.9815 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:19 Heat of formation + Delta-G solvation = 22.976367 kcal Electronic energy + Delta-G solvation = -16446.746964 eV Core-core repulsion = 13729.030560 eV Total energy + Delta-G solvation = -2717.716403 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25892 -38.12917 -36.33364 -32.81275 -32.54754 -31.70218 -29.01892 -27.11581 -25.68025 -24.70543 -22.93358 -22.09058 -20.18362 -17.69169 -16.92775 -16.58638 -15.76591 -15.38565 -14.74460 -14.54268 -14.30447 -13.97873 -13.47422 -13.15745 -12.75143 -12.34067 -11.98158 -11.77047 -11.55785 -11.36010 -10.98730 -10.86655 -10.60043 -10.58207 -9.97253 -9.83727 -9.71632 -8.99937 -8.83065 -8.39625 -7.16713 -6.60537 -4.07496 1.84657 2.18631 3.01393 3.04890 3.08540 3.81595 4.01326 4.46449 4.50003 4.88243 4.98817 5.11234 5.25719 5.40725 5.50237 5.54927 5.84159 5.85413 5.95330 5.98548 6.14024 6.36326 6.55764 6.63582 6.83109 6.98571 7.13383 7.16467 7.21024 7.26299 7.70579 8.35272 8.97369 9.22180 10.06613 10.37611 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037423 B = 0.007086 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.028889 B = 3950.282017 C = 4597.426664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.403 5.403 3 C -0.319 4.319 4 H 0.099 0.901 5 C 0.036 3.964 6 N -0.859 5.859 7 Si 0.933 3.067 8 H -0.273 1.273 9 H -0.278 1.278 10 H -0.266 1.266 11 C 0.297 3.703 12 C -0.184 4.184 13 C -0.086 4.086 14 C -0.056 4.056 15 N -0.195 5.195 16 N -0.339 5.339 17 C -0.073 4.073 18 C 0.061 3.939 19 O -0.379 6.379 20 C 0.108 3.892 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.275 0.725 25 H 0.137 0.863 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -5.221 1.253 9.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.091 5.091 3 C -0.448 4.448 4 H 0.117 0.883 5 C -0.171 4.171 6 N -0.493 5.493 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.203 1.203 10 H -0.191 1.191 11 C 0.052 3.948 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.208 4.208 15 N -0.041 5.041 16 N -0.199 5.199 17 C -0.112 4.112 18 C -0.016 4.016 19 O -0.297 6.297 20 C 0.031 3.969 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.155 0.845 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.819 -5.486 1.162 8.081 hybrid contribution 1.357 1.830 -0.092 2.280 sum 7.176 -3.656 1.071 8.124 Atomic orbital electron populations 1.21430 0.79150 0.99515 1.01659 1.42447 1.05303 1.00830 1.60550 1.19649 1.01345 0.84225 1.39593 0.88328 1.25480 0.96536 1.00534 0.94597 1.70090 1.17890 1.30491 1.30868 0.85827 0.78846 0.80308 0.79220 1.19901 1.20333 1.19083 1.20028 0.89398 0.88812 0.96542 1.21312 0.94075 0.97621 1.08865 1.20671 0.97010 0.93711 0.98176 1.21313 0.92103 0.94751 1.12593 1.72429 1.08306 1.17728 1.05597 1.72758 1.30123 0.93334 1.23674 1.20536 0.94564 0.93330 1.02816 1.22630 0.93098 0.92011 0.93875 1.88027 1.69924 1.15321 1.56445 1.21292 0.89551 0.84722 1.01315 0.92479 0.93963 0.91496 0.91505 0.84517 0.90110 0.90662 0.92905 0.88536 0.91656 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.04 8.68 59.85 0.52 3.56 16 2 N -0.40 -10.24 3.11 -122.28 -0.38 -10.62 16 3 C -0.32 -7.99 9.06 -15.07 -0.14 -8.13 16 4 H 0.10 2.33 6.14 -52.49 -0.32 2.00 16 5 C 0.04 0.88 5.08 -17.45 -0.09 0.79 16 6 N -0.86 -21.93 10.78 55.49 0.60 -21.33 16 7 Si 0.93 18.72 29.57 -169.99 -5.03 13.69 16 8 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 9 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 C 0.30 7.31 7.41 -154.81 -1.15 6.16 16 12 C -0.18 -3.98 9.08 -38.94 -0.35 -4.34 16 13 C -0.09 -1.66 5.80 -104.64 -0.61 -2.27 16 14 C -0.06 -1.13 6.75 -82.38 -0.56 -1.69 16 15 N -0.19 -4.49 11.40 33.59 0.38 -4.11 16 16 N -0.34 -8.44 10.37 31.24 0.32 -8.11 16 17 C -0.07 -1.12 6.27 -27.87 -0.17 -1.29 16 18 C 0.06 0.79 6.83 37.16 0.25 1.04 16 19 O -0.38 -5.74 10.81 -35.23 -0.38 -6.12 16 20 C 0.11 1.65 6.71 35.82 0.24 1.89 16 21 H 0.06 1.44 7.64 -51.93 -0.40 1.05 16 22 H 0.04 0.97 7.50 -51.93 -0.39 0.58 16 23 H 0.07 1.61 7.03 -51.93 -0.37 1.25 16 24 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.14 2.76 6.25 -52.48 -0.33 2.43 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 260.68 15.07 3.93 3.93 Total: -1.00 -28.76 260.68 -6.07 -34.84 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.47 Total: 2.11 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.05 Total: -4.27 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.92 Total: -44.18 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.38 Total: -6.12 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.76 -6.07 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.813 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds