Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27569 * 126.41615 * 2 1 4 4 N 1.39142 * 113.16484 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.43986 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47473 * 270.02905 * 5 4 3 7 7 C 1.47194 * 109.47306 * 179.97438 * 6 5 4 8 8 N 6.83554 * 143.59206 * 339.19698 * 2 1 3 9 9 C 1.34961 * 111.12343 * 0.26750 * 4 3 2 10 10 O 1.21298 * 127.50024 * 179.70885 * 9 4 3 11 11 C 1.51444 * 126.41636 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.60480 * 61.36646 * 11 2 1 13 13 C 1.53000 * 110.60619 * 298.55322 * 11 2 1 14 14 C 1.50698 * 109.47009 * 175.00070 * 13 11 2 15 15 H 1.08006 * 119.99623 * 359.97438 * 14 13 11 16 16 C 1.37873 * 120.00600 * 179.97438 * 14 13 11 17 17 N 1.31525 * 119.99240 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00497 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47089 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47159 * 120.00143 * 18 16 14 21 21 H 1.48505 * 109.46860 * 239.99870 * 18 16 14 22 22 H 1.08995 * 109.46991 * 0.02883 * 1 2 3 23 23 H 1.08999 * 109.46910 * 120.02476 * 1 2 3 24 24 H 1.08993 * 109.47370 * 240.02189 * 1 2 3 25 25 H 1.09002 * 109.47129 * 150.02648 * 5 4 3 26 26 H 1.08998 * 109.46845 * 30.03454 * 5 4 3 27 27 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 28 28 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 29 29 H 1.08999 * 109.47369 * 294.99926 * 13 11 2 30 30 H 1.08996 * 109.47263 * 55.00124 * 13 11 2 31 31 H 0.96996 * 119.99491 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6938 0.0002 6 6 5.0792 2.0366 -1.4424 7 6 6.1673 3.0279 -1.4428 8 7 7.0084 3.7926 -1.4409 9 6 3.8036 -0.6292 -0.0049 10 8 4.8580 -1.2289 -0.0108 11 6 2.4061 -1.2187 0.0005 12 1 2.2404 -1.8180 -0.8946 13 6 2.1749 -2.0578 1.2588 14 6 2.9896 -3.3229 1.1757 15 1 3.6099 -3.5098 0.3115 16 6 2.9432 -4.2416 2.2026 17 7 2.1874 -4.0141 3.2547 18 14 3.9536 -5.8094 2.0998 19 1 4.7126 -5.8263 0.8235 20 1 4.9021 -5.8627 3.2411 21 1 3.0488 -6.9857 2.1528 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3633 -0.5142 -0.8898 24 1 -0.3634 -0.5135 0.8901 25 1 5.5699 1.2804 0.5141 26 1 4.3718 2.5966 0.5138 27 1 4.2114 2.4501 -1.9564 28 1 5.4096 1.1337 -1.9560 29 1 2.4782 -1.4874 2.1368 30 1 1.1177 -2.3110 1.3375 31 1 2.1545 -4.6606 3.9771 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319112694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = 36.080813 kcal Electronic energy + Delta-G solvation = -15991.361092 eV Core-core repulsion = 13274.212940 eV Total energy + Delta-G solvation = -2717.148152 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83948 -37.06334 -36.87238 -34.76668 -33.14505 -31.28561 -30.42366 -27.93276 -26.19434 -24.03570 -22.18737 -20.22365 -19.04799 -17.88129 -16.59240 -16.14011 -15.49748 -15.33635 -14.60365 -14.47306 -14.08363 -13.65815 -13.31955 -13.18140 -12.71920 -12.66729 -12.37107 -12.18176 -12.10490 -11.60984 -11.45151 -11.21256 -11.18257 -10.90160 -10.62468 -10.28760 -9.59288 -9.42193 -8.87828 -8.41404 -8.27979 -6.06924 -4.08388 2.08808 2.40537 2.63073 2.78172 3.13390 3.31432 3.39397 3.46313 3.91823 4.36139 4.43388 4.67087 4.83990 4.90330 5.21583 5.30284 5.39516 5.53964 5.67580 5.72803 5.82173 5.93250 6.08507 6.29441 6.53655 6.73770 7.37151 7.38560 7.42077 7.91397 8.07723 8.23939 8.42884 8.97035 9.56592 11.04331 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.006686 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.514720 B = 4186.755004 C = 5018.358403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.107 3.893 3 N -0.260 5.260 4 N -0.485 5.485 5 C 0.151 3.849 6 C -0.045 4.045 7 C 0.216 3.784 8 N -0.438 5.438 9 C 0.511 3.489 10 O -0.482 6.482 11 C -0.132 4.132 12 H 0.123 0.877 13 C 0.054 3.946 14 C -0.516 4.516 15 H 0.065 0.935 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.020 0.980 30 H 0.039 0.961 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 9.154 -7.814 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 N -0.067 5.067 4 N -0.306 5.306 5 C 0.027 3.973 6 C -0.087 4.087 7 C -0.102 4.102 8 N -0.115 5.115 9 C 0.299 3.701 10 O -0.352 6.352 11 C -0.156 4.156 12 H 0.141 0.859 13 C 0.016 3.984 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.558 10.951 -7.648 13.447 hybrid contribution 0.386 -1.934 0.082 1.974 sum -1.172 9.017 -7.566 11.829 Atomic orbital electron populations 1.20332 0.85275 1.03569 1.04290 1.25481 0.97336 0.91855 0.93848 1.74544 0.88737 1.26801 1.16568 1.49706 1.02654 1.06169 1.72108 1.21096 0.88935 0.93029 0.94245 1.19743 0.92942 0.95297 1.00674 1.28943 0.94044 0.93810 0.93451 1.81258 1.10984 1.11054 1.08175 1.21491 0.92118 0.81773 0.74742 1.90733 1.31150 1.65789 1.47487 1.22078 0.90538 0.96439 1.06520 0.85927 1.18913 0.98625 0.93270 0.87605 1.21208 1.26336 1.02832 1.04999 0.91727 1.24955 0.95465 0.98552 0.95201 1.69960 1.39455 1.36130 1.08103 0.86478 0.80079 0.82904 0.78288 1.19530 1.21048 1.21020 0.90593 0.89612 0.88881 0.88601 0.88769 0.86697 0.86966 0.96193 0.94312 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.47 36.01 0.38 -0.44 16 2 C 0.11 1.61 6.93 -78.72 -0.55 1.06 16 3 N -0.26 -3.94 12.02 35.53 0.43 -3.52 16 4 N -0.49 -7.74 3.54 -59.89 -0.21 -7.95 16 5 C 0.15 1.84 6.19 -4.04 -0.03 1.81 16 6 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 7 C 0.22 2.46 15.44 -20.74 -0.32 2.14 16 8 N -0.44 -6.16 18.54 42.18 0.78 -5.38 16 9 C 0.51 10.09 7.60 -10.42 -0.08 10.01 16 10 O -0.48 -11.10 17.05 5.54 0.09 -11.01 16 11 C -0.13 -2.48 2.95 -92.08 -0.27 -2.76 16 12 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 13 C 0.05 1.28 4.49 -27.88 -0.13 1.15 16 14 C -0.52 -14.01 8.46 -34.44 -0.29 -14.30 16 15 H 0.06 1.79 7.44 -52.48 -0.39 1.40 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 25 H 0.10 1.23 8.04 -51.93 -0.42 0.81 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.04 0.91 8.01 -51.93 -0.42 0.49 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -32.95 286.13 -4.17 -37.12 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -3.73 Total: -4.67 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.56 Total: -0.38 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.73 Total: -42.02 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.95 -4.17 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319112694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.200 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds