Wall clock time and date at job start Sun Mar 29 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99836 * 2 1 4 4 H 1.09003 * 109.46998 * 4.99754 * 3 2 1 5 5 C 1.52998 * 109.47068 * 124.99636 * 3 2 1 6 6 O 1.42911 * 109.47141 * 54.99815 * 5 3 2 7 7 N 1.46497 * 109.47131 * 244.99420 * 3 2 1 8 8 C 1.38806 * 119.99842 * 85.00076 * 7 3 2 9 9 C 1.40080 * 120.76022 * 180.02562 * 8 7 3 10 10 N 1.31663 * 119.13804 * 179.97438 * 9 8 7 11 11 C 1.33592 * 120.79253 * 359.97438 * 10 9 8 12 12 C 1.41148 * 119.17350 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99476 * 359.72249 * 12 11 10 14 14 C 1.40045 * 120.00233 * 179.97438 * 12 11 10 15 15 N 1.30722 * 119.99700 * 359.72689 * 14 12 11 16 16 Si 1.86798 * 119.99794 * 179.72744 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99902 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99487 * 16 14 12 20 20 N 1.33608 * 121.65768 * 0.25252 * 11 10 9 21 21 C 1.31661 * 120.78778 * 359.48116 * 20 11 10 22 22 H 1.08005 * 119.99801 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.00285 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.00285 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47424 * 174.99860 * 5 3 2 26 26 H 1.08997 * 109.47115 * 295.00261 * 5 3 2 27 27 H 0.96699 * 113.99958 * 179.97438 * 6 5 3 28 28 H 0.97001 * 120.00586 * 265.00476 * 7 3 2 29 29 H 1.08004 * 120.43187 * 359.94843 * 9 8 7 30 30 H 0.97000 * 120.00057 * 180.02562 * 15 14 12 31 31 H 1.07999 * 120.42823 * 180.27351 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0895 5 6 3.0349 1.3332 1.1817 6 8 3.8840 0.1850 1.1276 7 7 2.8132 1.4362 -1.2517 8 6 2.1919 1.9479 -2.3826 9 6 2.8935 2.0797 -3.5878 10 7 2.2726 2.5685 -4.6409 11 6 0.9902 2.9360 -4.5693 12 6 0.3584 3.4564 -5.7192 13 1 0.9125 3.5575 -6.6406 14 6 -0.9855 3.8465 -5.6637 15 7 -1.6562 3.7236 -4.5485 16 14 -1.8194 4.5423 -7.1835 17 1 -1.7831 3.5344 -8.2734 18 1 -3.2308 4.8765 -6.8644 19 1 -1.1073 5.7700 -7.6206 20 7 0.2922 2.8283 -3.4351 21 6 0.8485 2.3429 -2.3450 22 1 -0.5400 -0.9354 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 3.6422 2.2368 1.1314 26 1 2.4720 1.3252 2.1150 27 1 4.5273 0.1373 1.8480 28 1 3.7438 1.1653 -1.2904 29 1 3.9304 1.7844 -3.6523 30 1 -2.5872 3.9934 -4.5101 31 1 0.2775 2.2544 -1.4325 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169783834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:40 Heat of formation + Delta-G solvation = 1.348112 kcal Electronic energy + Delta-G solvation = -16064.473857 eV Core-core repulsion = 13345.819582 eV Total energy + Delta-G solvation = -2718.654275 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93203 -38.90175 -36.59536 -35.39801 -33.90661 -33.62921 -31.12652 -29.24686 -26.83278 -25.03325 -23.72796 -22.83915 -20.73914 -19.71750 -18.36846 -18.09563 -17.39371 -17.03398 -16.15523 -16.02196 -15.65106 -15.32764 -14.89252 -14.43373 -14.11654 -13.94110 -13.20830 -12.98427 -12.91227 -12.60353 -12.43773 -12.28584 -11.92519 -11.44579 -11.32421 -11.13567 -10.87695 -10.69852 -10.34571 -9.20565 -8.49653 -8.29705 -6.31678 0.89097 1.03096 1.35965 1.43454 1.56682 1.57334 2.28163 2.86574 2.90550 3.45002 3.89759 3.99328 4.01023 4.08282 4.13416 4.34386 4.37114 4.57081 4.65408 4.75916 4.81561 5.11253 5.19697 5.35388 5.56450 5.71734 5.84704 6.25103 6.54339 6.60632 6.81011 6.97261 7.10400 7.34404 8.31131 8.52606 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045609 B = 0.005966 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.769097 B = 4692.516553 C = 5116.451710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.180 3.820 4 H 0.078 0.922 5 C 0.084 3.916 6 O -0.583 6.583 7 N -0.724 5.724 8 C -0.006 4.006 9 C 0.083 3.917 10 N -0.589 5.589 11 C 0.336 3.664 12 C -0.459 4.459 13 H 0.081 0.919 14 C 0.026 3.974 15 N -0.764 5.764 16 Si 0.995 3.005 17 H -0.261 1.261 18 H -0.264 1.264 19 H -0.260 1.260 20 N -0.505 5.505 21 C 0.079 3.921 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.397 0.603 28 H 0.400 0.600 29 H 0.161 0.839 30 H 0.279 0.721 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -3.877 12.045 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.180 4.180 3 C 0.074 3.926 4 H 0.096 0.904 5 C 0.005 3.995 6 O -0.391 6.391 7 N -0.360 5.360 8 C -0.113 4.113 9 C -0.091 4.091 10 N -0.308 5.308 11 C 0.092 3.908 12 C -0.496 4.496 13 H 0.099 0.901 14 C -0.195 4.195 15 N -0.389 5.389 16 Si 0.814 3.186 17 H -0.185 1.185 18 H -0.188 1.188 19 H -0.185 1.185 20 N -0.222 5.222 21 C -0.096 4.096 22 H 0.123 0.877 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.247 0.753 28 H 0.235 0.765 29 H 0.178 0.822 30 H 0.089 0.911 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.827 -3.551 10.915 12.099 hybrid contribution 0.667 -0.203 0.667 0.965 sum 4.494 -3.754 11.582 12.978 Atomic orbital electron populations 1.23980 0.96120 1.02180 1.00610 1.23347 0.95794 0.99349 0.99523 1.20122 0.93398 0.94731 0.84310 0.90413 1.22316 0.92099 0.88528 0.96517 1.86468 1.52126 1.45385 1.55164 1.43616 1.13086 1.72632 1.06623 1.19237 0.95187 1.06435 0.90399 1.22777 0.99876 0.98645 0.87760 1.68528 1.11927 1.19011 1.31337 1.20131 0.85368 0.92880 0.92380 1.19321 0.96363 1.38212 0.95751 0.90063 1.26892 0.97323 0.94519 1.00724 1.70214 1.09321 1.31731 1.27635 0.85097 0.77268 0.79156 0.77060 1.18546 1.18797 1.18463 1.69199 1.36919 1.17177 0.98920 1.23067 0.91189 0.97639 0.97713 0.87660 0.88923 0.87387 0.92075 0.90515 0.75262 0.76451 0.82198 0.91068 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.31 13.80 67.78 0.94 -4.37 16 2 C -0.16 -4.49 8.64 25.65 0.22 -4.27 16 3 C 0.18 4.91 2.49 44.25 0.11 5.02 16 4 H 0.08 2.25 6.18 -2.39 -0.01 2.23 16 5 C 0.08 1.57 6.78 71.98 0.49 2.05 16 6 O -0.58 -10.55 12.74 -148.98 -1.90 -12.44 16 7 N -0.72 -23.59 5.19 -321.24 -1.67 -25.25 16 8 C -0.01 -0.26 6.69 38.93 0.26 0.00 16 9 C 0.08 3.85 11.20 85.17 0.95 4.81 16 10 N -0.59 -32.83 10.34 -193.42 -2.00 -34.83 16 11 C 0.34 20.27 7.35 134.95 0.99 21.26 16 12 C -0.46 -27.19 9.35 23.42 0.22 -26.97 16 13 H 0.08 4.68 7.85 -2.91 -0.02 4.65 16 14 C 0.03 1.42 5.50 85.30 0.47 1.89 16 15 N -0.76 -42.71 11.41 21.84 0.25 -42.46 16 16 Si 0.99 40.26 29.56 68.60 2.03 42.29 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 N -0.51 -29.38 7.84 -193.42 -1.52 -30.90 16 21 C 0.08 3.87 10.43 85.17 0.89 4.76 16 22 H 0.11 2.64 8.06 -2.91 -0.02 2.61 16 23 H 0.09 2.64 6.98 -2.91 -0.02 2.62 16 24 H 0.11 3.05 7.86 -2.91 -0.02 3.03 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.40 3.23 9.12 -74.06 -0.68 2.55 16 28 H 0.40 11.71 8.41 -92.71 -0.78 10.93 16 29 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 30 H 0.28 13.99 8.29 -92.71 -0.77 13.22 16 31 H 0.14 6.23 4.93 -2.91 -0.01 6.22 16 Total: -1.00 -71.86 272.63 0.45 -71.41 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.28 Total: 28.02 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.54 Total: 4.18 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -4.93 Total: -133.45 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.90 Total: -12.44 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -71.86 0.45 -71.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169783834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.756 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds