Wall clock time and date at job start Sun Mar 29 2020 22:09:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47141 * 2 1
4 4 C 1.50704 * 109.46968 * 119.99633 * 2 1 3
5 5 H 1.07998 * 119.99616 * 115.09446 * 4 2 1
6 6 C 1.37873 * 120.00172 * 295.09457 * 4 2 1
7 7 N 1.31515 * 119.99911 * 155.93120 * 6 4 2
8 8 Si 1.86801 * 120.00266 * 335.93306 * 6 4 2
9 9 H 1.48495 * 109.47142 * 269.06016 * 8 6 4
10 10 H 1.48506 * 109.46666 * 29.05932 * 8 6 4
11 11 H 1.48495 * 109.47139 * 149.05704 * 8 6 4
12 12 C 1.50699 * 109.47167 * 239.99926 * 2 1 3
13 13 O 1.21280 * 119.99566 * 276.03417 * 12 2 1
14 14 N 1.34769 * 119.99999 * 96.03471 * 12 2 1
15 15 C 1.46612 * 126.39217 * 185.88165 * 14 12 2
16 16 C 1.50729 * 107.76350 * 180.02562 * 15 14 12
17 17 C 1.35428 * 143.40140 * 180.02562 * 16 15 14
18 18 N 1.34909 * 107.74174 * 179.97438 * 17 16 15
19 19 H 0.97000 * 126.03917 * 179.97438 * 18 17 16
20 20 N 1.40046 * 107.93244 * 359.97438 * 18 17 16
21 21 C 1.31012 * 108.20665 * 359.97438 * 20 18 17
22 22 C 1.46605 * 126.39640 * 5.56876 * 14 12 2
23 23 H 1.09007 * 109.47072 * 294.22127 * 1 2 3
24 24 H 1.09000 * 109.47697 * 54.22419 * 1 2 3
25 25 H 1.09004 * 109.47536 * 174.22271 * 1 2 3
26 26 H 0.97000 * 120.00236 * 179.97438 * 7 6 4
27 27 H 1.08996 * 109.80432 * 299.56586 * 15 14 12
28 28 H 1.09004 * 109.80348 * 60.38005 * 15 14 12
29 29 H 1.08005 * 126.12581 * 359.97156 * 17 16 15
30 30 H 1.08997 * 109.80414 * 299.57363 * 22 14 12
31 31 H 1.09004 * 109.79591 * 60.43239 * 22 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.5862 -1.6323 1.1334
6 6 1.7846 -0.1832 2.4802
7 7 1.7780 -0.9681 3.5355
8 14 1.4584 1.6458 2.6746
9 1 2.7398 2.3532 2.9252
10 1 0.8368 2.1723 1.4330
11 1 0.5394 1.8657 3.8201
12 6 2.0323 -0.7104 -1.2304
13 8 2.1303 -1.9192 -1.2351
14 7 2.3726 -0.0025 -2.3256
15 6 2.7596 -0.5497 -3.6295
16 6 3.0526 0.6103 -4.5464
17 6 3.4371 0.9315 -5.8045
18 7 3.4810 2.2772 -5.8901
19 1 3.7256 2.7914 -6.6754
20 7 3.1111 2.8007 -4.6449
21 6 2.8535 1.7995 -3.8401
22 6 2.4188 1.4586 -2.4372
23 1 -0.3633 0.4216 0.9373
24 1 -0.3634 0.6008 -0.8337
25 1 -0.3634 -1.0225 -0.1034
26 1 1.6042 -0.5973 4.4147
27 1 3.6505 -1.1681 -3.5208
28 1 1.9433 -1.1465 -4.0365
29 1 3.6674 0.2351 -6.5973
30 1 1.4304 1.8752 -2.2433
31 1 3.1365 1.8610 -1.7223
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001328396565.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:09:00
Heat of formation + Delta-G solvation = 37.616015 kcal
Electronic energy + Delta-G solvation = -16337.508391 eV
Core-core repulsion = 13620.426810 eV
Total energy + Delta-G solvation = -2717.081581 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.71692 -40.62661 -37.59962 -35.72327 -33.37931 -32.46485 -31.58185 -28.71911
-27.19864 -27.17897 -23.94118 -21.50467 -21.15822 -20.24372 -18.85574 -18.49623
-17.70558 -17.20465 -16.90268 -16.00913 -15.52288 -15.03243 -14.79422 -14.63584
-14.17599 -14.07755 -13.97369 -13.50044 -13.24467 -13.06456 -12.76529 -12.56261
-12.27773 -11.60449 -11.58791 -11.42979 -10.65315 -10.61120 -10.47792 -9.98441
-9.28050 -8.31642 -6.27938 0.81653 1.41233 1.45584 1.51276 1.55464
1.63863 1.76878 2.05029 2.39747 2.80970 3.00090 3.67943 4.00000
4.16735 4.44019 4.44951 4.51931 4.60815 4.62503 4.72305 4.74229
4.83708 4.91456 5.05680 5.24115 5.40442 5.48212 5.61822 6.22138
6.35063 6.51263 6.59250 6.77717 7.24613 7.35455 8.86005
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.039236 B = 0.006831 C = 0.006149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 713.467281 B = 4097.822835 C = 4552.668956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.008 3.992
3 H 0.066 0.934
4 C -0.536 4.536
5 H 0.022 0.978
6 C 0.027 3.973
7 N -0.930 5.930
8 Si 0.931 3.069
9 H -0.270 1.270
10 H -0.219 1.219
11 H -0.283 1.283
12 C 0.556 3.444
13 O -0.578 6.578
14 N -0.624 5.624
15 C 0.190 3.810
16 C -0.297 4.297
17 C 0.122 3.878
18 N -0.455 5.455
19 H 0.462 0.538
20 N -0.290 5.290
21 C 0.039 3.961
22 C 0.189 3.811
23 H 0.055 0.945
24 H 0.069 0.931
25 H 0.036 0.964
26 H 0.269 0.731
27 H 0.064 0.936
28 H 0.074 0.926
29 H 0.231 0.769
30 H 0.105 0.895
31 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.328 10.354 -20.825 23.295
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.013 4.013
3 H 0.084 0.916
4 C -0.574 4.574
5 H 0.040 0.960
6 C -0.173 4.173
7 N -0.568 5.568
8 Si 0.752 3.248
9 H -0.195 1.195
10 H -0.141 1.141
11 H -0.209 1.209
12 C 0.348 3.652
13 O -0.456 6.456
14 N -0.359 5.359
15 C 0.066 3.934
16 C -0.310 4.310
17 C -0.026 4.026
18 N -0.166 5.166
19 H 0.312 0.688
20 N -0.114 5.114
21 C -0.128 4.128
22 C 0.064 3.936
23 H 0.074 0.926
24 H 0.088 0.912
25 H 0.055 0.945
26 H 0.078 0.922
27 H 0.082 0.918
28 H 0.092 0.908
29 H 0.248 0.752
30 H 0.123 0.877
31 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 1.385 10.896 -20.683 23.419
hybrid contribution 0.259 -0.525 0.404 0.711
sum 1.645 10.371 -20.279 22.837
Atomic orbital electron populations
1.21883 0.94445 1.00816 1.01424 1.19170 0.95398 0.97045 0.89723
0.91629 1.20774 1.37483 1.08801 0.90335 0.95991 1.25849 0.93559
1.03133 0.94757 1.70215 1.48621 1.37569 1.00381 0.86012 0.79012
0.79743 0.80036 1.19550 1.14064 1.20878 1.20863 0.74888 0.86691
0.82745 1.90575 1.55472 1.16551 1.82967 1.48169 1.69009 1.07175
1.11540 1.19315 1.00051 0.93069 0.80942 1.20735 1.17869 0.95879
0.96472 1.22148 0.97127 0.86259 0.97104 1.46495 1.53796 1.04990
1.11332 0.68827 1.77023 1.23029 1.19780 0.91593 1.22635 1.00200
0.92644 0.97306 1.19544 1.03349 0.80641 0.90046 0.92573 0.91218
0.94513 0.92178 0.91762 0.90833 0.75249 0.87715 0.88820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.33 8.69 71.98 0.63 -4.71 16
2 C 0.01 0.39 1.93 -12.29 -0.02 0.37 16
3 H 0.07 2.73 5.35 -2.39 -0.01 2.72 16
4 C -0.54 -31.85 8.70 25.60 0.22 -31.62 16
5 H 0.02 1.53 7.47 -2.91 -0.02 1.50 16
6 C 0.03 1.53 5.19 84.65 0.44 1.97 16
7 N -0.93 -58.37 13.96 21.45 0.30 -58.07 16
8 Si 0.93 41.24 26.08 68.60 1.79 43.03 16
9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
10 H -0.22 -8.26 6.06 99.48 0.60 -7.66 16
11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16
12 C 0.56 25.57 6.83 87.66 0.60 26.17 16
13 O -0.58 -31.60 16.49 -3.03 -0.05 -31.65 16
14 N -0.62 -22.27 3.33 -829.76 -2.76 -25.03 16
15 C 0.19 5.62 6.89 85.62 0.59 6.21 16
16 C -0.30 -7.01 6.96 -20.14 -0.14 -7.15 16
17 C 0.12 1.73 12.00 83.57 1.00 2.73 16
18 N -0.46 -6.65 7.35 -57.54 -0.42 -7.08 16
19 H 0.46 2.86 8.96 -213.35 -1.91 0.95 16
20 N -0.29 -6.97 12.71 -47.32 -0.60 -7.57 16
21 C 0.04 1.04 8.19 43.07 0.35 1.39 16
22 C 0.19 5.47 5.98 85.64 0.51 5.98 16
23 H 0.06 2.33 5.87 -2.38 -0.01 2.32 16
24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16
26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16
27 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16
28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16
29 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16
30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16
31 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16
Total: -1.00 -80.52 264.27 1.57 -78.94
By element:
Atomic # 1 Polarization: 6.92 SS G_CDS: -0.85 Total: 6.07 kcal
Atomic # 6 Polarization: -2.82 SS G_CDS: 4.18 Total: 1.36 kcal
Atomic # 7 Polarization: -94.25 SS G_CDS: -3.49 Total: -97.74 kcal
Atomic # 8 Polarization: -31.60 SS G_CDS: -0.05 Total: -31.65 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 1.79 Total: 43.03 kcal
Total: -80.52 1.57 -78.94 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328396565.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.559 kcal
(2) G-P(sol) polarization free energy of solvation -80.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds