Wall clock time and date at job start Sun Mar 29 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38766 * 119.93342 * 2 1 4 4 N 1.32133 * 120.21087 * 179.76359 * 3 2 1 5 5 C 1.32075 * 120.08546 * 0.50610 * 4 3 2 6 6 C 1.50705 * 120.06685 * 179.76909 * 5 4 3 7 7 C 1.39502 * 119.86359 * 359.49367 * 5 4 3 8 8 C 1.47983 * 120.10378 * 180.23232 * 7 5 4 9 9 O 1.21568 * 119.99916 * 284.05891 * 8 7 5 10 10 N 1.34774 * 120.00242 * 104.05606 * 8 7 5 11 11 C 1.46504 * 119.99988 * 5.45113 * 10 8 7 12 12 C 1.36775 * 120.00216 * 185.44840 * 10 8 7 13 13 H 1.07997 * 119.99904 * 24.37257 * 12 10 8 14 14 C 1.39115 * 120.00172 * 204.36716 * 12 10 8 15 15 N 1.31319 * 119.99487 * 9.21938 * 14 12 10 16 16 Si 1.86797 * 120.00033 * 189.21335 * 14 12 10 17 17 H 1.48492 * 109.47363 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46794 * 120.00496 * 16 14 12 19 19 H 1.48500 * 109.47200 * 240.00017 * 16 14 12 20 20 N 1.31788 * 119.93812 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47473 * 269.98159 * 1 2 3 22 22 H 1.09000 * 109.47422 * 29.98759 * 1 2 3 23 23 H 1.09003 * 109.46692 * 149.98395 * 1 2 3 24 24 H 1.07998 * 119.88811 * 0.02562 * 3 2 1 25 25 H 1.08995 * 109.46930 * 264.20028 * 6 5 4 26 26 H 1.09002 * 109.46948 * 24.20223 * 6 5 4 27 27 H 1.08995 * 109.46952 * 144.19901 * 6 5 4 28 28 H 1.09005 * 109.47313 * 93.97598 * 11 10 8 29 29 H 1.09001 * 109.47480 * 213.97824 * 11 10 8 30 30 H 1.09002 * 109.46707 * 333.97995 * 11 10 8 31 31 H 0.97007 * 119.99764 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1994 1.2026 0.0000 4 7 3.5207 1.2090 0.0047 5 6 4.1883 0.0694 -0.0006 6 6 5.6953 0.0772 -0.0005 7 6 3.4956 -1.1415 -0.0006 8 6 4.2383 -2.4215 -0.0014 9 8 4.7640 -2.8185 -1.0231 10 7 4.3320 -3.1470 1.1305 11 6 3.6005 -2.7311 2.3298 12 6 5.1100 -4.2715 1.1597 13 1 5.9311 -4.3782 0.4664 14 6 4.8435 -5.2780 2.0824 15 7 3.7448 -5.2362 2.8004 16 14 6.0485 -6.6887 2.2998 17 1 7.1991 -6.5031 1.3797 18 1 6.5355 -6.7118 3.7024 19 1 5.3688 -7.9723 1.9906 20 7 2.1646 -1.1420 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5141 24 1 1.6565 2.1362 0.0004 25 1 6.0592 -0.0199 -1.0233 26 1 6.0537 1.0144 0.4252 27 1 6.0629 -0.7572 0.5967 28 1 2.6414 -3.2477 2.3679 29 1 4.1835 -2.9814 3.2161 30 1 3.4323 -1.6546 2.2977 31 1 3.5588 -5.9382 3.4436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194912702.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:26 Heat of formation + Delta-G solvation = -6.601661 kcal Electronic energy + Delta-G solvation = -16583.870750 eV Core-core repulsion = 13864.871747 eV Total energy + Delta-G solvation = -2718.999003 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.36672 -40.11943 -36.84424 -35.97154 -34.42340 -33.49566 -31.18043 -28.59997 -27.57194 -26.60313 -25.63231 -23.26427 -21.43787 -19.25354 -18.88322 -18.25919 -17.13095 -16.91119 -16.40142 -15.91650 -15.61149 -15.08925 -14.41897 -14.39154 -13.89845 -13.79432 -13.44297 -13.26548 -13.23661 -13.17722 -13.14268 -12.75583 -12.62460 -12.54298 -12.12498 -12.02216 -11.12927 -11.01065 -10.07963 -9.91485 -9.85004 -8.41486 -6.10812 -0.41357 0.03586 1.31355 1.40615 1.55822 1.71676 2.19502 2.51599 2.65104 2.98273 3.09137 3.30172 3.44868 3.69198 4.00163 4.19345 4.24906 4.39253 4.55271 4.67592 4.79504 4.82978 4.86951 4.93385 5.14438 5.20856 5.36689 5.42050 5.94230 6.20851 6.32638 6.70869 6.99630 7.24525 7.80147 8.60994 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.007659 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.991634 B = 3655.074712 C = 4079.112942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.067 3.933 3 C 0.071 3.929 4 N -0.441 5.441 5 C 0.086 3.914 6 C -0.093 4.093 7 C 0.054 3.946 8 C 0.493 3.507 9 O -0.618 6.618 10 N -0.433 5.433 11 C 0.139 3.861 12 C -0.350 4.350 13 H 0.082 0.918 14 C 0.000 4.000 15 N -0.893 5.893 16 Si 1.000 3.000 17 H -0.268 1.268 18 H -0.262 1.262 19 H -0.274 1.274 20 N -0.448 5.448 21 H 0.098 0.902 22 H 0.120 0.880 23 H 0.067 0.933 24 H 0.224 0.776 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 12.024 0.781 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.091 4.091 4 N -0.156 5.156 5 C -0.052 4.052 6 C -0.151 4.151 7 C -0.087 4.087 8 C 0.280 3.720 9 O -0.505 6.505 10 N -0.149 5.149 11 C -0.004 4.004 12 C -0.478 4.478 13 H 0.100 0.900 14 C -0.203 4.203 15 N -0.530 5.530 16 Si 0.822 3.178 17 H -0.192 1.192 18 H -0.186 1.186 19 H -0.200 1.200 20 N -0.166 5.166 21 H 0.116 0.884 22 H 0.138 0.862 23 H 0.086 0.914 24 H 0.241 0.759 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.681 11.660 0.502 12.575 hybrid contribution 0.376 -1.078 0.064 1.143 sum -4.306 10.582 0.566 11.438 Atomic orbital electron populations 1.20839 0.84211 1.05193 1.04860 1.23246 1.00602 0.88690 0.95177 1.24594 0.89912 1.00643 0.93989 1.68392 1.09806 1.27423 1.09980 1.22312 0.99202 0.87889 0.95763 1.20652 0.86640 1.04120 1.03699 1.21844 0.91280 0.95161 1.00394 1.17870 0.84888 0.85588 0.83694 1.90578 1.53841 1.72896 1.33189 1.43621 1.40208 1.22126 1.08985 1.21259 0.96810 0.94948 0.87367 1.19783 1.10984 0.96504 1.20507 0.89981 1.26317 0.98199 1.00334 0.95444 1.70044 1.23921 1.35061 1.23995 0.84787 0.77642 0.76617 0.78753 1.19246 1.18634 1.19987 1.68366 1.07177 1.31989 1.09057 0.88365 0.86178 0.91393 0.75936 0.89721 0.87467 0.92104 0.93204 0.92091 0.94579 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 10.19 71.23 0.73 -0.99 16 2 C 0.07 1.93 6.79 42.69 0.29 2.22 16 3 C 0.07 1.77 10.89 84.77 0.92 2.70 16 4 N -0.44 -13.95 10.42 -182.16 -1.90 -15.85 16 5 C 0.09 3.29 6.82 42.83 0.29 3.58 16 6 C -0.09 -3.19 9.68 71.24 0.69 -2.51 16 7 C 0.05 2.42 4.55 41.84 0.19 2.61 16 8 C 0.49 26.87 5.83 86.83 0.51 27.37 16 9 O -0.62 -37.83 16.86 -3.93 -0.07 -37.90 16 10 N -0.43 -24.04 3.01 -662.06 -1.99 -26.03 16 11 C 0.14 6.86 8.58 127.77 1.10 7.96 16 12 C -0.35 -20.39 9.22 84.13 0.78 -19.62 16 13 H 0.08 4.98 7.48 -2.91 -0.02 4.96 16 14 C 0.00 -0.01 5.17 84.98 0.44 0.43 16 15 N -0.89 -48.21 10.59 21.69 0.23 -47.98 16 16 Si 1.00 42.33 29.56 68.60 2.03 44.36 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 N -0.45 -18.40 10.30 -172.56 -1.78 -20.18 16 21 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.12 1.18 8.09 -2.39 -0.02 1.16 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.22 2.88 8.06 -2.91 -0.02 2.86 16 25 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.06 2.33 7.29 -2.39 -0.02 2.31 16 28 H 0.05 2.59 7.40 -2.38 -0.02 2.58 16 29 H 0.06 3.01 7.25 -2.39 -0.02 3.00 16 30 H 0.04 1.59 6.63 -2.39 -0.02 1.57 16 31 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -74.16 272.83 3.59 -70.57 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.14 Total: 9.26 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 5.93 Total: 23.76 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -5.44 Total: -110.05 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.07 Total: -37.90 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.16 3.59 -70.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194912702.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.966 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds