Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00022 * 2 1 4 4 H 1.09000 * 109.47044 * 5.00296 * 3 2 1 5 5 C 1.53003 * 109.46921 * 124.99890 * 3 2 1 6 6 O 1.42905 * 109.46926 * 55.00312 * 5 3 2 7 7 N 1.46494 * 109.47545 * 245.00278 * 3 2 1 8 8 C 1.37936 * 120.00417 * 155.00251 * 7 3 2 9 9 N 1.32618 * 120.23539 * 0.24434 * 8 7 3 10 10 C 1.32239 * 120.08792 * 180.28388 * 9 8 7 11 11 C 1.38965 * 120.56538 * 359.72494 * 10 9 8 12 12 N 1.31710 * 120.47977 * 0.02562 * 11 10 9 13 13 C 1.33906 * 119.89238 * 359.97438 * 12 11 10 14 14 C 1.40825 * 120.27564 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99816 * 186.70206 * 14 13 12 16 16 C 1.40116 * 120.00200 * 6.69926 * 14 13 12 17 17 N 1.30734 * 119.99928 * 353.45780 * 16 14 13 18 18 Si 1.86795 * 120.00089 * 173.73300 * 16 14 13 19 19 H 1.48502 * 109.47479 * 94.98743 * 18 16 14 20 20 H 1.48510 * 109.47117 * 214.98811 * 18 16 14 21 21 H 1.48506 * 109.47356 * 334.98739 * 18 16 14 22 22 H 1.08004 * 119.99499 * 179.97438 * 1 2 3 23 23 H 1.07996 * 120.00106 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99583 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46855 * 174.99903 * 5 3 2 26 26 H 1.08995 * 109.47730 * 295.00035 * 5 3 2 27 27 H 0.96700 * 113.99807 * 179.97438 * 6 5 3 28 28 H 0.97001 * 120.00151 * 334.99587 * 7 3 2 29 29 H 1.08003 * 119.72010 * 179.70720 * 10 9 8 30 30 H 1.08004 * 119.76370 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99971 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0350 1.3330 1.1817 6 8 3.8841 0.1848 1.1275 7 7 2.8132 1.4362 -1.2517 8 6 3.1482 2.6869 -1.7273 9 7 2.7982 3.7737 -1.0526 10 6 3.1160 4.9715 -1.5141 11 6 3.8224 5.1061 -2.7032 12 7 4.1854 4.0417 -3.3888 13 6 3.8735 2.8197 -2.9389 14 6 4.2571 1.6761 -3.6657 15 1 3.9119 0.7000 -3.3583 16 6 5.0867 1.8047 -4.7875 17 7 5.4005 2.9920 -5.2359 18 14 5.7381 0.2796 -5.6471 19 1 4.8486 -0.0652 -6.7852 20 1 7.1092 0.5439 -6.1529 21 1 5.7745 -0.8526 -4.6867 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 3.6424 2.2367 1.1314 26 1 2.4723 1.3250 2.1151 27 1 4.5274 0.1371 1.8478 28 1 3.0741 0.6435 -1.7462 29 1 2.8239 5.8527 -0.9622 30 1 4.0748 6.0907 -3.0684 31 1 5.9751 3.0810 -6.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169780247.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -0.841365 kcal Electronic energy + Delta-G solvation = -16365.150612 eV Core-core repulsion = 13646.401394 eV Total energy + Delta-G solvation = -2718.749218 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88578 -38.72869 -36.35613 -35.81864 -34.32498 -33.25344 -30.94792 -28.77045 -27.78427 -24.55841 -23.72587 -22.57236 -20.85069 -19.46972 -18.38717 -18.23608 -17.48928 -16.87099 -16.27533 -15.81835 -15.66121 -15.17358 -14.77286 -14.67395 -14.02672 -13.70754 -13.37920 -13.17762 -12.99480 -12.86443 -12.37821 -11.95085 -11.87384 -11.65247 -11.26551 -11.18512 -10.88015 -10.46851 -10.34957 -9.22224 -8.57192 -8.26984 -6.31247 0.81548 1.24203 1.32128 1.42401 1.53410 1.58457 2.23160 2.85541 2.87875 3.51053 3.89716 3.92123 4.16809 4.26204 4.33516 4.38385 4.50957 4.61742 4.78026 4.86931 4.99178 5.08839 5.15320 5.24342 5.69371 5.82198 5.88080 6.14163 6.34120 6.70106 6.79651 6.93171 7.04845 7.61808 8.10901 8.43833 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.009210 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.048374 B = 3039.324294 C = 3849.795879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.164 4.164 3 C 0.189 3.811 4 H 0.080 0.920 5 C 0.077 3.923 6 O -0.578 6.578 7 N -0.702 5.702 8 C 0.263 3.737 9 N -0.511 5.511 10 C -0.081 4.081 11 C 0.003 3.997 12 N -0.486 5.486 13 C 0.158 3.842 14 C -0.446 4.446 15 H 0.095 0.905 16 C 0.022 3.978 17 N -0.757 5.757 18 Si 0.986 3.014 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.251 1.251 22 H 0.123 0.877 23 H 0.096 0.904 24 H 0.118 0.882 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.389 0.611 28 H 0.404 0.596 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 -6.355 7.971 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.084 3.916 4 H 0.098 0.902 5 C -0.003 4.003 6 O -0.385 6.385 7 N -0.341 5.341 8 C 0.015 3.985 9 N -0.234 5.234 10 C -0.234 4.234 11 C -0.158 4.158 12 N -0.205 5.205 13 C 0.024 3.976 14 C -0.481 4.481 15 H 0.113 0.887 16 C -0.199 4.199 17 N -0.380 5.380 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.175 1.175 22 H 0.141 0.859 23 H 0.114 0.886 24 H 0.136 0.864 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.238 0.762 28 H 0.241 0.759 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.250 -6.117 7.438 10.526 hybrid contribution 0.864 -0.061 -0.093 0.871 sum -3.386 -6.178 7.344 10.177 Atomic orbital electron populations 1.24087 0.95239 1.02928 0.98057 1.22897 0.96158 0.97486 1.01730 1.19977 0.91880 0.96196 0.83561 0.90225 1.22523 0.92434 0.87246 0.98089 1.86444 1.52025 1.45095 1.54970 1.43766 1.61919 1.03111 1.25294 1.19496 0.98930 0.87233 0.92817 1.67408 1.24117 0.98239 1.33636 1.22770 1.07460 0.94351 0.98856 1.23525 0.99051 0.98700 0.94532 1.69403 1.22613 0.97408 1.31038 1.19487 0.93776 0.93329 0.91053 1.19628 1.25915 0.93220 1.09301 0.88722 1.26980 0.95470 1.00318 0.97165 1.70212 1.23919 1.25835 1.18009 0.85126 0.77972 0.77622 0.78638 1.18742 1.19573 1.17466 0.85858 0.88613 0.86449 0.95710 0.91307 0.76218 0.75881 0.82721 0.83858 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 14.32 67.78 0.97 -2.91 16 2 C -0.16 -4.60 8.57 25.64 0.22 -4.38 16 3 C 0.19 6.51 2.74 44.25 0.12 6.63 16 4 H 0.08 2.92 7.20 -2.39 -0.02 2.90 16 5 C 0.08 2.37 6.85 71.98 0.49 2.87 16 6 O -0.58 -16.93 12.95 -148.98 -1.93 -18.86 16 7 N -0.70 -29.63 5.06 -326.47 -1.65 -31.28 16 8 C 0.26 13.19 7.48 134.03 1.00 14.19 16 9 N -0.51 -24.82 9.35 -190.83 -1.78 -26.60 16 10 C -0.08 -3.78 11.22 84.81 0.95 -2.83 16 11 C 0.00 0.17 11.21 84.89 0.95 1.13 16 12 N -0.49 -27.95 8.07 -188.06 -1.52 -29.47 16 13 C 0.16 8.86 6.56 40.35 0.26 9.12 16 14 C -0.45 -23.71 8.86 23.36 0.21 -23.50 16 15 H 0.09 4.59 6.16 -2.91 -0.02 4.57 16 16 C 0.02 1.13 5.49 85.31 0.47 1.60 16 17 N -0.76 -41.13 11.51 21.86 0.25 -40.88 16 18 Si 0.99 37.73 29.56 68.60 2.03 39.75 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 22 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 23 H 0.10 2.25 7.84 -2.91 -0.02 2.23 16 24 H 0.12 3.22 7.86 -2.91 -0.02 3.20 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.39 7.71 9.12 -74.06 -0.68 7.03 16 28 H 0.40 16.89 6.59 -92.71 -0.61 16.28 16 29 H 0.16 6.02 8.06 -2.91 -0.02 6.00 16 30 H 0.14 6.32 8.06 -2.91 -0.02 6.30 16 31 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -66.86 274.65 0.92 -65.94 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.12 Total: 39.50 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.65 Total: 1.91 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -4.70 Total: -128.23 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.93 Total: -18.86 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.75 kcal Total: -66.86 0.92 -65.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169780247.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.096 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds