Wall clock time and date at job start Sun Mar 29 2020 22:09:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47141 * 2 1
4 4 C 1.50704 * 109.46968 * 119.99633 * 2 1 3
5 5 H 1.07998 * 119.99616 * 115.09446 * 4 2 1
6 6 C 1.37873 * 120.00172 * 295.09457 * 4 2 1
7 7 N 1.31515 * 119.99911 * 155.93120 * 6 4 2
8 8 Si 1.86801 * 120.00266 * 335.93306 * 6 4 2
9 9 H 1.48495 * 109.47142 * 269.06016 * 8 6 4
10 10 H 1.48506 * 109.46666 * 29.05932 * 8 6 4
11 11 H 1.48495 * 109.47139 * 149.05704 * 8 6 4
12 12 C 1.50699 * 109.47167 * 239.99926 * 2 1 3
13 13 O 1.21280 * 119.99566 * 276.03417 * 12 2 1
14 14 N 1.34769 * 119.99999 * 96.03471 * 12 2 1
15 15 C 1.46612 * 126.39217 * 185.88165 * 14 12 2
16 16 C 1.50729 * 107.76350 * 180.02562 * 15 14 12
17 17 C 1.35428 * 143.40140 * 180.02562 * 16 15 14
18 18 N 1.34909 * 107.74174 * 179.97438 * 17 16 15
19 19 H 0.97000 * 126.03917 * 179.97438 * 18 17 16
20 20 N 1.40046 * 107.93244 * 359.97438 * 18 17 16
21 21 C 1.31012 * 108.20665 * 359.97438 * 20 18 17
22 22 C 1.46605 * 126.39640 * 5.56876 * 14 12 2
23 23 H 1.09007 * 109.47072 * 294.22127 * 1 2 3
24 24 H 1.09000 * 109.47697 * 54.22419 * 1 2 3
25 25 H 1.09004 * 109.47536 * 174.22271 * 1 2 3
26 26 H 0.97000 * 120.00236 * 179.97438 * 7 6 4
27 27 H 1.08996 * 109.80432 * 299.56586 * 15 14 12
28 28 H 1.09004 * 109.80348 * 60.38005 * 15 14 12
29 29 H 1.08005 * 126.12581 * 359.97156 * 17 16 15
30 30 H 1.08997 * 109.80414 * 299.57363 * 22 14 12
31 31 H 1.09004 * 109.79591 * 60.43239 * 22 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.5862 -1.6323 1.1334
6 6 1.7846 -0.1832 2.4802
7 7 1.7780 -0.9681 3.5355
8 14 1.4584 1.6458 2.6746
9 1 2.7398 2.3532 2.9252
10 1 0.8368 2.1723 1.4330
11 1 0.5394 1.8657 3.8201
12 6 2.0323 -0.7104 -1.2304
13 8 2.1303 -1.9192 -1.2351
14 7 2.3726 -0.0025 -2.3256
15 6 2.7596 -0.5497 -3.6295
16 6 3.0526 0.6103 -4.5464
17 6 3.4371 0.9315 -5.8045
18 7 3.4810 2.2772 -5.8901
19 1 3.7256 2.7914 -6.6754
20 7 3.1111 2.8007 -4.6449
21 6 2.8535 1.7995 -3.8401
22 6 2.4188 1.4586 -2.4372
23 1 -0.3633 0.4216 0.9373
24 1 -0.3634 0.6008 -0.8337
25 1 -0.3634 -1.0225 -0.1034
26 1 1.6042 -0.5973 4.4147
27 1 3.6505 -1.1681 -3.5208
28 1 1.9433 -1.1465 -4.0365
29 1 3.6674 0.2351 -6.5973
30 1 1.4304 1.8752 -2.2433
31 1 3.1365 1.8610 -1.7223
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001328396565.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:09:00
Heat of formation + Delta-G solvation = 64.389688 kcal
Electronic energy + Delta-G solvation = -16336.347397 eV
Core-core repulsion = 13620.426810 eV
Total energy + Delta-G solvation = -2715.920587 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.74319 -39.02788 -36.17731 -33.72343 -31.55590 -31.31607 -30.36614 -27.56121
-25.92842 -25.15836 -22.22422 -20.50405 -20.09518 -18.69024 -17.60849 -16.85936
-16.10344 -15.78436 -15.33535 -14.42889 -14.15611 -13.79921 -13.30653 -12.96958
-12.79084 -12.51378 -12.42945 -12.15706 -11.97130 -11.39616 -10.93130 -10.65337
-10.56602 -10.44264 -9.75004 -9.65998 -9.38260 -8.87352 -8.80031 -8.30865
-8.03932 -6.13913 -4.03126 1.66049 2.49828 2.51755 3.27274 3.36516
3.38667 3.40764 3.51899 3.80332 4.40997 4.60530 5.01989 5.14100
5.38501 5.57404 5.62343 5.66634 5.79453 5.84429 5.98716 6.26365
6.29542 6.48880 6.58016 6.64645 6.96561 7.06137 7.26098 7.44764
7.61373 8.03108 8.47988 9.00117 9.07652 9.51943 10.98733
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.039236 B = 0.006831 C = 0.006149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.467281 B = 4097.822835 C = 4552.668956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.010 3.990
3 H 0.040 0.960
4 C -0.520 4.520
5 H 0.084 0.916
6 C 0.083 3.917
7 N -0.875 5.875
8 Si 0.855 3.145
9 H -0.277 1.277
10 H -0.258 1.258
11 H -0.286 1.286
12 C 0.558 3.442
13 O -0.527 6.527
14 N -0.628 5.628
15 C 0.190 3.810
16 C -0.267 4.267
17 C 0.085 3.915
18 N -0.475 5.475
19 H 0.443 0.557
20 N -0.265 5.265
21 C 0.055 3.945
22 C 0.196 3.804
23 H 0.056 0.944
24 H 0.026 0.974
25 H 0.055 0.945
26 H 0.265 0.735
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.182 0.818
30 H 0.090 0.910
31 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.631 7.308 -18.028 19.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.012 4.012
3 H 0.058 0.942
4 C -0.557 4.557
5 H 0.102 0.898
6 C -0.120 4.120
7 N -0.511 5.511
8 Si 0.681 3.319
9 H -0.203 1.203
10 H -0.182 1.182
11 H -0.212 1.212
12 C 0.349 3.651
13 O -0.400 6.400
14 N -0.367 5.367
15 C 0.066 3.934
16 C -0.279 4.279
17 C -0.062 4.062
18 N -0.184 5.184
19 H 0.288 0.712
20 N -0.089 5.089
21 C -0.114 4.114
22 C 0.070 3.930
23 H 0.075 0.925
24 H 0.045 0.955
25 H 0.074 0.926
26 H 0.075 0.925
27 H 0.091 0.909
28 H 0.089 0.911
29 H 0.199 0.801
30 H 0.108 0.892
31 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 1.677 7.781 -17.813 19.511
hybrid contribution 0.080 0.496 -0.335 0.603
sum 1.757 8.277 -18.148 20.024
Atomic orbital electron populations
1.21972 0.96212 1.01008 0.99749 1.19213 0.94055 0.96590 0.91322
0.94170 1.20672 1.37368 1.10199 0.87443 0.89800 1.24857 0.94070
0.97393 0.95714 1.70076 1.46768 1.34732 0.99508 0.87205 0.78615
0.87654 0.78432 1.20267 1.18187 1.21159 1.21161 0.74762 0.87335
0.81794 1.90605 1.53016 1.14530 1.81883 1.48422 1.71062 1.05577
1.11595 1.19297 1.00282 0.92022 0.81792 1.20806 1.14536 0.97617
0.94966 1.21475 1.01081 0.86035 0.97602 1.46454 1.55563 1.04580
1.11814 0.71206 1.77084 1.22086 1.19405 0.90299 1.22896 0.99020
0.91798 0.97636 1.19431 1.02239 0.82720 0.88585 0.92460 0.95465
0.92630 0.92520 0.90938 0.91094 0.80143 0.89225 0.89045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.83 8.69 37.16 0.32 -2.51 16
2 C 0.01 0.23 1.93 -92.92 -0.18 0.06 16
3 H 0.04 0.89 5.35 -51.93 -0.28 0.61 16
4 C -0.52 -14.81 8.70 -34.44 -0.30 -15.11 16
5 H 0.08 2.71 7.47 -52.49 -0.39 2.32 16
6 C 0.08 2.37 5.19 -17.82 -0.09 2.27 16
7 N -0.88 -26.43 13.96 55.43 0.77 -25.65 16
8 Si 0.86 20.29 26.08 -169.99 -4.43 15.86 16
9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
10 H -0.26 -5.62 6.06 56.52 0.34 -5.28 16
11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
12 C 0.56 12.58 6.83 -10.99 -0.08 12.51 16
13 O -0.53 -13.70 16.49 5.56 0.09 -13.61 16
14 N -0.63 -11.40 3.33 -176.20 -0.59 -11.99 16
15 C 0.19 2.90 6.89 -5.12 -0.04 2.86 16
16 C -0.27 -3.51 6.96 -105.05 -0.73 -4.24 16
17 C 0.09 0.80 12.00 -17.20 -0.21 0.59 16
18 N -0.48 -4.51 7.35 30.46 0.22 -4.28 16
19 H 0.44 2.42 8.96 -182.64 -1.64 0.78 16
20 N -0.27 -3.61 12.71 33.69 0.43 -3.18 16
21 C 0.05 0.79 8.19 -82.34 -0.67 0.12 16
22 C 0.20 3.03 5.98 -5.10 -0.03 3.00 16
23 H 0.06 1.25 5.87 -51.92 -0.30 0.95 16
24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16
25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16
30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
31 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16
LS Contribution 264.27 15.07 3.98 3.98
Total: -1.00 -34.56 264.27 -6.28 -40.84
By element:
Atomic # 1 Polarization: 3.24 SS G_CDS: -4.76 Total: -1.52 kcal
Atomic # 6 Polarization: 1.55 SS G_CDS: -2.00 Total: -0.45 kcal
Atomic # 7 Polarization: -45.95 SS G_CDS: 0.84 Total: -45.11 kcal
Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal
Atomic # 14 Polarization: 20.29 SS G_CDS: -4.43 Total: 15.86 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -34.56 -6.28 -40.84 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328396565.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.231 kcal
(2) G-P(sol) polarization free energy of solvation -34.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds