Wall clock time and date at job start Sun Mar 29 2020 22:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.74309 * 2 1 4 4 C 1.53379 * 109.60121 * 239.58616 * 2 1 3 5 5 N 1.46942 * 109.46336 * 194.27386 * 4 2 1 6 6 C 1.34775 * 120.67716 * 245.97634 * 5 4 2 7 7 O 1.21689 * 120.00136 * 355.42510 * 6 5 4 8 8 C 1.46371 * 119.99892 * 175.42899 * 6 5 4 9 9 H 1.07999 * 120.00315 * 5.72082 * 8 6 5 10 10 C 1.40052 * 119.99826 * 185.71804 * 8 6 5 11 11 N 1.30666 * 120.00143 * 5.29775 * 10 8 6 12 12 Si 1.86802 * 120.00028 * 185.29445 * 10 8 6 13 13 H 1.48504 * 109.47077 * 84.99750 * 12 10 8 14 14 H 1.48490 * 109.47549 * 204.99955 * 12 10 8 15 15 H 1.48508 * 109.47154 * 325.00411 * 12 10 8 16 16 C 1.47443 * 118.63546 * 66.01962 * 5 4 2 17 17 C 1.51050 * 107.04138 * 314.88687 * 16 5 4 18 18 C 1.34465 * 128.46237 * 191.16091 * 17 16 5 19 19 N 1.35214 * 107.57453 * 180.27493 * 18 17 16 20 20 H 0.97002 * 126.00599 * 179.97438 * 19 18 17 21 21 N 1.40299 * 107.98846 * 359.96128 * 19 18 17 22 22 C 1.30228 * 108.17480 * 359.97095 * 21 19 18 23 23 H 1.08992 * 109.47701 * 180.41527 * 1 2 3 24 24 H 1.09003 * 109.46528 * 300.41389 * 1 2 3 25 25 H 1.08994 * 109.47040 * 60.40350 * 1 2 3 26 26 H 1.09003 * 109.47141 * 314.27233 * 4 2 1 27 27 H 1.09001 * 109.46705 * 74.27418 * 4 2 1 28 28 H 0.96996 * 120.00047 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.92684 * 195.51118 * 16 5 4 30 30 H 1.09002 * 109.95508 * 74.27789 * 16 5 4 31 31 H 1.08000 * 126.21272 * 0.27632 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0258 0.0000 4 6 2.0446 -0.7315 -1.2461 5 7 3.4737 -1.0315 -1.0825 6 6 4.3941 -0.4474 -1.8750 7 8 4.0402 0.2725 -2.7901 8 6 5.8193 -0.6790 -1.6351 9 1 6.1321 -1.3889 -0.8837 10 6 6.7774 0.0200 -2.3800 11 7 6.4028 0.9525 -3.2151 12 14 8.5909 -0.3809 -2.1797 13 1 8.9457 -1.5224 -3.0609 14 1 9.4040 0.8041 -2.5532 15 1 8.8645 -0.7434 -0.7658 16 6 3.8799 -1.9855 -0.0342 17 6 3.1111 -1.6244 1.2149 18 6 3.2945 -2.0735 2.4690 19 7 2.3687 -1.4790 3.2550 20 1 2.2605 -1.6127 4.2097 21 7 1.5924 -0.6345 2.4472 22 6 2.0364 -0.7197 1.2259 23 1 -0.3634 -1.0275 0.0074 24 1 -0.3632 0.5203 0.8863 25 1 -0.3633 0.5075 -0.8935 26 1 1.4906 -1.6612 -1.3763 27 1 1.9040 -0.0989 -2.1226 28 1 7.0664 1.4363 -3.7313 29 1 4.9507 -1.9004 0.1508 30 1 3.6343 -3.0022 -0.3410 31 1 4.0450 -2.7806 2.7902 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262185858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:15 Heat of formation + Delta-G solvation = 13.520414 kcal Electronic energy + Delta-G solvation = -16639.110192 eV Core-core repulsion = 13920.983748 eV Total energy + Delta-G solvation = -2718.126444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.34513 -39.64170 -36.99250 -34.70981 -34.60797 -31.80399 -31.09997 -29.01678 -27.13610 -25.86373 -24.03276 -21.64597 -21.31848 -19.75047 -18.90776 -17.92453 -17.63553 -16.44697 -16.24102 -15.82490 -15.42028 -15.21376 -14.51616 -14.32208 -13.80508 -13.59418 -13.50004 -13.20022 -12.98882 -12.71688 -12.62983 -12.35567 -12.24412 -12.00972 -11.87703 -11.38092 -10.88649 -10.30996 -9.80387 -9.35356 -9.04318 -8.26870 -6.78770 1.00793 1.42849 1.45323 1.58947 1.78394 2.05529 2.27026 2.49606 2.84554 3.54715 3.65348 3.88393 4.09462 4.18330 4.41109 4.57460 4.62151 4.72068 4.76926 4.87097 4.97610 5.09272 5.10599 5.14995 5.29886 5.42067 5.65703 5.80518 6.16693 6.43669 6.55865 6.77834 6.92078 7.46496 8.50577 8.71102 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.008099 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.128168 B = 3456.293080 C = 4125.126867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.025 4.025 3 H 0.060 0.940 4 C 0.129 3.871 5 N -0.646 5.646 6 C 0.544 3.456 7 O -0.633 6.633 8 C -0.567 4.567 9 H 0.097 0.903 10 C 0.029 3.971 11 N -0.825 5.825 12 Si 0.995 3.005 13 H -0.260 1.260 14 H -0.277 1.277 15 H -0.245 1.245 16 C 0.200 3.800 17 C -0.278 4.278 18 C 0.089 3.911 19 N -0.474 5.474 20 H 0.454 0.546 21 N -0.316 5.316 22 C 0.081 3.919 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.273 0.727 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -8.299 12.707 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.047 4.047 3 H 0.078 0.922 4 C 0.005 3.995 5 N -0.381 5.381 6 C 0.350 3.650 7 O -0.521 6.521 8 C -0.603 4.603 9 H 0.115 0.885 10 C -0.186 4.186 11 N -0.455 5.455 12 Si 0.814 3.186 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.168 1.168 16 C 0.076 3.924 17 C -0.290 4.290 18 C -0.058 4.058 19 N -0.185 5.185 20 H 0.301 0.699 21 N -0.139 5.139 22 C -0.087 4.087 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.315 -7.253 12.872 15.701 hybrid contribution 1.165 -0.144 -0.273 1.205 sum -4.151 -7.396 12.599 15.188 Atomic orbital electron populations 1.21605 0.91207 1.02687 1.02677 1.20040 0.97583 0.97367 0.89666 0.92192 1.21248 0.82642 0.99296 0.96333 1.48112 1.05425 1.47703 1.36844 1.18648 0.87219 0.78613 0.80493 1.90531 1.82334 1.43912 1.35284 1.21495 0.89379 1.26570 1.22896 0.88499 1.27002 1.06483 0.92576 0.92569 1.70175 1.37164 1.18070 1.20053 0.85073 0.74664 0.78433 0.80404 1.18494 1.20234 1.16828 1.19919 0.98574 0.91355 0.82514 1.20706 1.03853 1.07309 0.97139 1.22499 0.95089 0.98750 0.89463 1.46312 1.25929 1.35081 1.11136 0.69875 1.76876 1.19146 1.15588 1.02302 1.22200 0.95636 0.97468 0.93367 0.91768 0.91751 0.91044 0.91016 0.91852 0.91676 0.89071 0.91044 0.75976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 9.06 71.98 0.65 -2.84 16 2 C -0.02 -0.91 3.28 -11.35 -0.04 -0.94 16 3 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.13 5.34 5.67 86.42 0.49 5.83 16 5 N -0.65 -30.39 2.93 -826.30 -2.42 -32.81 16 6 C 0.54 32.05 7.61 86.36 0.66 32.71 16 7 O -0.63 -43.06 14.49 -4.31 -0.06 -43.13 16 8 C -0.57 -31.85 8.83 24.83 0.22 -31.63 16 9 H 0.10 4.77 5.77 -2.91 -0.02 4.76 16 10 C 0.03 1.59 5.49 85.31 0.47 2.06 16 11 N -0.82 -50.87 11.88 21.84 0.26 -50.61 16 12 Si 0.99 40.49 29.56 68.60 2.03 42.52 16 13 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 14 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 15 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 16 C 0.20 7.38 6.65 85.56 0.57 7.95 16 17 C -0.28 -9.06 5.99 -20.07 -0.12 -9.18 16 18 C 0.09 2.04 11.95 83.31 1.00 3.03 16 19 N -0.47 -10.80 7.37 -57.94 -0.43 -11.23 16 20 H 0.45 6.41 8.96 -213.19 -1.91 4.50 16 21 N -0.32 -10.05 12.56 -47.12 -0.59 -10.64 16 22 C 0.08 2.86 6.48 43.41 0.28 3.14 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 27 H 0.06 2.96 6.99 -2.39 -0.02 2.94 16 28 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 29 H 0.09 3.42 5.51 -2.39 -0.01 3.40 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -80.67 263.47 2.22 -78.45 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.75 Total: 17.34 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 4.18 Total: 10.11 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.18 Total: -105.29 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.06 Total: -43.13 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -80.67 2.22 -78.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262185858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.970 kcal (2) G-P(sol) polarization free energy of solvation -80.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds