Wall clock time and date at job start Sun Mar 29 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.60114 * 2 1 4 4 C 1.53371 * 109.60595 * 120.32770 * 2 1 3 5 5 N 1.46946 * 109.45997 * 165.71407 * 4 2 1 6 6 C 1.34776 * 120.68002 * 113.94361 * 5 4 2 7 7 O 1.21691 * 119.99658 * 354.77444 * 6 5 4 8 8 C 1.46366 * 119.99766 * 174.78324 * 6 5 4 9 9 H 1.07995 * 120.00839 * 4.98732 * 8 6 5 10 10 C 1.40057 * 119.99802 * 184.99453 * 8 6 5 11 11 N 1.30665 * 119.99769 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00012 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47161 * 59.99315 * 12 10 8 14 14 H 1.48497 * 109.47050 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46958 * 299.99428 * 12 10 8 16 16 C 1.47432 * 118.63739 * 293.96226 * 5 4 2 17 17 C 1.51056 * 107.10897 * 45.05063 * 16 5 4 18 18 C 1.34345 * 128.56471 * 168.66460 * 17 16 5 19 19 N 1.35214 * 107.61077 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.99747 * 180.02562 * 19 18 17 21 21 N 1.40301 * 107.99566 * 0.09749 * 19 18 17 22 22 C 1.30228 * 108.17192 * 0.03237 * 21 19 18 23 23 H 1.08998 * 109.47647 * 299.67262 * 1 2 3 24 24 H 1.09001 * 109.46959 * 59.67160 * 1 2 3 25 25 H 1.09002 * 109.46951 * 179.67023 * 1 2 3 26 26 H 1.09005 * 109.46845 * 45.71756 * 4 2 1 27 27 H 1.09002 * 109.47674 * 285.71263 * 4 2 1 28 28 H 0.97009 * 119.99802 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.93844 * 164.47027 * 16 5 4 30 30 H 1.08995 * 109.94519 * 285.62224 * 16 5 4 31 31 H 1.07995 * 126.17025 * 0.03530 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0446 -0.7295 1.2471 5 7 3.4737 -1.0300 1.0836 6 6 4.3945 -0.4435 1.8739 7 8 4.0568 0.4138 2.6688 8 6 5.8007 -0.8378 1.7760 9 1 6.1134 -1.5390 1.0166 10 6 6.7408 -0.3056 2.6675 11 7 6.3626 0.5431 3.5861 12 14 8.5353 -0.8092 2.5430 13 1 9.0613 -0.4403 1.2042 14 1 9.3195 -0.1100 3.5924 15 1 8.6517 -2.2774 2.7332 16 6 3.8796 -1.9858 0.0371 17 6 3.1101 -1.6294 -1.2130 18 6 3.2937 -2.0779 -2.4660 19 7 2.3692 -1.4829 -3.2531 20 1 2.2620 -1.6168 -4.2078 21 7 1.5932 -0.6367 -2.4466 22 6 2.0364 -0.7213 -1.2250 23 1 -0.3634 0.5087 0.8929 24 1 -0.3633 0.5189 -0.8870 25 1 -0.3633 -1.0277 -0.0059 26 1 1.4906 -1.6590 1.3788 27 1 1.9044 -0.0957 2.1227 28 1 7.0138 0.9120 4.2033 29 1 4.9502 -1.9011 -0.1487 30 1 3.6356 -3.0020 0.3467 31 1 4.0435 -2.7862 -2.7859 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262185859.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:18 Heat of formation + Delta-G solvation = 39.421447 kcal Electronic energy + Delta-G solvation = -16620.268078 eV Core-core repulsion = 13903.264787 eV Total energy + Delta-G solvation = -2717.003291 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09836 -37.78135 -35.23498 -33.15243 -32.48824 -30.46332 -29.75001 -27.18419 -25.49345 -24.30707 -22.58548 -20.23118 -19.68153 -18.20474 -17.59326 -16.18531 -15.62884 -14.97840 -14.49929 -14.25797 -13.85284 -13.78543 -13.11251 -12.75363 -12.36344 -12.02264 -11.62134 -11.58052 -11.48711 -11.10561 -11.02295 -10.85975 -10.53594 -10.35405 -10.21154 -9.89797 -9.08622 -8.83518 -8.12392 -7.56759 -7.21925 -6.18259 -4.62928 2.16961 3.08082 3.10833 3.16144 3.21248 3.22688 4.09309 4.51753 4.59474 4.86827 5.04535 5.37588 5.49369 5.66053 5.81131 5.92734 5.94590 6.06602 6.11555 6.21162 6.39058 6.45614 6.50875 6.58350 6.68559 6.98541 7.46362 7.52465 7.61786 7.97622 8.14426 8.37837 9.03440 9.45094 10.59183 10.77783 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.007915 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.449407 B = 3536.740824 C = 4218.890351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.029 4.029 3 H 0.089 0.911 4 C 0.129 3.871 5 N -0.641 5.641 6 C 0.562 3.438 7 O -0.577 6.577 8 C -0.544 4.544 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.200 3.800 17 C -0.238 4.238 18 C 0.054 3.946 19 N -0.494 5.494 20 H 0.434 0.566 21 N -0.297 5.297 22 C 0.103 3.897 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.269 0.731 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -6.105 -10.223 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 H 0.107 0.893 4 C 0.004 3.996 5 N -0.379 5.379 6 C 0.368 3.632 7 O -0.459 6.459 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.730 3.270 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.192 1.192 16 C 0.074 3.926 17 C -0.251 4.251 18 C -0.092 4.092 19 N -0.203 5.203 20 H 0.277 0.723 21 N -0.119 5.119 22 C -0.066 4.066 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.226 -4.973 -10.347 13.060 hybrid contribution 1.532 -0.822 -0.383 1.780 sum -4.695 -5.795 -10.729 13.067 Atomic orbital electron populations 1.21691 0.93980 1.01784 1.01907 1.20216 0.95364 0.99333 0.90186 0.89285 1.21178 0.83708 0.98512 0.96194 1.48249 1.04923 1.47537 1.37167 1.18216 0.85463 0.80547 0.79003 1.90591 1.81085 1.34099 1.40157 1.20937 0.91010 1.28491 1.17572 0.90989 1.25722 1.00113 0.93334 0.94015 1.70002 1.34908 1.21858 1.12891 0.86465 0.82537 0.79396 0.78558 1.19313 1.20573 1.19224 1.19805 0.98375 0.91729 0.82645 1.20770 1.02966 1.05054 0.96268 1.21864 0.95874 1.00251 0.91163 1.46266 1.27141 1.36657 1.10243 0.72320 1.76945 1.18049 1.14321 1.02588 1.22302 0.94685 0.96568 0.93075 0.92014 0.92336 0.92851 0.93248 0.88972 0.92039 0.88605 0.92904 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 37.16 0.34 -1.61 16 2 C -0.03 -0.52 3.28 -91.48 -0.30 -0.82 16 3 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 4 C 0.13 2.58 5.64 -3.61 -0.02 2.56 16 5 N -0.64 -14.77 2.93 -175.17 -0.51 -15.28 16 6 C 0.56 15.92 7.62 -12.99 -0.10 15.82 16 7 O -0.58 -18.52 14.47 5.20 0.08 -18.45 16 8 C -0.54 -15.06 8.82 -35.63 -0.31 -15.37 16 9 H 0.07 1.80 5.84 -52.49 -0.31 1.49 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.84 11.84 55.55 0.66 -22.18 16 12 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 C 0.20 3.80 6.56 -4.51 -0.03 3.77 16 17 C -0.24 -4.13 5.99 -104.92 -0.63 -4.75 16 18 C 0.05 0.72 11.95 -17.44 -0.21 0.52 16 19 N -0.49 -6.55 7.37 30.31 0.22 -6.32 16 20 H 0.43 3.99 8.96 -182.44 -1.64 2.35 16 21 N -0.30 -5.02 12.56 33.78 0.42 -4.59 16 22 C 0.10 1.86 6.48 -82.27 -0.53 1.33 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.09 2.00 7.03 -51.93 -0.36 1.64 16 28 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 29 H 0.10 1.86 5.68 -51.93 -0.29 1.56 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -35.20 263.58 -6.77 -41.97 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.69 Total: 2.32 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.89 Total: 3.76 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.79 Total: -48.38 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.20 -6.77 -41.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262185859.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.387 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds