Wall clock time and date at job start Sun Mar 29 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47141 * 2 1 4 4 C 1.50704 * 109.46968 * 119.99633 * 2 1 3 5 5 H 1.07998 * 119.99616 * 115.09446 * 4 2 1 6 6 C 1.37873 * 120.00172 * 295.09457 * 4 2 1 7 7 N 1.31515 * 119.99911 * 155.93120 * 6 4 2 8 8 Si 1.86801 * 120.00266 * 335.93306 * 6 4 2 9 9 H 1.48495 * 109.47142 * 269.06016 * 8 6 4 10 10 H 1.48506 * 109.46666 * 29.05932 * 8 6 4 11 11 H 1.48495 * 109.47139 * 149.05704 * 8 6 4 12 12 C 1.50699 * 109.47167 * 239.99926 * 2 1 3 13 13 O 1.21280 * 119.99566 * 276.03417 * 12 2 1 14 14 N 1.34769 * 119.99999 * 96.03471 * 12 2 1 15 15 C 1.46612 * 126.39217 * 185.88165 * 14 12 2 16 16 C 1.50729 * 107.76350 * 180.02562 * 15 14 12 17 17 C 1.35428 * 143.40140 * 180.02562 * 16 15 14 18 18 N 1.34909 * 107.74174 * 179.97438 * 17 16 15 19 19 H 0.97000 * 126.03917 * 179.97438 * 18 17 16 20 20 N 1.40046 * 107.93244 * 359.97438 * 18 17 16 21 21 C 1.31012 * 108.20665 * 359.97438 * 20 18 17 22 22 C 1.46605 * 126.39640 * 5.56876 * 14 12 2 23 23 H 1.09007 * 109.47072 * 294.22127 * 1 2 3 24 24 H 1.09000 * 109.47697 * 54.22419 * 1 2 3 25 25 H 1.09004 * 109.47536 * 174.22271 * 1 2 3 26 26 H 0.97000 * 120.00236 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.80432 * 299.56586 * 15 14 12 28 28 H 1.09004 * 109.80348 * 60.38005 * 15 14 12 29 29 H 1.08005 * 126.12581 * 359.97156 * 17 16 15 30 30 H 1.08997 * 109.80414 * 299.57363 * 22 14 12 31 31 H 1.09004 * 109.79591 * 60.43239 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.5862 -1.6323 1.1334 6 6 1.7846 -0.1832 2.4802 7 7 1.7780 -0.9681 3.5355 8 14 1.4584 1.6458 2.6746 9 1 2.7398 2.3532 2.9252 10 1 0.8368 2.1723 1.4330 11 1 0.5394 1.8657 3.8201 12 6 2.0323 -0.7104 -1.2304 13 8 2.1303 -1.9192 -1.2351 14 7 2.3726 -0.0025 -2.3256 15 6 2.7596 -0.5497 -3.6295 16 6 3.0526 0.6103 -4.5464 17 6 3.4371 0.9315 -5.8045 18 7 3.4810 2.2772 -5.8901 19 1 3.7256 2.7914 -6.6754 20 7 3.1111 2.8007 -4.6449 21 6 2.8535 1.7995 -3.8401 22 6 2.4188 1.4586 -2.4372 23 1 -0.3633 0.4216 0.9373 24 1 -0.3634 0.6008 -0.8337 25 1 -0.3634 -1.0225 -0.1034 26 1 1.6042 -0.5973 4.4147 27 1 3.6505 -1.1681 -3.5208 28 1 1.9433 -1.1465 -4.0365 29 1 3.6674 0.2351 -6.5973 30 1 1.4304 1.8752 -2.2433 31 1 3.1365 1.8610 -1.7223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328396565.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:00 Heat of formation + Delta-G solvation = 37.616015 kcal Electronic energy + Delta-G solvation = -16337.508391 eV Core-core repulsion = 13620.426810 eV Total energy + Delta-G solvation = -2717.081581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.71692 -40.62661 -37.59962 -35.72327 -33.37931 -32.46485 -31.58185 -28.71911 -27.19864 -27.17897 -23.94118 -21.50467 -21.15822 -20.24372 -18.85574 -18.49623 -17.70558 -17.20465 -16.90268 -16.00913 -15.52288 -15.03243 -14.79422 -14.63584 -14.17599 -14.07755 -13.97369 -13.50044 -13.24467 -13.06456 -12.76529 -12.56261 -12.27773 -11.60449 -11.58791 -11.42979 -10.65315 -10.61120 -10.47792 -9.98441 -9.28050 -8.31642 -6.27938 0.81653 1.41233 1.45584 1.51276 1.55464 1.63863 1.76878 2.05029 2.39747 2.80970 3.00090 3.67943 4.00000 4.16735 4.44019 4.44951 4.51931 4.60815 4.62503 4.72305 4.74229 4.83708 4.91456 5.05680 5.24115 5.40442 5.48212 5.61822 6.22138 6.35063 6.51263 6.59250 6.77717 7.24613 7.35455 8.86005 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.006831 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.467281 B = 4097.822835 C = 4552.668956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.022 0.978 6 C 0.027 3.973 7 N -0.930 5.930 8 Si 0.931 3.069 9 H -0.270 1.270 10 H -0.219 1.219 11 H -0.283 1.283 12 C 0.556 3.444 13 O -0.578 6.578 14 N -0.624 5.624 15 C 0.190 3.810 16 C -0.297 4.297 17 C 0.122 3.878 18 N -0.455 5.455 19 H 0.462 0.538 20 N -0.290 5.290 21 C 0.039 3.961 22 C 0.189 3.811 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.269 0.731 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.105 0.895 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 10.354 -20.825 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.013 4.013 3 H 0.084 0.916 4 C -0.574 4.574 5 H 0.040 0.960 6 C -0.173 4.173 7 N -0.568 5.568 8 Si 0.752 3.248 9 H -0.195 1.195 10 H -0.141 1.141 11 H -0.209 1.209 12 C 0.348 3.652 13 O -0.456 6.456 14 N -0.359 5.359 15 C 0.066 3.934 16 C -0.310 4.310 17 C -0.026 4.026 18 N -0.166 5.166 19 H 0.312 0.688 20 N -0.114 5.114 21 C -0.128 4.128 22 C 0.064 3.936 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.123 0.877 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.385 10.896 -20.683 23.419 hybrid contribution 0.259 -0.525 0.404 0.711 sum 1.645 10.371 -20.279 22.837 Atomic orbital electron populations 1.21883 0.94445 1.00816 1.01424 1.19170 0.95398 0.97045 0.89723 0.91629 1.20774 1.37483 1.08801 0.90335 0.95991 1.25849 0.93559 1.03133 0.94757 1.70215 1.48621 1.37569 1.00381 0.86012 0.79012 0.79743 0.80036 1.19550 1.14064 1.20878 1.20863 0.74888 0.86691 0.82745 1.90575 1.55472 1.16551 1.82967 1.48169 1.69009 1.07175 1.11540 1.19315 1.00051 0.93069 0.80942 1.20735 1.17869 0.95879 0.96472 1.22148 0.97127 0.86259 0.97104 1.46495 1.53796 1.04990 1.11332 0.68827 1.77023 1.23029 1.19780 0.91593 1.22635 1.00200 0.92644 0.97306 1.19544 1.03349 0.80641 0.90046 0.92573 0.91218 0.94513 0.92178 0.91762 0.90833 0.75249 0.87715 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.69 71.98 0.63 -4.71 16 2 C 0.01 0.39 1.93 -12.29 -0.02 0.37 16 3 H 0.07 2.73 5.35 -2.39 -0.01 2.72 16 4 C -0.54 -31.85 8.70 25.60 0.22 -31.62 16 5 H 0.02 1.53 7.47 -2.91 -0.02 1.50 16 6 C 0.03 1.53 5.19 84.65 0.44 1.97 16 7 N -0.93 -58.37 13.96 21.45 0.30 -58.07 16 8 Si 0.93 41.24 26.08 68.60 1.79 43.03 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.22 -8.26 6.06 99.48 0.60 -7.66 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.56 25.57 6.83 87.66 0.60 26.17 16 13 O -0.58 -31.60 16.49 -3.03 -0.05 -31.65 16 14 N -0.62 -22.27 3.33 -829.76 -2.76 -25.03 16 15 C 0.19 5.62 6.89 85.62 0.59 6.21 16 16 C -0.30 -7.01 6.96 -20.14 -0.14 -7.15 16 17 C 0.12 1.73 12.00 83.57 1.00 2.73 16 18 N -0.46 -6.65 7.35 -57.54 -0.42 -7.08 16 19 H 0.46 2.86 8.96 -213.35 -1.91 0.95 16 20 N -0.29 -6.97 12.71 -47.32 -0.60 -7.57 16 21 C 0.04 1.04 8.19 43.07 0.35 1.39 16 22 C 0.19 5.47 5.98 85.64 0.51 5.98 16 23 H 0.06 2.33 5.87 -2.38 -0.01 2.32 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 Total: -1.00 -80.52 264.27 1.57 -78.94 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.85 Total: 6.07 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.18 Total: 1.36 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.49 Total: -97.74 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.05 Total: -31.65 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.79 Total: 43.03 kcal Total: -80.52 1.57 -78.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328396565.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.559 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds