Wall clock time and date at job start Sun Mar 29 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.60114 * 2 1 4 4 C 1.53371 * 109.60595 * 120.32770 * 2 1 3 5 5 N 1.46946 * 109.45997 * 165.71407 * 4 2 1 6 6 C 1.34776 * 120.68002 * 113.94361 * 5 4 2 7 7 O 1.21691 * 119.99658 * 354.77444 * 6 5 4 8 8 C 1.46366 * 119.99766 * 174.78324 * 6 5 4 9 9 H 1.07995 * 120.00839 * 4.98732 * 8 6 5 10 10 C 1.40057 * 119.99802 * 184.99453 * 8 6 5 11 11 N 1.30665 * 119.99769 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00012 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47161 * 59.99315 * 12 10 8 14 14 H 1.48497 * 109.47050 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46958 * 299.99428 * 12 10 8 16 16 C 1.47432 * 118.63739 * 293.96226 * 5 4 2 17 17 C 1.51056 * 107.10897 * 45.05063 * 16 5 4 18 18 C 1.34345 * 128.56471 * 168.66460 * 17 16 5 19 19 N 1.35214 * 107.61077 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.99747 * 180.02562 * 19 18 17 21 21 N 1.40301 * 107.99566 * 0.09749 * 19 18 17 22 22 C 1.30228 * 108.17192 * 0.03237 * 21 19 18 23 23 H 1.08998 * 109.47647 * 299.67262 * 1 2 3 24 24 H 1.09001 * 109.46959 * 59.67160 * 1 2 3 25 25 H 1.09002 * 109.46951 * 179.67023 * 1 2 3 26 26 H 1.09005 * 109.46845 * 45.71756 * 4 2 1 27 27 H 1.09002 * 109.47674 * 285.71263 * 4 2 1 28 28 H 0.97009 * 119.99802 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.93844 * 164.47027 * 16 5 4 30 30 H 1.08995 * 109.94519 * 285.62224 * 16 5 4 31 31 H 1.07995 * 126.17025 * 0.03530 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0446 -0.7295 1.2471 5 7 3.4737 -1.0300 1.0836 6 6 4.3945 -0.4435 1.8739 7 8 4.0568 0.4138 2.6688 8 6 5.8007 -0.8378 1.7760 9 1 6.1134 -1.5390 1.0166 10 6 6.7408 -0.3056 2.6675 11 7 6.3626 0.5431 3.5861 12 14 8.5353 -0.8092 2.5430 13 1 9.0613 -0.4403 1.2042 14 1 9.3195 -0.1100 3.5924 15 1 8.6517 -2.2774 2.7332 16 6 3.8796 -1.9858 0.0371 17 6 3.1101 -1.6294 -1.2130 18 6 3.2937 -2.0779 -2.4660 19 7 2.3692 -1.4829 -3.2531 20 1 2.2620 -1.6168 -4.2078 21 7 1.5932 -0.6367 -2.4466 22 6 2.0364 -0.7213 -1.2250 23 1 -0.3634 0.5087 0.8929 24 1 -0.3633 0.5189 -0.8870 25 1 -0.3633 -1.0277 -0.0059 26 1 1.4906 -1.6590 1.3788 27 1 1.9044 -0.0957 2.1227 28 1 7.0138 0.9120 4.2033 29 1 4.9502 -1.9011 -0.1487 30 1 3.6356 -3.0020 0.3467 31 1 4.0435 -2.7862 -2.7859 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262185859.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:17 Heat of formation + Delta-G solvation = 13.352673 kcal Electronic energy + Delta-G solvation = -16621.398505 eV Core-core repulsion = 13903.264787 eV Total energy + Delta-G solvation = -2718.133718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.34863 -39.63788 -36.98599 -34.71307 -34.59805 -31.80660 -31.11287 -29.00753 -27.13540 -25.86221 -24.03384 -21.64255 -21.31228 -19.77143 -18.91190 -17.90811 -17.62164 -16.42546 -16.22865 -15.87687 -15.41975 -15.20817 -14.46354 -14.34000 -13.80810 -13.68495 -13.41519 -13.19008 -12.97374 -12.68759 -12.63143 -12.35421 -12.26750 -12.03618 -11.88546 -11.39141 -10.87237 -10.31611 -9.80638 -9.35945 -9.04463 -8.24665 -6.79165 1.00415 1.43245 1.46954 1.58175 1.77497 2.05080 2.27567 2.50160 2.84965 3.52718 3.67520 3.88410 4.08572 4.18089 4.40805 4.57469 4.62346 4.71742 4.76794 4.86643 4.97284 5.09223 5.10952 5.15192 5.29966 5.41447 5.64863 5.80589 6.16665 6.44043 6.55416 6.77307 6.92216 7.46887 8.51159 8.71868 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.007915 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.449407 B = 3536.740824 C = 4218.890351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.025 4.025 3 H 0.060 0.940 4 C 0.130 3.870 5 N -0.646 5.646 6 C 0.543 3.457 7 O -0.632 6.632 8 C -0.567 4.567 9 H 0.097 0.903 10 C 0.028 3.972 11 N -0.824 5.824 12 Si 0.995 3.005 13 H -0.255 1.255 14 H -0.278 1.278 15 H -0.250 1.250 16 C 0.202 3.798 17 C -0.279 4.279 18 C 0.090 3.910 19 N -0.474 5.474 20 H 0.454 0.546 21 N -0.315 5.315 22 C 0.081 3.919 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.273 0.727 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -8.284 -12.727 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.047 4.047 3 H 0.078 0.922 4 C 0.005 3.995 5 N -0.381 5.381 6 C 0.349 3.651 7 O -0.519 6.519 8 C -0.603 4.603 9 H 0.115 0.885 10 C -0.187 4.187 11 N -0.454 5.454 12 Si 0.814 3.186 13 H -0.179 1.179 14 H -0.203 1.203 15 H -0.173 1.173 16 C 0.078 3.922 17 C -0.291 4.291 18 C -0.057 4.057 19 N -0.185 5.185 20 H 0.301 0.699 21 N -0.139 5.139 22 C -0.087 4.087 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.320 -7.188 -12.929 15.720 hybrid contribution 1.157 -0.183 0.287 1.206 sum -4.163 -7.371 -12.641 15.214 Atomic orbital electron populations 1.21610 0.91247 1.02677 1.02670 1.20034 0.97576 0.97376 0.89689 0.92171 1.21254 0.82631 0.99235 0.96345 1.48124 1.05410 1.47419 1.37161 1.18655 0.86926 0.80363 0.79137 1.90537 1.82232 1.36523 1.42654 1.21487 0.91231 1.29109 1.18476 0.88533 1.27010 1.06066 0.92661 0.92952 1.70194 1.37247 1.23691 1.14274 0.85108 0.74730 0.79704 0.79011 1.17892 1.20283 1.17333 1.19869 0.98340 0.91488 0.82471 1.20720 1.03912 1.07315 0.97162 1.22457 0.95090 0.98736 0.89433 1.46316 1.26020 1.35038 1.11139 0.69866 1.76876 1.19113 1.15509 1.02354 1.22243 0.95649 0.97438 0.93358 0.91049 0.91763 0.91783 0.90949 0.91919 0.91701 0.89256 0.91064 0.75960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 9.06 71.98 0.65 -2.85 16 2 C -0.02 -0.91 3.28 -11.35 -0.04 -0.95 16 3 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.13 5.36 5.64 86.42 0.49 5.85 16 5 N -0.65 -30.40 2.93 -826.33 -2.42 -32.82 16 6 C 0.54 32.00 7.62 86.36 0.66 32.65 16 7 O -0.63 -43.05 14.47 -4.32 -0.06 -43.11 16 8 C -0.57 -31.80 8.82 24.83 0.22 -31.58 16 9 H 0.10 4.74 5.84 -2.91 -0.02 4.72 16 10 C 0.03 1.55 5.50 85.31 0.47 2.02 16 11 N -0.82 -50.79 11.84 21.84 0.26 -50.53 16 12 Si 1.00 40.39 29.56 68.60 2.03 42.42 16 13 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 14 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 16 C 0.20 7.45 6.56 85.57 0.56 8.02 16 17 C -0.28 -9.06 5.99 -20.06 -0.12 -9.18 16 18 C 0.09 2.04 11.95 83.28 1.00 3.03 16 19 N -0.47 -10.75 7.37 -58.01 -0.43 -11.18 16 20 H 0.45 6.36 8.96 -213.19 -1.91 4.45 16 21 N -0.32 -10.00 12.56 -47.04 -0.59 -10.59 16 22 C 0.08 2.85 6.48 43.44 0.28 3.13 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 27 H 0.06 2.92 7.03 -2.39 -0.02 2.90 16 28 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 29 H 0.09 3.34 5.68 -2.39 -0.01 3.32 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.22 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -80.64 263.58 2.21 -78.43 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.75 Total: 17.25 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.17 Total: 10.14 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.18 Total: -105.12 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.06 Total: -43.11 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -80.64 2.21 -78.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262185859.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.780 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds