Wall clock time and date at job start Sun Mar 29 2020 22:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 N 1.31791 * 119.12432 * 269.73320 * 16 15 14 18 18 C 1.32340 * 120.81715 * 179.76067 * 17 16 15 19 19 C 1.38592 * 119.10500 * 0.49779 * 18 17 16 20 20 C 1.38596 * 118.40030 * 359.75760 * 19 18 17 21 21 N 1.31803 * 119.12189 * 89.99814 * 16 15 14 22 22 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 25 25 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 27 27 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 28 28 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 29 29 H 1.08000 * 120.44509 * 180.23657 * 18 17 16 30 30 H 1.08002 * 120.80139 * 179.77386 * 19 18 17 31 31 H 1.07998 * 120.45000 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 7 0.5257 -0.6061 -5.4028 18 6 0.0472 -0.0046 -6.4801 19 6 0.7813 1.0152 -7.0649 20 6 1.9920 1.3689 -6.4906 21 7 2.4043 0.7255 -5.4101 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7087 1.1612 3.4844 26 1 1.1446 0.5355 -2.5436 27 1 3.2755 -0.9477 -3.6550 28 1 1.8218 -1.9748 -3.6465 29 1 -0.9006 -0.3071 -6.9003 30 1 0.4184 1.5223 -7.9467 31 1 2.5908 2.1591 -6.9187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330916489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:24 Heat of formation + Delta-G solvation = 8.489903 kcal Electronic energy + Delta-G solvation = -15790.155264 eV Core-core repulsion = 13071.810680 eV Total energy + Delta-G solvation = -2718.344584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.22302 -38.68812 -34.62877 -33.91118 -33.68254 -32.05327 -30.37544 -27.12563 -25.08431 -24.75367 -23.15272 -21.94080 -19.43299 -17.73522 -17.40226 -16.27920 -16.00477 -15.48228 -15.26241 -14.49559 -14.37062 -14.22552 -13.75968 -13.10006 -12.73292 -12.69646 -12.13031 -11.43149 -11.06100 -11.04398 -10.98099 -10.67738 -10.62623 -10.20634 -9.95097 -9.88888 -9.42475 -8.91725 -8.58954 -8.45798 -8.28847 -5.98903 -4.01738 0.59622 0.88244 3.36054 3.38716 3.43499 3.52782 3.67826 3.75785 3.97174 4.20079 4.35199 4.52880 4.73428 4.84223 5.09723 5.34447 5.41617 5.76826 5.82917 6.14819 6.29172 6.66882 6.77778 6.88520 6.95520 7.02523 7.52277 7.79819 7.90269 8.02594 8.17255 8.46206 9.07835 9.25095 9.63638 11.08857 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055821 B = 0.004912 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.482442 B = 5698.839383 C = 5858.044662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.498 4.498 5 H 0.076 0.924 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.543 6.543 14 N -0.738 5.738 15 C 0.189 3.811 16 C 0.311 3.689 17 N -0.504 5.504 18 C 0.147 3.853 19 C -0.231 4.231 20 C 0.147 3.853 21 N -0.504 5.504 22 H 0.032 0.968 23 H 0.093 0.907 24 H 0.010 0.990 25 H 0.260 0.740 26 H 0.396 0.604 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 2.920 -18.762 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.537 4.537 5 H 0.094 0.906 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.314 3.686 13 O -0.419 6.419 14 N -0.393 5.393 15 C 0.063 3.937 16 C 0.044 3.956 17 N -0.218 5.218 18 C -0.020 4.020 19 C -0.253 4.253 20 C -0.020 4.020 21 N -0.218 5.218 22 H 0.051 0.949 23 H 0.112 0.888 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.229 0.771 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.187 0.813 30 H 0.166 0.834 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.721 1.801 -17.708 17.883 hybrid contribution -0.426 0.587 -0.267 0.773 sum -2.147 2.388 -17.976 18.260 Atomic orbital electron populations 1.21738 0.96486 0.99901 1.00841 1.18886 0.94178 0.96887 0.89117 0.92926 1.21197 1.30811 1.12766 0.88918 0.90629 1.24957 0.95147 0.95090 0.99133 1.69889 1.37241 1.23203 1.23379 0.86391 0.78588 0.79789 0.82447 1.19520 1.21090 1.21087 1.22011 0.78351 0.84279 0.83990 1.90539 1.37982 1.26823 1.86517 1.46180 1.55739 1.32660 1.04755 1.19816 0.99594 0.95271 0.78987 1.23343 0.86742 0.89915 0.95650 1.68346 1.13624 1.28760 1.11069 1.23315 0.98738 0.90121 0.89786 1.22956 0.97958 1.00888 1.03470 1.23313 0.93115 0.95702 0.89837 1.68347 1.35000 1.07664 1.10835 0.94873 0.88834 0.97060 0.93065 0.77096 0.89384 0.89383 0.81337 0.83413 0.81336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.86 37.16 0.33 -2.79 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 3 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 12.37 7.15 -10.98 -0.08 12.29 16 13 O -0.54 -14.47 15.46 5.55 0.09 -14.39 16 14 N -0.74 -13.90 5.44 -61.47 -0.33 -14.23 16 15 C 0.19 3.13 6.11 -5.20 -0.03 3.10 16 16 C 0.31 4.50 7.01 -157.19 -1.10 3.40 16 17 N -0.50 -6.75 10.33 -10.73 -0.11 -6.86 16 18 C 0.15 1.38 11.30 -17.20 -0.19 1.18 16 19 C -0.23 -1.75 10.17 -39.32 -0.40 -2.15 16 20 C 0.15 1.37 11.30 -17.20 -0.19 1.18 16 21 N -0.50 -6.74 10.34 -10.73 -0.11 -6.85 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 24 H 0.01 0.21 7.55 -51.93 -0.39 -0.18 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.40 6.85 7.87 -40.82 -0.32 6.53 16 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 275.27 15.07 4.15 4.15 Total: -1.00 -33.38 275.27 -6.49 -39.87 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.48 Total: 2.59 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.30 Total: 3.58 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.07 Total: -52.87 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.38 -6.49 -39.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330916489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.360 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds