Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40073 * 126.11585 * 2 1 4 4 C 1.30998 * 108.48307 * 180.25252 * 3 2 1 5 5 C 1.50703 * 125.73111 * 179.80367 * 4 3 2 6 6 C 1.52991 * 117.50171 * 163.72303 * 5 4 3 7 7 C 1.52996 * 117.50253 * 95.05518 * 5 4 3 8 8 C 1.39465 * 108.53874 * 359.77376 * 4 3 2 9 9 C 1.36058 * 126.11818 * 179.86252 * 2 1 3 10 10 N 1.38587 * 126.31415 * 0.02562 * 9 2 1 11 11 C 1.34784 * 119.99840 * 179.70850 * 10 9 2 12 12 O 1.21816 * 119.99486 * 359.72168 * 11 10 9 13 13 C 1.41529 * 120.00157 * 179.72417 * 11 10 9 14 14 H 1.08005 * 119.99938 * 359.97438 * 13 11 10 15 15 C 1.40155 * 120.00038 * 180.02562 * 13 11 10 16 16 N 1.30625 * 120.00274 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00000 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47322 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46993 * 120.00062 * 17 15 13 20 20 H 1.48496 * 109.47141 * 239.99785 * 17 15 13 21 21 H 1.09002 * 109.47006 * 270.13427 * 1 2 3 22 22 H 1.08997 * 109.46984 * 30.13607 * 1 2 3 23 23 H 1.09000 * 109.46911 * 150.13468 * 1 2 3 24 24 H 1.09003 * 115.54265 * 309.39254 * 5 4 3 25 25 H 1.09005 * 117.50076 * 359.97438 * 6 5 4 26 26 H 1.09001 * 117.50155 * 145.01807 * 6 5 4 27 27 H 1.08994 * 117.50080 * 214.97978 * 7 5 4 28 28 H 1.09004 * 117.49648 * 359.97438 * 7 5 4 29 29 H 1.08004 * 126.07669 * 179.97438 * 8 4 3 30 30 H 0.97000 * 120.00763 * 359.43254 * 10 9 2 31 31 H 0.96990 * 119.99971 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2907 1.1315 0.0000 4 6 3.5391 0.7347 -0.0055 5 6 4.7484 1.6340 -0.0116 6 6 6.0944 1.0106 0.3629 7 6 5.3929 1.9606 1.3370 8 6 3.5612 -0.6597 -0.0040 9 6 2.2671 -1.0991 0.0026 10 7 1.8488 -2.4203 0.0053 11 6 2.7582 -3.4151 0.0018 12 8 3.9477 -3.1527 -0.0088 13 6 2.3311 -4.7644 0.0104 14 1 1.2765 -4.9969 0.0202 15 6 3.2768 -5.7988 0.0074 16 7 4.5524 -5.5176 -0.0030 17 14 2.7131 -7.5797 0.0195 18 1 1.2290 -7.6291 0.0309 19 1 3.2216 -8.2681 -1.1942 20 1 3.2408 -8.2577 1.2307 21 1 -0.3633 0.0024 1.0277 22 1 -0.3633 0.8887 -0.5159 23 1 -0.3633 -0.8912 -0.5117 24 1 4.7496 2.4148 -0.7722 25 1 6.1053 -0.0500 0.6143 26 1 6.9813 1.3814 -0.1509 27 1 5.8186 2.9560 1.4635 28 1 4.9420 1.5253 2.2288 29 1 4.4440 -1.2818 -0.0078 30 1 0.9016 -2.6293 0.0137 31 1 5.2068 -6.2335 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298266689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = 67.870379 kcal Electronic energy + Delta-G solvation = -16181.276849 eV Core-core repulsion = 13465.507196 eV Total energy + Delta-G solvation = -2715.769653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53731 -37.67298 -36.62233 -33.54094 -32.66524 -31.95945 -28.56619 -26.37466 -26.34064 -22.78157 -22.07553 -21.32113 -19.17788 -19.03895 -17.32249 -16.45379 -15.60357 -15.34264 -14.92447 -14.23363 -13.99473 -13.81644 -13.04594 -12.96951 -12.51639 -12.14312 -11.92293 -11.50453 -11.36457 -11.21490 -11.10771 -10.74820 -10.49580 -10.37356 -10.20347 -9.67547 -9.50329 -8.98451 -8.02914 -7.75818 -6.96504 -6.45694 -4.99575 2.60406 2.95497 3.00312 3.09449 3.13504 3.57287 3.92064 4.26649 4.38806 4.45811 4.90248 5.17236 5.27011 5.33325 5.42241 5.61613 5.65468 5.72666 5.92890 6.08617 6.27510 6.39166 6.52323 6.64738 7.02388 7.11515 7.20104 7.64442 7.73482 7.96838 8.15703 8.51187 8.71877 9.18436 10.29519 10.48706 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.006912 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.927498 B = 4049.774603 C = 4892.256319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.413 5.413 3 N -0.323 5.323 4 C 0.110 3.890 5 C -0.072 4.072 6 C -0.165 4.165 7 C -0.170 4.170 8 C -0.296 4.296 9 C 0.344 3.656 10 N -0.671 5.671 11 C 0.548 3.452 12 O -0.550 6.550 13 C -0.535 4.535 14 H 0.071 0.929 15 C 0.088 3.912 16 N -0.743 5.743 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.175 0.825 30 H 0.389 0.611 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 6.918 0.548 7.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.203 5.203 3 N -0.147 5.147 4 C -0.054 4.054 5 C -0.092 4.092 6 C -0.203 4.203 7 C -0.208 4.208 8 C -0.329 4.329 9 C 0.122 3.878 10 N -0.319 5.319 11 C 0.356 3.644 12 O -0.431 6.431 13 C -0.570 4.570 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.371 5.371 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.198 1.198 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.130 0.870 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.222 0.778 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.694 7.901 0.534 8.738 hybrid contribution -0.600 -1.695 -0.017 1.798 sum -4.294 6.206 0.517 7.564 Atomic orbital electron populations 1.21571 0.75810 1.03495 1.02333 1.48524 1.05362 1.02762 1.63674 1.77165 1.01031 1.05668 1.30837 1.21112 0.91761 0.93489 0.99062 1.20021 0.89723 0.99996 0.99428 1.23032 0.94328 1.00279 1.02612 1.22939 1.03847 1.00283 0.93706 1.21581 0.96621 0.92919 1.21744 1.18640 0.90519 0.81505 0.97128 1.43831 1.10898 1.01115 1.76007 1.17011 0.84759 0.84161 0.78433 1.90590 1.15838 1.82419 1.54285 1.19930 0.94576 0.89346 1.53170 0.91029 1.25752 0.94290 1.01113 0.92404 1.69998 1.01311 1.33997 1.31752 0.86182 0.79891 0.81470 0.78525 1.18571 1.19839 1.19841 0.91790 0.89852 0.90542 0.87016 0.87522 0.88606 0.88837 0.88851 0.80834 0.77818 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.51 11.30 59.85 0.68 2.19 16 2 N -0.41 -8.11 4.05 -67.07 -0.27 -8.38 16 3 N -0.32 -6.70 12.57 33.62 0.42 -6.27 16 4 C 0.11 2.29 6.83 -82.49 -0.56 1.73 16 5 C -0.07 -1.19 6.33 -91.78 -0.58 -1.77 16 6 C -0.17 -2.50 10.02 -26.70 -0.27 -2.76 16 7 C -0.17 -2.43 10.24 -26.69 -0.27 -2.71 16 8 C -0.30 -7.01 8.94 -39.69 -0.36 -7.37 16 9 C 0.34 7.80 7.68 -153.10 -1.18 6.62 16 10 N -0.67 -15.25 5.37 -13.99 -0.08 -15.33 16 11 C 0.55 14.98 7.52 -15.00 -0.11 14.86 16 12 O -0.55 -16.83 11.98 5.08 0.06 -16.77 16 13 C -0.53 -14.13 9.30 -37.61 -0.35 -14.48 16 14 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 16 N -0.74 -20.82 11.73 55.56 0.65 -20.17 16 17 Si 0.92 18.75 29.56 -169.99 -5.02 13.72 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.08 0.91 7.53 -51.93 -0.39 0.51 16 24 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 25 H 0.11 1.86 7.13 -51.93 -0.37 1.49 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.17 4.57 5.13 -52.48 -0.27 4.30 16 30 H 0.39 7.37 7.95 -40.82 -0.32 7.04 16 31 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -33.08 272.97 -6.66 -39.74 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.44 Total: 10.84 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.10 Total: -1.49 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.73 Total: -50.15 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.06 Total: -16.77 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.08 -6.66 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298266689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.610 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds