Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50704 * 109.46968 * 119.99633 * 2 1 3 5 5 H 1.07998 * 119.99616 * 115.09446 * 4 2 1 6 6 C 1.37873 * 120.00172 * 295.09457 * 4 2 1 7 7 N 1.31515 * 119.99911 * 155.93120 * 6 4 2 8 8 Si 1.86801 * 120.00266 * 335.93306 * 6 4 2 9 9 H 1.48495 * 109.47142 * 269.06016 * 8 6 4 10 10 H 1.48506 * 109.46666 * 29.05932 * 8 6 4 11 11 H 1.48495 * 109.47139 * 149.05704 * 8 6 4 12 12 C 1.50699 * 109.47167 * 239.99926 * 2 1 3 13 13 O 1.21280 * 119.99566 * 276.03417 * 12 2 1 14 14 N 1.34769 * 119.99999 * 96.03471 * 12 2 1 15 15 C 1.46612 * 126.39217 * 185.88165 * 14 12 2 16 16 C 1.50729 * 107.76350 * 180.02562 * 15 14 12 17 17 C 1.35428 * 143.40140 * 180.02562 * 16 15 14 18 18 N 1.34909 * 107.74174 * 179.97438 * 17 16 15 19 19 H 0.97000 * 126.03917 * 179.97438 * 18 17 16 20 20 N 1.40046 * 107.93244 * 359.97438 * 18 17 16 21 21 C 1.31012 * 108.20665 * 359.97438 * 20 18 17 22 22 C 1.46605 * 126.39640 * 5.56876 * 14 12 2 23 23 H 1.09007 * 109.47072 * 294.22127 * 1 2 3 24 24 H 1.09000 * 109.47697 * 54.22419 * 1 2 3 25 25 H 1.09004 * 109.47536 * 174.22271 * 1 2 3 26 26 H 0.97000 * 120.00236 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.80432 * 299.56586 * 15 14 12 28 28 H 1.09004 * 109.80348 * 60.38005 * 15 14 12 29 29 H 1.08005 * 126.12581 * 359.97156 * 17 16 15 30 30 H 1.08997 * 109.80414 * 299.57363 * 22 14 12 31 31 H 1.09004 * 109.79591 * 60.43239 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.5862 -1.6323 1.1334 6 6 1.7846 -0.1832 2.4802 7 7 1.7780 -0.9681 3.5355 8 14 1.4584 1.6458 2.6746 9 1 2.7398 2.3532 2.9252 10 1 0.8368 2.1723 1.4330 11 1 0.5394 1.8657 3.8201 12 6 2.0323 -0.7104 -1.2304 13 8 2.1303 -1.9192 -1.2351 14 7 2.3726 -0.0025 -2.3256 15 6 2.7596 -0.5497 -3.6295 16 6 3.0526 0.6103 -4.5464 17 6 3.4371 0.9315 -5.8045 18 7 3.4810 2.2772 -5.8901 19 1 3.7256 2.7914 -6.6754 20 7 3.1111 2.8007 -4.6449 21 6 2.8535 1.7995 -3.8401 22 6 2.4188 1.4586 -2.4372 23 1 -0.3633 0.4216 0.9373 24 1 -0.3634 0.6008 -0.8337 25 1 -0.3634 -1.0225 -0.1034 26 1 1.6042 -0.5973 4.4147 27 1 3.6505 -1.1681 -3.5208 28 1 1.9433 -1.1465 -4.0365 29 1 3.6674 0.2351 -6.5973 30 1 1.4304 1.8752 -2.2433 31 1 3.1365 1.8610 -1.7223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328396565.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = 64.389688 kcal Electronic energy + Delta-G solvation = -16336.347397 eV Core-core repulsion = 13620.426810 eV Total energy + Delta-G solvation = -2715.920587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74319 -39.02788 -36.17731 -33.72343 -31.55590 -31.31607 -30.36614 -27.56121 -25.92842 -25.15836 -22.22422 -20.50405 -20.09518 -18.69024 -17.60849 -16.85936 -16.10344 -15.78436 -15.33535 -14.42889 -14.15611 -13.79921 -13.30653 -12.96958 -12.79084 -12.51378 -12.42945 -12.15706 -11.97130 -11.39616 -10.93130 -10.65337 -10.56602 -10.44264 -9.75004 -9.65998 -9.38260 -8.87352 -8.80031 -8.30865 -8.03932 -6.13913 -4.03126 1.66049 2.49828 2.51755 3.27274 3.36516 3.38667 3.40764 3.51899 3.80332 4.40997 4.60530 5.01989 5.14100 5.38501 5.57404 5.62343 5.66634 5.79453 5.84429 5.98716 6.26365 6.29542 6.48880 6.58016 6.64645 6.96561 7.06137 7.26098 7.44764 7.61373 8.03108 8.47988 9.00117 9.07652 9.51943 10.98733 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.006831 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.467281 B = 4097.822835 C = 4552.668956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.010 3.990 3 H 0.040 0.960 4 C -0.520 4.520 5 H 0.084 0.916 6 C 0.083 3.917 7 N -0.875 5.875 8 Si 0.855 3.145 9 H -0.277 1.277 10 H -0.258 1.258 11 H -0.286 1.286 12 C 0.558 3.442 13 O -0.527 6.527 14 N -0.628 5.628 15 C 0.190 3.810 16 C -0.267 4.267 17 C 0.085 3.915 18 N -0.475 5.475 19 H 0.443 0.557 20 N -0.265 5.265 21 C 0.055 3.945 22 C 0.196 3.804 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.090 0.910 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 7.308 -18.028 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.012 4.012 3 H 0.058 0.942 4 C -0.557 4.557 5 H 0.102 0.898 6 C -0.120 4.120 7 N -0.511 5.511 8 Si 0.681 3.319 9 H -0.203 1.203 10 H -0.182 1.182 11 H -0.212 1.212 12 C 0.349 3.651 13 O -0.400 6.400 14 N -0.367 5.367 15 C 0.066 3.934 16 C -0.279 4.279 17 C -0.062 4.062 18 N -0.184 5.184 19 H 0.288 0.712 20 N -0.089 5.089 21 C -0.114 4.114 22 C 0.070 3.930 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.199 0.801 30 H 0.108 0.892 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.677 7.781 -17.813 19.511 hybrid contribution 0.080 0.496 -0.335 0.603 sum 1.757 8.277 -18.148 20.024 Atomic orbital electron populations 1.21972 0.96212 1.01008 0.99749 1.19213 0.94055 0.96590 0.91322 0.94170 1.20672 1.37368 1.10199 0.87443 0.89800 1.24857 0.94070 0.97393 0.95714 1.70076 1.46768 1.34732 0.99508 0.87205 0.78615 0.87654 0.78432 1.20267 1.18187 1.21159 1.21161 0.74762 0.87335 0.81794 1.90605 1.53016 1.14530 1.81883 1.48422 1.71062 1.05577 1.11595 1.19297 1.00282 0.92022 0.81792 1.20806 1.14536 0.97617 0.94966 1.21475 1.01081 0.86035 0.97602 1.46454 1.55563 1.04580 1.11814 0.71206 1.77084 1.22086 1.19405 0.90299 1.22896 0.99020 0.91798 0.97636 1.19431 1.02239 0.82720 0.88585 0.92460 0.95465 0.92630 0.92520 0.90938 0.91094 0.80143 0.89225 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.69 37.16 0.32 -2.51 16 2 C 0.01 0.23 1.93 -92.92 -0.18 0.06 16 3 H 0.04 0.89 5.35 -51.93 -0.28 0.61 16 4 C -0.52 -14.81 8.70 -34.44 -0.30 -15.11 16 5 H 0.08 2.71 7.47 -52.49 -0.39 2.32 16 6 C 0.08 2.37 5.19 -17.82 -0.09 2.27 16 7 N -0.88 -26.43 13.96 55.43 0.77 -25.65 16 8 Si 0.86 20.29 26.08 -169.99 -4.43 15.86 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.26 -5.62 6.06 56.52 0.34 -5.28 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.56 12.58 6.83 -10.99 -0.08 12.51 16 13 O -0.53 -13.70 16.49 5.56 0.09 -13.61 16 14 N -0.63 -11.40 3.33 -176.20 -0.59 -11.99 16 15 C 0.19 2.90 6.89 -5.12 -0.04 2.86 16 16 C -0.27 -3.51 6.96 -105.05 -0.73 -4.24 16 17 C 0.09 0.80 12.00 -17.20 -0.21 0.59 16 18 N -0.48 -4.51 7.35 30.46 0.22 -4.28 16 19 H 0.44 2.42 8.96 -182.64 -1.64 0.78 16 20 N -0.27 -3.61 12.71 33.69 0.43 -3.18 16 21 C 0.05 0.79 8.19 -82.34 -0.67 0.12 16 22 C 0.20 3.03 5.98 -5.10 -0.03 3.00 16 23 H 0.06 1.25 5.87 -51.92 -0.30 0.95 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -34.56 264.27 -6.28 -40.84 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.76 Total: -1.52 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.00 Total: -0.45 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.84 Total: -45.11 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.43 Total: 15.86 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.56 -6.28 -40.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328396565.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.231 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds