Wall clock time and date at job start Sun Mar 29 2020 21:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38766 * 119.93342 * 2 1 4 4 N 1.32133 * 120.21087 * 179.76359 * 3 2 1 5 5 C 1.32075 * 120.08546 * 0.50610 * 4 3 2 6 6 C 1.50705 * 120.06685 * 179.76909 * 5 4 3 7 7 C 1.39502 * 119.86359 * 359.49367 * 5 4 3 8 8 C 1.47983 * 120.10378 * 180.23232 * 7 5 4 9 9 O 1.21568 * 119.99916 * 284.05891 * 8 7 5 10 10 N 1.34774 * 120.00242 * 104.05606 * 8 7 5 11 11 C 1.46504 * 119.99988 * 5.45113 * 10 8 7 12 12 C 1.36775 * 120.00216 * 185.44840 * 10 8 7 13 13 H 1.07997 * 119.99904 * 24.37257 * 12 10 8 14 14 C 1.39115 * 120.00172 * 204.36716 * 12 10 8 15 15 N 1.31319 * 119.99487 * 9.21938 * 14 12 10 16 16 Si 1.86797 * 120.00033 * 189.21335 * 14 12 10 17 17 H 1.48492 * 109.47363 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46794 * 120.00496 * 16 14 12 19 19 H 1.48500 * 109.47200 * 240.00017 * 16 14 12 20 20 N 1.31788 * 119.93812 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47473 * 269.98159 * 1 2 3 22 22 H 1.09000 * 109.47422 * 29.98759 * 1 2 3 23 23 H 1.09003 * 109.46692 * 149.98395 * 1 2 3 24 24 H 1.07998 * 119.88811 * 0.02562 * 3 2 1 25 25 H 1.08995 * 109.46930 * 264.20028 * 6 5 4 26 26 H 1.09002 * 109.46948 * 24.20223 * 6 5 4 27 27 H 1.08995 * 109.46952 * 144.19901 * 6 5 4 28 28 H 1.09005 * 109.47313 * 93.97598 * 11 10 8 29 29 H 1.09001 * 109.47480 * 213.97824 * 11 10 8 30 30 H 1.09002 * 109.46707 * 333.97995 * 11 10 8 31 31 H 0.97007 * 119.99764 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1994 1.2026 0.0000 4 7 3.5207 1.2090 0.0047 5 6 4.1883 0.0694 -0.0006 6 6 5.6953 0.0772 -0.0005 7 6 3.4956 -1.1415 -0.0006 8 6 4.2383 -2.4215 -0.0014 9 8 4.7640 -2.8185 -1.0231 10 7 4.3320 -3.1470 1.1305 11 6 3.6005 -2.7311 2.3298 12 6 5.1100 -4.2715 1.1597 13 1 5.9311 -4.3782 0.4664 14 6 4.8435 -5.2780 2.0824 15 7 3.7448 -5.2362 2.8004 16 14 6.0485 -6.6887 2.2998 17 1 7.1991 -6.5031 1.3797 18 1 6.5355 -6.7118 3.7024 19 1 5.3688 -7.9723 1.9906 20 7 2.1646 -1.1420 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5141 24 1 1.6565 2.1362 0.0004 25 1 6.0592 -0.0199 -1.0233 26 1 6.0537 1.0144 0.4252 27 1 6.0629 -0.7572 0.5967 28 1 2.6414 -3.2477 2.3679 29 1 4.1835 -2.9814 3.2161 30 1 3.4323 -1.6546 2.2977 31 1 3.5588 -5.9382 3.4436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194912702.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:27 Heat of formation + Delta-G solvation = 16.905700 kcal Electronic energy + Delta-G solvation = -16582.851395 eV Core-core repulsion = 13864.871747 eV Total energy + Delta-G solvation = -2717.979647 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93817 -38.19410 -34.84378 -34.58804 -32.90993 -31.53334 -29.99936 -26.67710 -25.87633 -25.27012 -23.86569 -21.87807 -19.67345 -17.66349 -16.99492 -16.40553 -15.77627 -15.16880 -14.82052 -14.11717 -13.70253 -13.59247 -13.26536 -12.81357 -12.54793 -12.26581 -12.07459 -12.05426 -11.63491 -11.45347 -11.26960 -11.24523 -10.99429 -10.70369 -10.36279 -10.33718 -9.19794 -9.12398 -8.66584 -8.36762 -7.78648 -6.38807 -3.97855 0.96189 1.40989 3.09506 3.22043 3.28746 3.53490 3.88442 4.01181 4.25097 4.43291 4.68345 4.82430 5.03955 5.16897 5.32058 5.45417 5.59688 5.67131 5.75749 5.90957 5.97608 6.07893 6.25381 6.29744 6.65587 6.82091 7.22360 7.48246 7.55148 8.00143 8.07637 8.36971 9.04989 9.27652 9.82519 10.63903 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.007659 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.991634 B = 3655.074712 C = 4079.112942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.067 3.933 3 C 0.046 3.954 4 N -0.440 5.440 5 C 0.094 3.906 6 C -0.097 4.097 7 C 0.093 3.907 8 C 0.495 3.505 9 O -0.573 6.573 10 N -0.420 5.420 11 C 0.118 3.882 12 C -0.310 4.310 13 H 0.103 0.897 14 C 0.034 3.966 15 N -0.874 5.874 16 Si 0.931 3.069 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.412 5.412 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.166 0.834 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 10.163 0.108 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.115 4.115 4 N -0.154 5.154 5 C -0.046 4.046 6 C -0.155 4.155 7 C -0.050 4.050 8 C 0.280 3.720 9 O -0.457 6.457 10 N -0.136 5.136 11 C -0.025 4.025 12 C -0.438 4.438 13 H 0.121 0.879 14 C -0.170 4.170 15 N -0.513 5.513 16 Si 0.757 3.243 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.129 5.129 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.183 0.817 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.429 9.804 -0.197 10.389 hybrid contribution 0.174 -0.633 0.294 0.719 sum -3.255 9.172 0.097 9.732 Atomic orbital electron populations 1.20637 0.87851 1.03611 1.03322 1.22365 0.98418 0.89586 0.97160 1.23613 0.90729 0.98913 0.98265 1.68248 1.08467 1.29062 1.09638 1.22251 0.98465 0.88206 0.95666 1.20672 0.87385 1.03567 1.03906 1.22494 0.90404 0.96430 0.95697 1.17256 0.85621 0.84479 0.84632 1.90649 1.52053 1.71192 1.31807 1.43401 1.40137 1.22053 1.08039 1.21493 0.98386 0.94107 0.88540 1.19726 1.10136 0.94677 1.19282 0.87930 1.25459 0.96583 0.98419 0.96577 1.69971 1.23020 1.34190 1.24069 0.85784 0.80099 0.80216 0.78166 1.19004 1.20544 1.20540 1.68487 1.07619 1.29006 1.07803 0.90112 0.90537 0.90186 0.81697 0.89668 0.90450 0.89829 0.91398 0.91366 0.96567 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.19 36.00 0.37 -0.71 16 2 C 0.07 1.06 6.79 -82.42 -0.56 0.50 16 3 C 0.05 0.67 10.89 -17.23 -0.19 0.48 16 4 N -0.44 -7.56 10.42 -8.93 -0.09 -7.65 16 5 C 0.09 1.82 6.82 -82.01 -0.56 1.26 16 6 C -0.10 -1.65 9.68 36.01 0.35 -1.30 16 7 C 0.09 2.06 4.55 -82.85 -0.38 1.68 16 8 C 0.50 12.85 5.83 -12.27 -0.07 12.78 16 9 O -0.57 -16.53 16.86 5.31 0.09 -16.44 16 10 N -0.42 -11.13 3.01 -123.23 -0.37 -11.50 16 11 C 0.12 2.83 8.58 59.85 0.51 3.34 16 12 C -0.31 -8.64 9.22 -15.02 -0.14 -8.78 16 13 H 0.10 2.92 7.48 -52.49 -0.39 2.53 16 14 C 0.03 0.90 5.17 -17.45 -0.09 0.81 16 15 N -0.87 -23.33 10.59 55.50 0.59 -22.74 16 16 Si 0.93 20.45 29.56 -169.99 -5.03 15.43 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 N -0.41 -8.52 10.30 -5.89 -0.06 -8.58 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.52 7.29 -51.93 -0.38 1.14 16 28 H 0.07 1.72 7.40 -51.93 -0.38 1.33 16 29 H 0.07 1.64 7.25 -51.93 -0.38 1.26 16 30 H 0.02 0.34 6.63 -51.93 -0.34 0.00 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -32.28 272.83 -5.06 -37.34 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.54 Total: -0.05 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.75 Total: 10.07 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.06 Total: -50.47 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.28 -5.06 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194912702.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds