Wall clock time and date at job start Sun Mar 29 2020 21:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00022 * 2 1 4 4 H 1.09000 * 109.47044 * 5.00296 * 3 2 1 5 5 C 1.53003 * 109.46921 * 124.99890 * 3 2 1 6 6 O 1.42905 * 109.46926 * 55.00312 * 5 3 2 7 7 N 1.46494 * 109.47545 * 245.00278 * 3 2 1 8 8 C 1.37936 * 120.00417 * 155.00251 * 7 3 2 9 9 N 1.32618 * 120.23539 * 0.24434 * 8 7 3 10 10 C 1.32239 * 120.08792 * 180.28388 * 9 8 7 11 11 C 1.38965 * 120.56538 * 359.72494 * 10 9 8 12 12 N 1.31710 * 120.47977 * 0.02562 * 11 10 9 13 13 C 1.33906 * 119.89238 * 359.97438 * 12 11 10 14 14 C 1.40825 * 120.27564 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99816 * 186.70206 * 14 13 12 16 16 C 1.40116 * 120.00200 * 6.69926 * 14 13 12 17 17 N 1.30734 * 119.99928 * 353.45780 * 16 14 13 18 18 Si 1.86795 * 120.00089 * 173.73300 * 16 14 13 19 19 H 1.48502 * 109.47479 * 94.98743 * 18 16 14 20 20 H 1.48510 * 109.47117 * 214.98811 * 18 16 14 21 21 H 1.48506 * 109.47356 * 334.98739 * 18 16 14 22 22 H 1.08004 * 119.99499 * 179.97438 * 1 2 3 23 23 H 1.07996 * 120.00106 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99583 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46855 * 174.99903 * 5 3 2 26 26 H 1.08995 * 109.47730 * 295.00035 * 5 3 2 27 27 H 0.96700 * 113.99807 * 179.97438 * 6 5 3 28 28 H 0.97001 * 120.00151 * 334.99587 * 7 3 2 29 29 H 1.08003 * 119.72010 * 179.70720 * 10 9 8 30 30 H 1.08004 * 119.76370 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99971 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0350 1.3330 1.1817 6 8 3.8841 0.1848 1.1275 7 7 2.8132 1.4362 -1.2517 8 6 3.1482 2.6869 -1.7273 9 7 2.7982 3.7737 -1.0526 10 6 3.1160 4.9715 -1.5141 11 6 3.8224 5.1061 -2.7032 12 7 4.1854 4.0417 -3.3888 13 6 3.8735 2.8197 -2.9389 14 6 4.2571 1.6761 -3.6657 15 1 3.9119 0.7000 -3.3583 16 6 5.0867 1.8047 -4.7875 17 7 5.4005 2.9920 -5.2359 18 14 5.7381 0.2796 -5.6471 19 1 4.8486 -0.0652 -6.7852 20 1 7.1092 0.5439 -6.1529 21 1 5.7745 -0.8526 -4.6867 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 3.6424 2.2367 1.1314 26 1 2.4723 1.3250 2.1151 27 1 4.5274 0.1371 1.8478 28 1 3.0741 0.6435 -1.7462 29 1 2.8239 5.8527 -0.9622 30 1 4.0748 6.0907 -3.0684 31 1 5.9751 3.0810 -6.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169780247.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:38 Heat of formation + Delta-G solvation = 21.977212 kcal Electronic energy + Delta-G solvation = -16364.161124 eV Core-core repulsion = 13646.401394 eV Total energy + Delta-G solvation = -2717.759730 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03994 -37.33522 -34.97139 -33.92866 -32.83565 -31.37694 -29.32378 -27.25044 -25.87686 -22.98052 -21.90574 -20.93468 -19.54234 -17.55579 -17.09682 -16.53100 -15.84462 -15.18699 -14.74337 -14.29601 -14.06750 -13.63061 -13.10431 -13.03161 -12.53863 -12.08629 -11.93436 -11.61622 -11.38884 -11.29799 -10.74528 -10.50010 -10.20366 -9.84993 -9.65086 -9.41065 -9.33331 -9.25123 -8.52956 -7.31198 -6.74662 -6.39315 -4.37708 2.43459 2.68988 3.08109 3.08761 3.12947 3.27389 3.92588 4.44358 4.69890 4.77158 5.09279 5.45811 5.62047 5.69885 5.89731 5.99203 6.02483 6.14855 6.18955 6.28661 6.51262 6.77794 6.81020 7.00672 7.04266 7.11393 7.69820 7.91514 8.03366 8.18195 8.46389 8.66974 8.92356 9.48952 10.03180 10.27269 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.009210 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.048374 B = 3039.324294 C = 3849.795879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.195 3.805 4 H 0.092 0.908 5 C 0.068 3.932 6 O -0.566 6.566 7 N -0.708 5.708 8 C 0.265 3.735 9 N -0.505 5.505 10 C -0.086 4.086 11 C 0.028 3.972 12 N -0.450 5.450 13 C 0.195 3.805 14 C -0.421 4.421 15 H 0.083 0.917 16 C 0.069 3.931 17 N -0.715 5.715 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.260 1.260 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.369 0.631 28 H 0.405 0.595 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -4.782 7.216 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.164 4.164 3 C 0.088 3.912 4 H 0.110 0.890 5 C -0.012 4.012 6 O -0.370 6.370 7 N -0.347 5.347 8 C 0.018 3.982 9 N -0.226 5.226 10 C -0.240 4.240 11 C -0.135 4.135 12 N -0.167 5.167 13 C 0.060 3.940 14 C -0.455 4.455 15 H 0.101 0.899 16 C -0.157 4.157 17 N -0.337 5.337 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.184 1.184 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.214 0.786 28 H 0.243 0.757 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.586 -4.541 6.630 8.799 hybrid contribution 0.755 -0.597 0.027 0.963 sum -2.831 -5.138 6.657 8.873 Atomic orbital electron populations 1.23836 0.95872 1.01585 1.01358 1.23084 0.95672 0.98874 0.98773 1.19796 0.91769 0.94986 0.84666 0.88983 1.22725 0.92773 0.88179 0.97505 1.86499 1.51367 1.45719 1.53452 1.43631 1.62322 1.04513 1.24269 1.19330 0.99721 0.85812 0.93307 1.67270 1.23593 0.98089 1.33689 1.22233 1.09055 0.93404 0.99305 1.23129 0.98241 0.98346 0.93769 1.69485 1.21319 0.96439 1.29506 1.19029 0.92445 0.92918 0.89561 1.19253 1.24952 0.92920 1.08390 0.89879 1.26014 0.95781 0.97003 0.96894 1.70107 1.23021 1.23352 1.17210 0.86319 0.78710 0.81981 0.79926 1.19491 1.20056 1.18355 0.88596 0.88653 0.86853 0.92909 0.94323 0.78569 0.75741 0.86080 0.85944 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 14.32 29.01 0.42 -2.07 16 2 C -0.15 -2.19 8.57 -36.03 -0.31 -2.50 16 3 C 0.19 3.45 2.74 -69.09 -0.19 3.26 16 4 H 0.09 1.72 7.20 -51.93 -0.37 1.35 16 5 C 0.07 1.10 6.85 37.16 0.25 1.35 16 6 O -0.57 -8.76 12.95 -35.23 -0.46 -9.21 16 7 N -0.71 -14.98 5.06 -54.54 -0.28 -15.25 16 8 C 0.26 6.59 7.48 -154.83 -1.16 5.43 16 9 N -0.50 -12.26 9.35 -11.67 -0.11 -12.37 16 10 C -0.09 -2.03 11.22 -17.11 -0.19 -2.22 16 11 C 0.03 0.70 11.21 -17.33 -0.19 0.50 16 12 N -0.45 -12.60 8.07 -10.79 -0.09 -12.69 16 13 C 0.19 5.32 6.56 -84.61 -0.55 4.77 16 14 C -0.42 -11.01 8.86 -37.90 -0.34 -11.35 16 15 H 0.08 2.00 6.16 -52.48 -0.32 1.67 16 16 C 0.07 1.73 5.49 -17.31 -0.10 1.63 16 17 N -0.71 -19.02 11.51 55.56 0.64 -18.38 16 18 Si 0.91 18.43 29.56 -169.99 -5.03 13.40 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H 0.10 1.07 8.06 -52.48 -0.42 0.64 16 23 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 24 H 0.11 1.68 7.86 -52.48 -0.41 1.27 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.37 4.00 9.12 45.56 0.42 4.42 16 28 H 0.41 8.49 6.59 -40.82 -0.27 8.22 16 29 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 30 H 0.12 2.68 8.06 -52.48 -0.42 2.26 16 31 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 274.65 15.07 4.14 4.14 Total: -1.00 -30.70 274.65 -6.16 -36.86 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -2.62 Total: 14.71 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.36 Total: -1.21 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.17 Total: -58.70 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.46 Total: -9.21 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.70 -6.16 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169780247.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.838 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds