Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36906 * 119.99920 * 2 1 4 4 H 1.07996 * 119.99968 * 154.87046 * 3 2 1 5 5 C 1.38822 * 119.99774 * 335.14465 * 3 2 1 6 6 N 1.31565 * 119.99885 * 348.42998 * 5 3 2 7 7 Si 1.86801 * 119.99783 * 168.43232 * 5 3 2 8 8 H 1.48499 * 109.47156 * 90.00126 * 7 5 3 9 9 H 1.48502 * 109.46808 * 210.00133 * 7 5 3 10 10 H 1.48500 * 109.47201 * 329.99604 * 7 5 3 11 11 C 1.38877 * 120.00176 * 180.02562 * 2 1 3 12 12 C 1.39589 * 120.24578 * 185.00057 * 11 2 1 13 13 C 1.38609 * 117.84258 * 179.97438 * 12 11 2 14 14 C 1.38323 * 118.41551 * 359.97317 * 13 12 11 15 15 N 1.32232 * 119.69186 * 0.13773 * 14 13 12 16 16 N 1.28235 * 122.40087 * 359.55214 * 15 14 13 17 17 C 1.50719 * 121.04326 * 180.26432 * 14 13 12 18 18 C 1.53003 * 109.67822 * 342.91604 * 17 14 13 19 19 O 1.43200 * 108.65544 * 49.38859 * 18 17 14 20 20 C 1.42834 * 113.16731 * 289.30506 * 19 18 17 21 21 H 1.09001 * 109.47195 * 90.75957 * 1 2 3 22 22 H 1.09001 * 109.46680 * 210.75758 * 1 2 3 23 23 H 1.08996 * 109.47511 * 330.75686 * 1 2 3 24 24 H 0.96999 * 119.99714 * 180.02562 * 6 5 3 25 25 H 1.08004 * 121.07472 * 359.94547 * 12 11 2 26 26 H 1.09002 * 109.43656 * 222.85035 * 17 14 13 27 27 H 1.09000 * 109.43220 * 102.97998 * 17 14 13 28 28 H 1.08991 * 109.60899 * 289.63346 * 18 17 14 29 29 H 1.08997 * 109.73933 * 169.21837 * 18 17 14 30 30 H 1.09003 * 109.36278 * 291.20724 * 20 19 18 31 31 H 1.08993 * 109.26059 * 171.53246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1528 1.2299 0.3972 5 6 1.5518 2.3322 -0.5053 6 7 0.4298 2.2434 -1.1867 7 14 2.3405 4.0009 -0.2179 8 1 3.2807 4.3018 -1.3273 9 1 1.2855 5.0447 -0.1663 10 1 3.0823 3.9829 1.0685 11 6 2.1594 -1.2027 -0.0005 12 6 3.5513 -1.2110 0.1046 13 6 4.1936 -2.4393 0.0995 14 6 3.4244 -3.5838 -0.0083 15 7 2.1096 -3.4826 -0.1057 16 7 1.5049 -2.3518 -0.0963 17 6 4.0606 -4.9501 -0.0138 18 6 5.5552 -4.8214 -0.3151 19 8 6.1108 -3.8190 0.5435 20 6 5.6918 -2.4956 0.2068 21 1 -0.3634 -0.0136 -1.0276 22 1 -0.3633 -0.8831 0.5256 23 1 -0.3634 0.8966 0.5020 24 1 0.0124 3.0445 -1.5401 25 1 4.1097 -0.2901 0.1867 26 1 3.5883 -5.5671 -0.7783 27 1 3.9262 -5.4167 0.9620 28 1 5.6947 -4.5297 -1.3560 29 1 6.0509 -5.7748 -0.1329 30 1 6.1334 -2.2085 -0.7475 31 1 6.0249 -1.8051 0.9815 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = 4.676984 kcal Electronic energy + Delta-G solvation = -16447.540484 eV Core-core repulsion = 13729.030560 eV Total energy + Delta-G solvation = -2718.509924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89099 -39.49816 -38.07207 -34.48006 -34.12159 -33.23046 -30.59748 -28.90688 -27.21172 -26.31213 -24.54236 -23.59498 -21.72330 -19.42020 -18.59104 -18.15303 -17.13840 -16.84408 -16.24237 -16.12759 -15.79392 -15.48540 -15.15596 -14.76871 -14.28984 -13.66625 -13.55090 -13.36942 -13.08329 -12.97984 -12.69765 -12.43587 -12.14314 -12.11638 -11.55789 -11.50375 -11.07773 -10.76341 -10.38765 -10.05725 -9.00427 -8.41085 -5.97028 0.15633 0.49177 1.41889 1.45663 1.55579 2.15423 2.71317 2.74919 2.91746 3.10689 3.53076 3.75541 3.90163 4.09022 4.22999 4.32819 4.40239 4.47546 4.62370 4.67014 4.82853 4.86414 4.87844 5.06747 5.07504 5.20540 5.26808 5.40084 5.56600 5.89654 6.11662 6.51935 7.15085 7.40975 8.29763 8.59505 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037423 B = 0.007086 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.028889 B = 3950.282017 C = 4597.426664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.431 5.431 3 C -0.341 4.341 4 H 0.108 0.892 5 C -0.009 4.009 6 N -0.898 5.898 7 Si 1.003 2.997 8 H -0.269 1.269 9 H -0.278 1.278 10 H -0.257 1.257 11 C 0.282 3.718 12 C -0.193 4.193 13 C -0.081 4.081 14 C -0.047 4.047 15 N -0.226 5.226 16 N -0.374 5.374 17 C -0.076 4.076 18 C 0.061 3.939 19 O -0.385 6.385 20 C 0.111 3.889 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.275 0.725 25 H 0.150 0.850 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.452 -6.025 1.564 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.123 5.123 3 C -0.469 4.469 4 H 0.125 0.875 5 C -0.212 4.212 6 N -0.533 5.533 7 Si 0.825 3.175 8 H -0.195 1.195 9 H -0.204 1.204 10 H -0.181 1.181 11 C 0.038 3.962 12 C -0.227 4.227 13 C -0.091 4.091 14 C -0.200 4.200 15 N -0.069 5.069 16 N -0.233 5.233 17 C -0.115 4.115 18 C -0.015 4.015 19 O -0.303 6.303 20 C 0.034 3.966 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.168 0.832 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.776 -6.353 1.478 10.934 hybrid contribution 0.561 1.779 -0.190 1.875 sum 9.337 -4.574 1.289 10.477 Atomic orbital electron populations 1.21122 0.79611 0.99032 1.00030 1.42556 1.05276 1.01299 1.63139 1.20003 1.02029 0.84588 1.40325 0.87471 1.26409 0.96969 1.03842 0.93968 1.70207 1.19461 1.31340 1.32318 0.84775 0.77829 0.75510 0.79362 1.19457 1.20359 1.18070 1.20426 0.90825 0.88690 0.96272 1.21566 0.93092 0.99304 1.08762 1.21245 0.99696 0.92438 0.95708 1.22273 0.91390 0.97563 1.08760 1.72391 1.10138 1.17159 1.07211 1.72687 1.31439 0.93964 1.25195 1.20778 0.96256 0.90482 1.03989 1.22864 0.91238 0.93251 0.94195 1.88046 1.69695 1.15361 1.57188 1.21447 0.86127 0.85665 1.03352 0.94737 0.93781 0.92274 0.91488 0.83249 0.88653 0.89704 0.91849 0.84735 0.89200 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.43 8.68 127.77 1.11 8.53 16 2 N -0.43 -22.60 3.11 -540.78 -1.68 -24.28 16 3 C -0.34 -17.37 9.06 84.04 0.76 -16.61 16 4 H 0.11 5.05 6.14 -2.91 -0.02 5.03 16 5 C -0.01 -0.43 5.08 84.87 0.43 0.00 16 6 N -0.90 -47.30 10.78 21.65 0.23 -47.07 16 7 Si 1.00 38.37 29.57 68.60 2.03 40.40 16 8 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 9 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 11 C 0.28 14.13 7.41 133.16 0.99 15.11 16 12 C -0.19 -8.19 9.08 22.68 0.21 -7.99 16 13 C -0.08 -2.94 5.80 -19.88 -0.12 -3.06 16 14 C -0.05 -1.79 6.75 42.52 0.29 -1.50 16 15 N -0.23 -10.40 11.40 -47.64 -0.54 -10.94 16 16 N -0.37 -19.08 10.37 -55.08 -0.57 -19.65 16 17 C -0.08 -2.05 6.27 29.86 0.19 -1.87 16 18 C 0.06 1.28 6.83 71.98 0.49 1.78 16 19 O -0.38 -9.86 10.81 -148.98 -1.61 -11.47 16 20 C 0.11 2.94 6.71 71.11 0.48 3.41 16 21 H 0.03 1.85 7.64 -2.39 -0.02 1.83 16 22 H 0.04 2.14 7.50 -2.39 -0.02 2.12 16 23 H 0.06 3.01 7.03 -2.39 -0.02 2.99 16 24 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 25 H 0.15 5.85 6.25 -2.91 -0.02 5.84 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -63.71 260.68 3.82 -59.89 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.14 Total: 15.30 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.82 Total: -2.18 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -2.56 Total: -101.94 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.61 Total: -11.47 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -63.71 3.82 -59.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.564 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds