Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40073 * 126.11585 * 2 1 4 4 C 1.30998 * 108.48307 * 180.25252 * 3 2 1 5 5 C 1.50703 * 125.73111 * 179.80367 * 4 3 2 6 6 C 1.52991 * 117.50171 * 163.72303 * 5 4 3 7 7 C 1.52996 * 117.50253 * 95.05518 * 5 4 3 8 8 C 1.39465 * 108.53874 * 359.77376 * 4 3 2 9 9 C 1.36058 * 126.11818 * 179.86252 * 2 1 3 10 10 N 1.38587 * 126.31415 * 0.02562 * 9 2 1 11 11 C 1.34784 * 119.99840 * 179.70850 * 10 9 2 12 12 O 1.21816 * 119.99486 * 359.72168 * 11 10 9 13 13 C 1.41529 * 120.00157 * 179.72417 * 11 10 9 14 14 H 1.08005 * 119.99938 * 359.97438 * 13 11 10 15 15 C 1.40155 * 120.00038 * 180.02562 * 13 11 10 16 16 N 1.30625 * 120.00274 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00000 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47322 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46993 * 120.00062 * 17 15 13 20 20 H 1.48496 * 109.47141 * 239.99785 * 17 15 13 21 21 H 1.09002 * 109.47006 * 270.13427 * 1 2 3 22 22 H 1.08997 * 109.46984 * 30.13607 * 1 2 3 23 23 H 1.09000 * 109.46911 * 150.13468 * 1 2 3 24 24 H 1.09003 * 115.54265 * 309.39254 * 5 4 3 25 25 H 1.09005 * 117.50076 * 359.97438 * 6 5 4 26 26 H 1.09001 * 117.50155 * 145.01807 * 6 5 4 27 27 H 1.08994 * 117.50080 * 214.97978 * 7 5 4 28 28 H 1.09004 * 117.49648 * 359.97438 * 7 5 4 29 29 H 1.08004 * 126.07669 * 179.97438 * 8 4 3 30 30 H 0.97000 * 120.00763 * 359.43254 * 10 9 2 31 31 H 0.96990 * 119.99971 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2907 1.1315 0.0000 4 6 3.5391 0.7347 -0.0055 5 6 4.7484 1.6340 -0.0116 6 6 6.0944 1.0106 0.3629 7 6 5.3929 1.9606 1.3370 8 6 3.5612 -0.6597 -0.0040 9 6 2.2671 -1.0991 0.0026 10 7 1.8488 -2.4203 0.0053 11 6 2.7582 -3.4151 0.0018 12 8 3.9477 -3.1527 -0.0088 13 6 2.3311 -4.7644 0.0104 14 1 1.2765 -4.9969 0.0202 15 6 3.2768 -5.7988 0.0074 16 7 4.5524 -5.5176 -0.0030 17 14 2.7131 -7.5797 0.0195 18 1 1.2290 -7.6291 0.0309 19 1 3.2216 -8.2681 -1.1942 20 1 3.2408 -8.2577 1.2307 21 1 -0.3633 0.0024 1.0277 22 1 -0.3633 0.8887 -0.5159 23 1 -0.3633 -0.8912 -0.5117 24 1 4.7496 2.4148 -0.7722 25 1 6.1053 -0.0500 0.6143 26 1 6.9813 1.3814 -0.1509 27 1 5.8186 2.9560 1.4635 28 1 4.9420 1.5253 2.2288 29 1 4.4440 -1.2818 -0.0078 30 1 0.9016 -2.6293 0.0137 31 1 5.2068 -6.2335 -0.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298266689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = 45.355489 kcal Electronic energy + Delta-G solvation = -16182.253168 eV Core-core repulsion = 13465.507196 eV Total energy + Delta-G solvation = -2716.745972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19665 -39.61005 -37.96000 -35.42613 -34.59289 -33.52358 -30.40045 -28.31789 -27.69100 -24.28134 -23.37049 -23.02564 -20.82963 -20.80756 -19.07481 -18.18520 -17.53144 -16.74822 -16.39916 -15.96101 -15.57476 -15.20269 -14.86624 -14.65209 -14.19829 -13.55554 -13.33667 -13.23690 -12.87002 -12.79125 -12.75486 -12.31105 -12.03244 -11.92749 -11.63346 -11.26506 -11.04346 -10.92533 -9.86734 -9.57163 -8.80071 -8.42564 -7.07038 0.92818 1.38775 1.40759 1.47643 1.60610 1.86286 2.21182 2.43324 2.79253 2.99007 3.51884 3.59730 3.98019 4.04258 4.12450 4.37780 4.40797 4.58169 4.72291 4.79404 4.81355 5.00265 5.18025 5.25356 5.28796 5.34832 5.46801 5.78925 5.95259 6.05795 6.38641 6.69740 6.82746 7.31339 8.31033 8.51130 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.006912 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.927498 B = 4049.774603 C = 4892.256319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.405 5.405 3 N -0.325 5.325 4 C 0.110 3.890 5 C -0.092 4.092 6 C -0.166 4.166 7 C -0.148 4.148 8 C -0.329 4.329 9 C 0.327 3.673 10 N -0.661 5.661 11 C 0.530 3.470 12 O -0.595 6.595 13 C -0.556 4.556 14 H 0.096 0.904 15 C 0.032 3.968 16 N -0.796 5.796 17 Si 1.005 2.995 18 H -0.244 1.244 19 H -0.267 1.267 20 H -0.268 1.268 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.136 0.864 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.407 0.593 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 7.161 0.586 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.195 5.195 3 N -0.148 5.148 4 C -0.055 4.055 5 C -0.112 4.112 6 C -0.204 4.204 7 C -0.186 4.186 8 C -0.362 4.362 9 C 0.104 3.896 10 N -0.309 5.309 11 C 0.340 3.660 12 O -0.480 6.480 13 C -0.591 4.591 14 H 0.115 0.885 15 C -0.187 4.187 16 N -0.424 5.424 17 Si 0.824 3.176 18 H -0.166 1.166 19 H -0.192 1.192 20 H -0.192 1.192 21 H 0.102 0.898 22 H 0.123 0.877 23 H 0.115 0.885 24 H 0.153 0.847 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.243 0.757 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.422 8.189 0.574 9.838 hybrid contribution -0.119 -1.691 -0.021 1.696 sum -5.541 6.497 0.553 8.557 Atomic orbital electron populations 1.22080 0.72300 1.05629 1.04352 1.48866 1.07141 1.01245 1.62208 1.77100 1.01059 1.06168 1.30521 1.21561 0.93124 0.92702 0.98095 1.20273 0.88624 1.00449 1.01832 1.23031 0.95034 0.98764 1.03544 1.23026 1.02084 1.01633 0.91836 1.21435 0.96369 0.94436 1.23940 1.18616 0.91114 0.82107 0.97757 1.43311 1.11273 1.00694 1.75625 1.17453 0.84754 0.85523 0.78291 1.90580 1.17851 1.83397 1.56203 1.20472 0.96122 0.89356 1.53130 0.88544 1.27043 0.93990 1.06684 0.90956 1.70150 1.03208 1.36260 1.32790 0.84855 0.80199 0.73927 0.78666 1.16640 1.19229 1.19242 0.89772 0.87685 0.88549 0.84658 0.91032 0.85473 0.84950 0.90465 0.84422 0.75680 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 11.30 127.77 1.44 3.85 16 2 N -0.40 -15.55 4.05 -366.10 -1.48 -17.03 16 3 N -0.32 -13.22 12.57 -47.55 -0.60 -13.82 16 4 C 0.11 4.63 6.83 42.98 0.29 4.92 16 5 C -0.09 -3.00 6.33 -11.54 -0.07 -3.07 16 6 C -0.17 -5.04 10.02 30.62 0.31 -4.74 16 7 C -0.15 -4.04 10.24 30.62 0.31 -3.72 16 8 C -0.33 -16.38 8.94 22.20 0.20 -16.18 16 9 C 0.33 15.13 7.68 131.49 1.01 16.14 16 10 N -0.66 -30.48 5.37 -316.33 -1.70 -32.18 16 11 C 0.53 29.98 7.52 85.05 0.64 30.62 16 12 O -0.60 -38.60 11.98 -4.72 -0.06 -38.66 16 13 C -0.56 -29.55 9.30 23.55 0.22 -29.33 16 14 H 0.10 4.46 7.85 -2.91 -0.02 4.44 16 15 C 0.03 1.68 5.50 85.34 0.47 2.15 16 16 N -0.80 -46.03 11.73 21.85 0.26 -45.77 16 17 Si 1.00 37.91 29.56 68.60 2.03 39.94 16 18 H -0.24 -8.39 7.11 99.48 0.71 -7.68 16 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.10 2.03 7.53 -2.39 -0.02 2.01 16 24 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 25 H 0.07 2.69 7.13 -2.38 -0.02 2.67 16 26 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.14 7.90 5.13 -2.91 -0.01 7.89 16 30 H 0.41 15.16 7.95 -92.71 -0.74 14.42 16 31 H 0.28 14.57 8.29 -92.72 -0.77 13.81 16 Total: -1.00 -75.55 272.97 3.69 -71.85 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.43 Total: 35.02 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.82 Total: 0.65 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.52 Total: -108.80 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.06 Total: -38.66 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -75.55 3.69 -71.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298266689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.207 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds